NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9149.1 Public Homo sapiens 12 PPTC7 24 110 108 CCDS HistoryNCBI Gene:160760Re-query CCDS DB by CCDS ID:9149.1Re-query CCDS DB by GeneID:160760See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9149.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354300.5 ENSP00000346255.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354300.5Link to Ensembl Protein Viewer:ENSP00000346255.3Re-query CCDS DB by Nucleotide ID:ENST00000354300Re-query CCDS DB by Protein ID:ENSP00000346255
Original member Current member NCBI NM_139283.2 NP_644812.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139283.2Link to Protein Sequence:NP_644812.1Re-query CCDS DB by Nucleotide ID:NM_139283Re-query CCDS DB by Protein ID:NP_644812Link to BLAST:NP_644812.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_644812.1 304 Q8NI37 304 100% 0 0

Chromosomal Locations for CCDS 9149.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110537037 110537095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110538144 110538273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110539822 110539945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110545880 110546078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110551789 110551968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110582809 110583031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGTTCTCGGTCCTCTCGTACGGGCGGCTGGTGGCCCGCGCCGTGCTCGGCGGCCTCTCGCAGACCGACC
CCAGGGCCGGCGGCGGCGGCGGCGGCGACTACGGACTGGTGACGGCCGGCTGCGGCTTCGGGAAGGACTT
CCGTAAGGGCCTCCTCAAGAAGGGCGCGTGCTACGGGGACGACGCGTGCTTCGTGGCCCGGCACCGTTCC
GCGGACGTGCTCGGGGTTGCAGATGGTGTAGGAGGCTGGAGAGACTATGGAGTTGATCCATCTCAATTCT
CAGGGACTTTAATGCGGACGTGTGAACGTTTAGTAAAAGAAGGACGGTTCGTACCTAGTAATCCCATTGG
AATTCTCACCACAAGCTACTGTGAGTTGCTGCAAAATAAAGTCCCTTTGCTCGGTAGCAGCACCGCCTGC
ATTGTGGTGCTGGACAGAACCAGCCACCGCTTACACACAGCAAACCTGGGCGATTCAGGCTTCCTGGTTG
TCAGGGGTGGTGAAGTCGTGCACCGATCAGATGAGCAGCAGCATTACTTCAACACTCCATTCCAGCTCTC
AATCGCTCCCCCTGAAGCCGAGGGAGTCGTCTTGAGCGACAGTCCGGATGCTGCTGATAGCACGTCTTTC
GATGTCCAGCTAGGAGACATTATCCTGACGGCAACAGATGGACTCTTTGACAACATGCCTGATTATATGA
TTCTTCAGGAGCTAAAAAAGTTAAAGAATTCAAATTATGAGAGTATACAACAGACTGCCAGAAGCATTGC
TGAGCAAGCTCATGAGCTGGCCTATGACCCAAATTATATGTCACCTTTTGCACAGTTTGCATGTGACAAT
GGATTGAATGTGAGAGGTGGAAAGCCAGATGACATCACCGTCCTTCTTTCAATAGTGGCTGAGTATACAG
ACTAG

Translation (304 aa):
MFSVLSYGRLVARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGDDACFVARHRS
ADVLGVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILTTSYCELLQNKVPLLGSSTAC
IVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYFNTPFQLSIAPPEAEGVVLSDSPDAADSTSF
DVQLGDIILTATDGLFDNMPDYMILQELKKLKNSNYESIQQTARSIAEQAHELAYDPNYMSPFAQFACDN
GLNVRGGKPDDITVLLSIVAEYTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH