NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS91487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91487.1 Public Homo sapiens 11 SYT7 24 110 108 CCDS HistoryNCBI Gene:9066Re-query CCDS DB by CCDS ID:91487.1Re-query CCDS DB by GeneID:9066See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 91487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539008.6 ENSP00000439694.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000539008.6Link to Ensembl Protein Viewer:ENSP00000439694.1Re-query CCDS DB by Nucleotide ID:ENST00000539008Re-query CCDS DB by Protein ID:ENSP00000439694
Original member Current member NCBI NM_001365809.2 NP_001352738.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365809.2Link to Protein Sequence:NP_001352738.1Re-query CCDS DB by Nucleotide ID:NM_001365809Re-query CCDS DB by Protein ID:NP_001352738Link to BLAST:NP_001352738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352738.1 686 O43581-3 686 100% 0 0

Chromosomal Locations for CCDS 91487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61518627 61518731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61523075 61523274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61523827 61523941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61524363 61524532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61527915 61528185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61532989 61533124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61538144 61538266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61542211 61542579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61546031 61546255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61547177 61547308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61551384 61551463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61556104 61556207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61580790 61580820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGTACCGGGACCCGGAGGCGGCCAGCCCAGGGGCGCCCTCGCGCGACGTCCTGCTGGTCTCTGCCATCA
TCACCGTCAGCCTTAGCGTCACTGTCGTCCTCTGCGGCCTCTGCCACTGGTGTCAGCGCAAACTGGGCAA
ACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCAGGGCGTGGGCGCAGTGAGAAGAAGGCT
ATCAATGATCTAGACAGAGACTTTTGGAATAACAATGAGAGCACAGTGCAGCAGAAATGGAGCTCCTACC
CTCCCAAGGAGTTTATTCTAAACATTTCACCCTACGCCCCTTATGGCGACCCACGACTGTCCCTCAATGG
CACCCTCCTGTCGGGCGCCAAAGTGGCCGCCGCGGCGGGGCTGGCGGTGGAGCGGGAAGGCCGGCTGGGG
GAGAAGCCGGCACCGGTGCCGCCACCCGGAGAGGACGCCTTGAGAAGCGGCGGGGCTGCCCCCAGCGAGC
CGGGCAGCGGTGGCAAGGCGGGGAGAGGCCGCTGGCGGACGGTGCAGAGCCACCTGGCCGCAGGGAAGCT
CAACTTGTCCAATTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCACG
GGAGAGCCGAAATGCCAGCGACCCCGCACCCTGATGCGGCAGCAGAGCCTGCAACAGCCGCTGAGCCAGC
ACCAGCGGGGCCGGCAGCCCAGCCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACATGGC
CTCGGCACCAGGCCCCAACCCCCGGGCCTATGGCCGGGGCCAGGCTCGGCAGGGCACCTCGGCCGGCTCC
AAGTACCGGGCGGCAGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTC
GAAACCGAGGCTTGGACATGAAATCCTTCCTGGAAGGCCGGATGGTGGTGCTATCCTTGGTCTTAGGGCT
TTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCT
CAGGGGGACAAGAGGTTGCCTGCAGGAGGGAAGGCGGTGAACACAGCCCCCGTGCCAGGCCAGACACCCC
ACGATGAGTCCGACCGCCGGACCGAGCCACGTTCCTCCGTCTCAGACCTCGTCAACTCCCTCACCAGCGA
GATGCTCATGCTCTCCCCAGGCTCCGAGGAGGATGAGGCCCACGAGGGTTGCAGCCGAGAGAACCTGGGC
CGGATCCAGTTCAGTGTCGGCTACAACTTCCAGGAGTCCACGCTCACCGTGAAGATCATGAAGGCCCAGG
AGCTGCCGGCCAAGGACTTCAGCGGCACCAGCGACCCCTTCGTCAAGATCTACCTGCTGCCCGACAAGAA
GCACAAGCTGGAGACCAAGGTGAAGCGGAAGAACCTGAACCCCCACTGGAACGAGACCTTCCTCTTTGAA
GGTTTTCCCTATGAGAAGGTGGTGCAGAGGATCCTCTACCTCCAAGTCCTGGACTATGACCGCTTCAGCC
GCAACGACCCCATTGGGGAGGTGTCCATCCCCCTTAACAAGGTGGACCTGACCCAGATGCAGACCTTCTG
GAAGGATCTGAAGCCATGCAGCGATGGGAGTGGGAGCCGAGGGGAGCTGCTCTTGTCTCTCTGCTACAAC
CCCTCTGCCAACTCCATCATCGTGAACATCATCAAAGCCCGGAACCTCAAAGCCATGGACATCGGGGGCA
CATCAGACCCCTACGTGAAGGTATGGCTGATGTACAAGGACAAGCGGGTGGAGAAGAAGAAGACGGTGAC
GATGAAGAGGAACCTGAACCCCATCTTCAATGAGTCCTTCGCCTTCGATATCCCCACGGAGAAGCTGAGG
GAGACGACCATCATCATCACTGTCATGGACAAGGACAAGCTCAGCCGCAATGACGTCATCGGCAAGATCT
ACCTGTCCTGGAAGAGCGGGCCAGGGGAGGTGAAGCACTGGAAGGACATGATTGCCCGTCCCCGGCAGCC
CGTGGCCCAGTGGCACCAGCTGAAGGCCTGA

Translation (686 aa):
MYRDPEAASPGAPSRDVLLVSAIITVSLSVTVVLCGLCHWCQRKLGKRYKNSLETVGTPDSGRGRSEKKA
INDLDRDFWNNNESTVQQKWSSYPPKEFILNISPYAPYGDPRLSLNGTLLSGAKVAAAAGLAVEREGRLG
EKPAPVPPPGEDALRSGGAAPSEPGSGGKAGRGRWRTVQSHLAAGKLNLSNFEDSTLSTATTLESIPSST
GEPKCQRPRTLMRQQSLQQPLSQHQRGRQPSQPTTSQSLGQLQAHMASAPGPNPRAYGRGQARQGTSAGS
KYRAAGGRSRSNPGSWDHVVGQIRNRGLDMKSFLEGRMVVLSLVLGLSEQDDFANIPDLQNPGTQQNQNA
QGDKRLPAGGKAVNTAPVPGQTPHDESDRRTEPRSSVSDLVNSLTSEMLMLSPGSEEDEAHEGCSRENLG
RIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE
GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSGSRGELLLSLCYN
PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLR
ETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH