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Report for CCDS92074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92074.1 Public Homo sapiens 16 JMJD8 24 110 108 CCDS HistoryNCBI Gene:339123Re-query CCDS DB by CCDS ID:92074.1Re-query CCDS DB by GeneID:339123See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000562824.5 ENSP00000454358.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000562824.5Link to Ensembl Protein Viewer:ENSP00000454358.1Re-query CCDS DB by Nucleotide ID:ENST00000562824Re-query CCDS DB by Protein ID:ENSP00000454358
Original member Current member NCBI NM_001323920.3 NP_001310849.2 Accepted alive Link to Nucleotide Sequence:NM_001323920.3Link to Protein Sequence:NP_001310849.2Re-query CCDS DB by Nucleotide ID:NM_001323920Re-query CCDS DB by Protein ID:NP_001310849Link to BLAST:NP_001310849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001310849.2 234 Q96S16-2 234 100% 0 0

Chromosomal Locations for CCDS 92074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 682794 682874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 682953 683087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 683167 683234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 683322 683441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 683530 683598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 683685 683781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 683861 683909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 684234 684319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGCGCCGGCGTCGCGGTTGCTCGCGCTCTGGGCGCTGGCGGCTGTGGCTCTACCCGGCTCCGGGGCGG
AGGGCGACGGCGGGTGGTACGCCTTCGTCAGGCCCGTCATCCTGCAGGGACTCACGGACAACTCGAGGTT
CCGGGCCCTGTGCTCCCGCGACAGGTTGCTGGCTTCGTTTGGGGACAGAGTGGTCCGGCTGAGCACCGCC
AACACCTACTCCTACCACAAAGTGGACTTGCCCTTCCAGGAGTATGTGGAGCAGCTGCTGCACCCCCAGG
ACCCCACCTCCCTGGGCAATGACACCCTGTACTTCTTCGGGGACAACAACTTCACCGAGTGGGCCTCTCT
CTTTCGGCACTACTCCCCACCCCCATTTGGCCTGCTGGGAACCGCTCCAGCTTACAGCTTTGGAATCGCA
GGAGCTGGCTCGGGGGTGCCCTTCCACTGGCATGGACCCGGGTACTCAGAAGTGATCTACGGTCGTAAGC
GCTGGTTCCTTTACCCACCTGAGAAGACGCCAGAGTTCCACCCCAACAAGACCACGCTGGCCTGGCTCCG
GGACACATACCCAGCCCTGCCACCGTCTGCACGGCCCCTGGAGTGTACCATCCGGGCTGGTGAGGTGCTG
TACTTCCCCGACCGCTGGTGGCATGCTACGCTCAACCTTGACACCAGCGTCTTCATCTCCACCTTCCTCG
GCTAG

Translation (234 aa):
MAPASRLLALWALAAVALPGSGAEGDGGWYAFVRPVILQGLTDNSRFRALCSRDRLLASFGDRVVRLSTA
NTYSYHKVDLPFQEYVEQLLHPQDPTSLGNDTLYFFGDNNFTEWASLFRHYSPPPFGLLGTAPAYSFGIA
GAGSGVPFHWHGPGYSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLRDTYPALPPSARPLECTIRAGEVL
YFPDRWWHATLNLDTSVFISTFLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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