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Report for CCDS90835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90835.1 Public Homo sapiens 1 PLEKHN1 24 110 108 CCDS HistoryNCBI Gene:84069Re-query CCDS DB by CCDS ID:90835.1Re-query CCDS DB by GeneID:84069See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379409.6 ENSP00000368719.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379409.6Link to Ensembl Protein Viewer:ENSP00000368719.2Re-query CCDS DB by Nucleotide ID:ENST00000379409Re-query CCDS DB by Protein ID:ENSP00000368719
Current member NCBI NM_001410697.1 NP_001397626.1 Accepted alive Link to Nucleotide Sequence:NM_001410697.1Link to Protein Sequence:NP_001397626.1Re-query CCDS DB by Nucleotide ID:NM_001410697Re-query CCDS DB by Protein ID:NP_001397626Link to BLAST:NP_001397626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001397626.1 663 Q494U1-2 663 100% 0 0

Chromosomal Locations for CCDS 90835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 966532 966614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 966704 966803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970277 970423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970521 970601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970686 971006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 971077 971208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 971324 971404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972075 972150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972288 972424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972861 973010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 973186 973326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 973500 973640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 973833 974051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 974316 974364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 974442 974575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGGGAACAGCCACTGTGTCCCTCAGGCCCCCAGGAGGCTCCGGGCCTCCTTCTCCAGAAAGCCCTCGC
TGAAGGGAAACAGAGAGGACAGCGCGCGGATGTCGGCCGGCCTGCCGGGCCCCGAGGCTGCTCGAAGCGG
GGACGCCGCCGCCAACAAGCTCTTCCACTACATCCCGGGCACGGACATCCTGGACCTGGAGAACCAGCGA
GAAAACCTGGAGCAGCCATTCCTGAGTGTGTTCAAGAAGGGGCGGCGGAGGGTGCCTGTGAGGAACCTGG
GAAAAGTTGTGCATTACGCCAAGGTCCAGCTGCGGTTCCAGCACAGCCAGGATGTCAGCGACTGCTACCT
GGAGCTATTCCCCGCCCACCTGTACTTCCAGGCCCACGGCTCGGAAGGACTCACATTTCAGGGGCTGTTA
CCGCTGACGGAGCTGAGTGTCTGCCCGCTCGAGGGGTCCCGAGAGCACGCCTTCCAGATCACAGGTGTTT
GGGATGCTTCCCGGGCCCCCAGAGGCACTCCTGACCCAGGACTTGGAGAGGGGCCTGCCCTGTGGCTGCG
GAGCACGTGTGTGTATGTGTGTGCCCTCTCTGCCCTGCCCGCAGGCCCACTGCCCGCACCCCTCCTGGTG
CTCTGCCCCAGCCGGGCCGAGCTGGACCGCTGGCTTTACCACCTGGAGAAGCAGACGGCCCTCCTCGGGG
GGCCGCGGCGCTGCCACTCGGCACCCCCACAGGGGTCCTGCGGAGACGAACTCCCCTGGACTTTGCAGCG
CCGTCTAACCCGGCTGCGGACGGCGTCAGGGCACGAACCCGGCGGCAGTGCTGTCTGTGCCTCGAGGGTC
AAGCTGCAGCACCTGCCCGCACAGGAGCAGTGGGACCGGCTCTTGGTCCTGTACCCAACGTCCTTGGCCA
TTTTCTCCGAGGAGCTGGACGGGCTTTGCTTCAAGGGGGAGCTCCCACTCCGTGCCGTCCACATCAACCT
GGAGGAGAAGGAGAAGCAGATCCGCTCCTTCCTGATTGAAGGCCCCCTCATCAACACCATCCGCGTGGTG
TGCGCCAGCTACGAGGACTACGGTCACTGGCTGCTGTGCCTTCGCGCTGTCACCCACAGGGAGGGGGCCC
CGCCGCTGCCTGGTGCCGAGAGCTTCCCAGGGTCGCAGGTTATGGGCAGTGGCCGAGGCTCACTCTCCTC
AGGCGGACAGACCAGCTGGGACTCGGGGTGCTTGGCGCCCCCCTCCACCCGCACCAGCCACTCCCTGCCT
GAGTCCTCAGTGCCATCCACCGTGGGCTGCTCCTCCCAGCACACACCGGACCAGGCCAACTCTGACCGTG
CCAGCATTGGCCGACGGAGGACCGAGCTGAGACGCAGTGGCAGCAGCCGGTCACCCGGGAGCAAGGCCCG
GGCAGAGGGCCGCGGCCCTGTCACCCCACTGCACCTGGACCTGACCCAGCTGCACAGGCTGAGCCTGGAG
AGCAGCCCAGATGCCCCTGACCACACTTCGGAAACATCACACTCGCCCCTCTATGCCGACCCCTACACAC
CACCCGCCACCTCCCACCGCAGGGTCACAGATGTCCGGGGCCTGGAGGAGTTCCTCAGTGCCATGCAGAG
TGCACGTGGACCCACGCCCTCGAGCCCACTCCCCTCGGTGCCTGTGTCTGTGCCTGCCTCTGACCCTCGC
TCCTGCTCCTCCGGCCCCGCTGGCCCCTACTTGCTCTCCAAGAAGGGAGCCCTGCAGTCCAGAGCCGCTC
AGAGACACCGGGGCTCAGCCAAGGATGGGGGGCCGCAGCCCCCAGACGCCCCTCAGCTTGTCTCCTCTGC
CAGGGAAGGTTCGCCCGAACCCTGGCTGCCTCTGACAGATGGTCGGTCCCCCAGGAGGAGCCGGGACCCC
GGCTACGACCACCTCTGGGACGAGACTTTGTCTTCCTCCCACCAGAAGTGCCCCCAGCTTGGAGGGCCTG
AGGCCAGTGGGGGGCTTGTGCAGTGGATCTGA

Translation (663 aa):
MGNSHCVPQAPRRLRASFSRKPSLKGNREDSARMSAGLPGPEAARSGDAAANKLFHYIPGTDILDLENQR
ENLEQPFLSVFKKGRRRVPVRNLGKVVHYAKVQLRFQHSQDVSDCYLELFPAHLYFQAHGSEGLTFQGLL
PLTELSVCPLEGSREHAFQITGVWDASRAPRGTPDPGLGEGPALWLRSTCVYVCALSALPAGPLPAPLLV
LCPSRAELDRWLYHLEKQTALLGGPRRCHSAPPQGSCGDELPWTLQRRLTRLRTASGHEPGGSAVCASRV
KLQHLPAQEQWDRLLVLYPTSLAIFSEELDGLCFKGELPLRAVHINLEEKEKQIRSFLIEGPLINTIRVV
CASYEDYGHWLLCLRAVTHREGAPPLPGAESFPGSQVMGSGRGSLSSGGQTSWDSGCLAPPSTRTSHSLP
ESSVPSTVGCSSQHTPDQANSDRASIGRRRTELRRSGSSRSPGSKARAEGRGPVTPLHLDLTQLHRLSLE
SSPDAPDHTSETSHSPLYADPYTPPATSHRRVTDVRGLEEFLSAMQSARGPTPSSPLPSVPVSVPASDPR
SCSSGPAGPYLLSKKGALQSRAAQRHRGSAKDGGPQPPDAPQLVSSAREGSPEPWLPLTDGRSPRRSRDP
GYDHLWDETLSSSHQKCPQLGGPEASGGLVQWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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