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Report for CCDS9104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9104.1 Public Homo sapiens 12 TCP11L2 24 110 108 CCDS HistoryNCBI Gene:255394Re-query CCDS DB by CCDS ID:9104.1Re-query CCDS DB by GeneID:255394See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9104.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299045.8 ENSP00000299045.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299045.8Link to Ensembl Protein Viewer:ENSP00000299045.3Re-query CCDS DB by Nucleotide ID:ENST00000299045Re-query CCDS DB by Protein ID:ENSP00000299045
Original member Current member NCBI NM_152772.3 NP_689985.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152772.3Link to Protein Sequence:NP_689985.1Re-query CCDS DB by Nucleotide ID:NM_152772Re-query CCDS DB by Protein ID:NP_689985Link to BLAST:NP_689985.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689985.1 519 Q8N4U5-1 519 100% 0 0

Chromosomal Locations for CCDS 9104.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 106311076 106311232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106314358 106314493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106318344 106318464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106321486 106321706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106323510 106323646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106335639 106335826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106336032 106336213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106340826 106340998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106346286 106346530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGCCCTTCAATGGCGAGAAGCAGTGTGTGGGAGAGGACCAGCCAAGCGATTCTGATTCTTCCCGGTTTT
CCGAAAGCATGGCTTCGCTCAGTGACTATGAATGCTCCAGGCAGAGCTTTGCAAGTGACTCCTCCAGCAA
ATCCAGCTCTCCTGCTTCAACAAGCCCTCCAAGGGTTGTAACATTTGATGAAGTGATGGCTACAGCAAGG
AACTTATCAAACTTGACTCTTGCTCATGAGATTGCTGTAAATGAGAACTTTCAATTGAAACAAGAGGCTC
TCCCAGAAAAGAGTTTGGCTGGTCGAGTGAAGCACATTGTTCACCAGGCCTTCTGGGACGTCTTGGATTC
AGAACTAAATGCTGACCCTCCTGAGTTTGAACATGCCATCAAACTGTTTGAAGAAATCAGAGAGATTCTT
CTCTCTTTTCTCACTCCCGGTGGCAACCGGCTTCGCAACCAAATCTGTGAAGTTTTGGACACAGACCTCA
TTAGGCAGCAGGCTGAGCACAGTGCTGTTGACATCCAAGGCCTGGCCAACTATGTCATCAGTACGATGGG
AAAGCTGTGTGCTCCCGTGCGAGATAATGATATCAGAGAGTTAAAGGCTACTGGCAACATCGTGGAGGTG
CTGAGACAAATATTCCATGTCCTGGACCTCATGCAAATGGACATGGCCAATTTTACAATTATGAGTCTCA
GACCGCACCTTCAACGCCAGTTGGTGGAATATGAGAGAACCAAGTTCCAGGAAATTTTGGAAGAAACTCC
AAGTGCTCTTGATCAGACTACAGAATGGATAAAAGAATCTGTAAATGAAGAATTATTTTCTCTTTCTGAG
AGTGCTTTAACTCCTGGGGCCGAAAATACCTCCAAGCCAAGCCTGAGCCCTACTTTGGTGCTAAATAATA
GTTACTTGAAACTGTTACAGTGGGATTATCAGAAAAAAGAATTACCAGAGACACTTATGACAGATGGAGC
ACGTCTTCAGGAACTAACAGAAAAGCTGAATCAATTGAAAATTATTGCCTGCCTGTCCCTAATTACCAAC
AACATGGTGGGTGCTATTACAGGAGGCCTGCCTGAGCTTGCAAGCAGGTTAACAAGGATTTCAGCTGTTC
TACTTGAAGGCATGAACAAAGAGACCTTTAACTTGAAGGAAGTCCTGAATTCTATTGGTATTCAGACTTG
TGTTGAGGTTAACAAGACCCTGATGGAAAGAGGTTTACCCACTTTAAATGCTGAGATTCAAGCTAATCTT
ATAGGTCAATTTTCAAGCATTGAAGAGGAGGACAATCCTATCTGGTCCTTGATTGATAAACGAATTAAGC
TTTACATGAGAAGGCTACTTTGTCTTCCAAGCCCTCAAAAATGCATGCCTCCTATGCCAGGAGGCCTAGC
TGTCATTCAGCAGGAGCTAGAAGCCCTAGGCTCTCAATATGCAAACATTGTGAATCTCAACAAACAAGTG
TATGGACCATTTTATGCAAATATACTTCGAAAGCTGCTCTTCAATGAGGAAGCCATGGGGAAGGTAGATG
CTTCACCTCCTACTAACTAA

Translation (519 aa):
MPFNGEKQCVGEDQPSDSDSSRFSESMASLSDYECSRQSFASDSSSKSSSPASTSPPRVVTFDEVMATAR
NLSNLTLAHEIAVNENFQLKQEALPEKSLAGRVKHIVHQAFWDVLDSELNADPPEFEHAIKLFEEIREIL
LSFLTPGGNRLRNQICEVLDTDLIRQQAEHSAVDIQGLANYVISTMGKLCAPVRDNDIRELKATGNIVEV
LRQIFHVLDLMQMDMANFTIMSLRPHLQRQLVEYERTKFQEILEETPSALDQTTEWIKESVNEELFSLSE
SALTPGAENTSKPSLSPTLVLNNSYLKLLQWDYQKKELPETLMTDGARLQELTEKLNQLKIIACLSLITN
NMVGAITGGLPELASRLTRISAVLLEGMNKETFNLKEVLNSIGIQTCVEVNKTLMERGLPTLNAEIQANL
IGQFSSIEEEDNPIWSLIDKRIKLYMRRLLCLPSPQKCMPPMPGGLAVIQQELEALGSQYANIVNLNKQV
YGPFYANILRKLLFNEEAMGKVDASPPTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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