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Report for CCDS91471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91471.1 Public Homo sapiens 11 FAM180B 24 110 108 CCDS HistoryNCBI Gene:399888Re-query CCDS DB by CCDS ID:91471.1Re-query CCDS DB by GeneID:399888See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 91471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538490.3 ENSP00000443133.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000538490.3Link to Ensembl Protein Viewer:ENSP00000443133.2Re-query CCDS DB by Nucleotide ID:ENST00000538490Re-query CCDS DB by Protein ID:ENSP00000443133
Original member Current member NCBI NM_001164379.3 NP_001157851.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164379.3Link to Protein Sequence:NP_001157851.1Re-query CCDS DB by Nucleotide ID:NM_001164379Re-query CCDS DB by Protein ID:NP_001157851Link to BLAST:NP_001157851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157851.1 183 Q6P0A1 183 100% 0 0

Chromosomal Locations for CCDS 91471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47586769 47586853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47587751 47587821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47588039 47588434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCTGCGACCCTGCAGTTCCTGGTTTGCCTGGTGGTAGCCATTTGTCTCCTCTCTGGTGTGACTACAA
CCCAGCCCCATGCAGGGCAGCCCATGGACAGCACCAGCGTGGGAGGTGGCCTGCAGGAGCCAGAGGCCCC
GGAAGTGATGTTTGAGCTGCTCTGGGCTGGGCTGGAGCTGGATGTCATGGGGCAGCTGCACATCCAGGAT
GAGGAACTAGCGTCCACACACCCAGGCCGCCGACTCAGACTCCTCCTGCAGCACCACGTGCCCAGTGACT
TGGAGGGCACTGAGCAGTGGCTGCAGCAGCTCCAGGACCTGCGGAAGGGGCCTCCTCTTAGCACTTGGGA
CTTTGAACATCTGCTCCTCACAGGCCTGTCCTGCGTCTACCGGCTCCACGCAGCTAGTGAGGCTGAGGAA
CGGGGCCGCTGGGCCCAGGTCTTCGCTCTCCTGGCACAGGAAACACTCTGGGACCTGTGCAAAGGTTTCT
GCCCCCAGGACCGGCCCCCTTCCCTGGGGTCCTGGGCCTCCATCCTTGACCCCTTCCCCTGA

Translation (183 aa):
MAATLQFLVCLVVAICLLSGVTTTQPHAGQPMDSTSVGGGLQEPEAPEVMFELLWAGLELDVMGQLHIQD
EELASTHPGRRLRLLLQHHVPSDLEGTEQWLQQLQDLRKGPPLSTWDFEHLLLTGLSCVYRLHAASEAEE
RGRWAQVFALLAQETLWDLCKGFCPQDRPPSLGSWASILDPFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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