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Report for CCDS92432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92432.1 Public Homo sapiens 18 MTCL1 24 110 108 CCDS HistoryNCBI Gene:23255Re-query CCDS DB by CCDS ID:92432.1Re-query CCDS DB by GeneID:23255See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 92432.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306329.16 ENSP00000305027.11 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306329.16Link to Ensembl Protein Viewer:ENSP00000305027.11Re-query CCDS DB by Nucleotide ID:ENST00000306329Re-query CCDS DB by Protein ID:ENSP00000305027
Original member Current member NCBI NM_001378205.1 NP_001365134.1 Accepted alive Link to Nucleotide Sequence:NM_001378205.1Link to Protein Sequence:NP_001365134.1Re-query CCDS DB by Nucleotide ID:NM_001378205Re-query CCDS DB by Protein ID:NP_001365134Link to BLAST:NP_001365134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365134.1 1905 Q9Y4B5-1 1905 100% 0 0

Chromosomal Locations for CCDS 92432.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 8705661 8706713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8718424 8718648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8720338 8720496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8777833 8777892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8783530 8784843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8785936 8786091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8796232 8796462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8798097 8798291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8806893 8807060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8812979 8813233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8818963 8819259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8821467 8821498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8824699 8826232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 8828908 8828946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5718 nt):
ATGGAGACACTGAACGGCCCCGCGGGCGGAGGTGCCCCGGACGCGAAGCTGCAGCCGCCCGGCCAGCACC
ACCGCCACCACCACCTCCACCCGGTGGCCGAAAGGCGGCGGCTGCACCGTGCGCCCTCGCCCGCCAGACC
CTTCCTCAAGGACCTGCACGCCCGGCCCGCCGCGCCCGGCCCGGCCGTCCCCTCCTCGGGCCGAGCCCCG
GCTCCCGCCGCCCCGCGCTCGCCCAACCTCGCGGGCAAAGCGCCGCCCTCGCCGGGGTCCCTGGCCGCGC
CCGGCCGCCTCTCTCGGCGCAGTGGCGGCGTCCCGGGCGCGAAGGACAAGCCCCCGCCGGGCGCCGGGGC
CAGAGCGGCGGGCGGTGCCAAGGCTGCCCTGGGAAGCAGGAGGGCGGCGCGCGTGGCGCCCGCGGAGCCG
CTGTCCCGGGCTGGGAAGCCTCCCGGAGCCGAGCCGCCGTCTGCCGCTGCCAAGGGCCGCAAAGCCAAGC
GCGGCTCCCGGGCGCCACCCGCCCGCACCGTCGGCCCCCCGACCCCGGCCGCCCGGATCCCTGCCGTGAC
CCTCGCGGTGACCTCGGTGGCCGGGTCCCCGGCCCGCTGCTCGCGCATCAGCCACACGGACAGCAGCTCC
GACCTCTCTGACTGCCCCTCCGAACCCCTGTCCGACGAGCAGCGCCTGCTCCCTGCCGCCAGCAGCGACG
CCGAATCCGGCACGGGCTCCAGCGACCGTGAACCCCCACGAGGAGCGCCGACGCCGAGCCCCGCAGCCCG
AGGAGCGCCGCCGGGCAGCCCCGAGCCCCCAGCGCTCCTCGCCGCGCCCCTCGCCGCGGGCGCCTGTCCC
GGGGGCCGGAGCATCCCGAGCGGGGTTTCGGGGGGTTTCGCGGGGCCCGGCGTGGCGGAGGATGTCCGGG
GGCGCTCGCCACCGGAGCGACCAGTCCCCGGGACCCCCAAGGAGCCCAGCCTGGGCGAGCAGTCTCGGCT
CGTGCCAGCGGCGGAGGAAGAAGAGCTGCTGCGGGAGATGGAGGAGCTGCGCTCGGAGAACGACTATCTC
AAGGATGAGTTAGATGAACTCCGTGCTGAGATGGAAGAGATGAGAGACAGTTATTTAGAGGAAGATGTTT
ACCAGCTGCAGGAACTTCGGCGAGAACTGGACCGCGCTAATAAAAACTGCCGAATCCTGCAGTACCGTCT
TCGGAAAGCCGAGCAGAAAAGCCTGAAAGTGGCTGAGACGGGTCAGGTGGATGGTGAGCTTATTCGAAGC
CTGGAGCAGGACTTGAAGGTAGCCAAAGATGTATCTGTCAGATTGCACCACGAACTTAAGACGGTGGAGG
AAAAGCGCGCTAAAGCTGAGGATGAAAACGAAACTCTCCGACAGCAGATGATTGAAGTGGAAATATCCAA
ACAGGCCCTCCAGAATGAGCTGGAGAGACTGAAAGAGAGTTCCCTAAAAAGAAGAAGCACTCGGGAAATG
TACAAGGAGAAGAAAACCTTTAACCAGGATGACAGTGCCGATTTGAGGTGCCAGCTCCAGTTTGCCAAAG
AGGAAGCCTTCCTGATGCGCAAAAAGATGGCCAAGCTAGGAAGGGAGAAGGACGAGCTGGAGCAGGAGCT
CCAGAAGTACAAGTCCCTCTATGGGGATGTGGACAGTCCCCTGCCCACGGGGGAAGCAGGCGGGCCCCCC
AGCACCCGGGAGGCCGAGCTGAAGCTGCGGCTAAAGCTGGTGGAGGAGGAAGCCAACATCTTGGGCCGGA
AGATCGTGGAGCTGGAGGTGGAGAACCGTGGCCTCAAGGCAGAGATGGAGGACATGCGGGGCCAGCAGGA
GCGGGAGGGCCCGGGTCGGGACCACGCACCCAGCATTCCTACCTCACCCTTCGGTGACTCCCTGGAGTCC
TCCACTGAGCTCCGCCGCCACCTGCAGTTTGTAGAAGAGGAAGCGGAGTTGCTCCGGAGGTCCATCTCCG
AGATCGAAGACCACAACCGGCAACTGACCCACGAGCTCAGCAAGTTTAAGTTTGAGCCTCCCCGGGAGCC
GGGCTGGCTAGGAGAGGGTGCAAGTCCTGGTGCCGGGGGTGGGGCCCCCCTGCAGGAGGAGCTGAAGTCA
GCCAGGCTGCAGATCAGCGAGCTCAGCGGCAAGGTGCTCAAACTGCAGCACGAGAACCACGCGCTGCTGT
CCAACATCCAGCGCTGCGACCTGGCAGCCCACCTGGGGCTGCGTGCCCCCAGTCCCCGGGACAGCGATGC
CGAGAGTGATGCGGGCAAGAAGGAGAGTGATGGGGAGGAGAGCCGCCTGCCCCAGCCCAAGCGGGAAGGG
CCTGTTGGCGGGGAGAGTGACTCGGAGGAAATGTTTGAGAAGACGTCGGGCTTCGGGAGCGGGAAGCCAT
CGGAGGCCAGCGAGCCATGCCCCACGGAGCTCCTGAAGGCCCGGGAGGACTCTGAGTACCTAGTGACCCT
AAAACACGAGGCCCAGCGGCTAGAGCGGACGGTGGAGCGCCTCATCACGGACACCGACAGCTTCCTCCAT
GATGCGGGGCTGCGGGGTGGTGCGCCCTTACCGGGGCCTGGCCTCCAGGGCGAAGAGGAGCAGGGTGAGG
GGGACCAGCAGGAGCCCCAGCTGCTGGGGACCATCAACGCCAAGATGAAGGCTTTCAAGAAAGAGCTGCA
GGCCTTCCTGGAGCAGGTGAACCGCATTGGGGATGGCCTATCCCCCTTGCCCCACCTCACAGAGTCCTCT
AGCTTCCTCTCCACTGTGACTTCCGTGTCCCGGGACTCCCCCATCGGGAACCTGGGGAAGGAGCTGGGCC
CAGACTTGCAGTCCAGACTGAAAGAGCAGCTGGAGTGGCAGCTCGGGCCGGCCCGAGGGGACGAGCGGGA
GAGCCTGCGCCTCCGAGCCGCGCGGGAGCTGCACCGCCGCGCAGACGGGGACACCGGGAGCCACGGGCTG
GGAGGCCAGACCTGCTTCAGCCTGGAGATGGAGGAGGAGCACCTCTATGCCTTGAGGTGGAAAGAACTGG
AAATGCACAGCCTGGCTTTGCAAAACACCCTCCATGAGCGAACCTGGAGTGATGAGAAGAATCTGATGCA
GCAGGAGCTCCGGTCCTTGAAGCAGAACATTTTCCTCTTCTACGTCAAACTCAGGTGGCTGCTGAAACAC
TGGCGGCAAGGGAAGCAGATGGAGGAGGAAGGAGAGGAGTTCACTGAGGGTGAACATCCAGAGACCCTCT
CCAGGCTCGGGGAGCTTGGAGTCCAGGGGGGTCACCAGGCGGATGGCCCAGACCACGACAGTGACCGAGG
CTGTGGCTTTCCAGTGGGGGAGCACTCCCCACACTCCCGGGTGCAGATTGGAGATCACAGCTTGCGGCTG
CAGACCGCGGACAGGGGACAGCCCCACAAACAGGTGGTGGAAAACCAGCAGCTGTTCAGCGCCTTCAAGG
CCTTGCTGGAGGACTTCCGTGCGGAGCTGCGGGAGGATGAGCGTGCCCGACTACGGCTGCAGCAGCAATA
TGCCAGCGACAAGGCGGCCTGGGACGTGGAGTGGGCCGTGCTCAAGTGCCGTCTGGAACAGCTGGAAGAG
AAGACTGAGAACAAGTTGGGAGAACTAGGCTCCTCCGCTGAGAGCAAGGGGGCCTTGAAGAAGGAGAGAG
AGGTGCACCAGAAGCTCCTGGCAGACAGTCACAGCCTGGTCATGGACCTGCGCTGGCAGATCCATCACAG
CGAGAAGAACTGGAACCGGGAGAAGGTGGAACTTCTCGACCGCCTGGACAGAGATCGGCAGGAGTGGGAG
CGGCAGAAGAAGGAATTCTTGTGGAGGATAGAGCAGTTGCAGAAAGAGAACAGTCCCCGGAGAGGTGGCA
GTTTCCTCTGTGATCAAAAAGACGGCAACGTTCGCCCCTTTCCCCACCAGGGAAGCCTCCGCATGCCCCG
TCCAGTGGCCATGTGGCCTTGTGCAGATGCTGACTCCATCCCGTTTGAAGACCGGCCGCTGTCCAAGCTG
AAGGAGTCGGACAGGTGCTCGGCCAGTGAGAATCTCTACCTGGATGCCTTGTCCCTGGATGACGAGCCAG
AAGAGCCACCAGCCCACAGGCCCGAGAGGGAGTTCAGGAACCGCCTCCCTGAGGAAGAAGAAAATCACAA
AGGAAATCTTCAAAGGGCGGTGTCCGTGTCCTCCATGTCTGAGTTCCAGCGTCTAATGGACATCTCCCCC
TTCCTGCCTGAGAAGGGCCTGCCGTCCACCAGCAGCAAGGAGGATGTCACCCCACCCCTGTCTCCAGACG
ACCTCAAGTACATCGAGGAGTTCAACAAGAGCTGGGACTACACACCCAACAGGGGCCACAATGGTGGGGG
GCCGGACCTTTGGGCCGACAGGACCGAGGTGGGGCGGGCAGGGCACGAGGACAGCACAGAGCCTTTCCCC
GACTCCTCCTGGTACCTAACCACAAGTGTCACCATGACCACGGACACCATGACCAGCCCAGAGCACTGCC
AGAAGCAGCCACTGCGGAGCCACGTCCTCACCGAGCAGTCGGGGTTGCGCGTGTTACACAGCCCGCCTGC
CGTGCGCAGGGTCGACAGCATCACGGCGGCAGGTGGTGAGGGTCCCTTTCCCACAAGCAGAGCCAGAGGG
AGCCCGGGAGACACCAAGGGAGGCCCTCCAGAACCCATGCTCAGCAGGTGGCCTTGCACCTCCCCCAGGC
ACTCCCGGGACTATGTGGAGGGGGCACGGCGCCCCCTTGATAGTCCCCTCTGTACCTCCCTGGGGTTTGC
CTCCCCACTGCACAGCCTGGAGATGTCCAAGAACTTGAGTGATGACATGAAGGAGGTGGCCTTCTCTGTC
AGGAATGCCATCTGCTCCGGCCCTGGCGAGCTGCAAGTCAAGGACATGGCCTGCCAGACCAATGGGTCCC
GGACGATGGGGACCCAGACTGTTCAGACCATCAGTGTGGGCTTGCAGACTGAAGCCCTGCGTGGCAGCGG
TGTCACCAGCAGCCCCCACAAGTGTCTCACTCCAAAGGCTGGGGGCGGTGCTACACCCGTGTCGTCTCCT
TCCCGGAGCCTTAGGAGCAGACAGGTGGCCCCTGCCATCGAGAAGGTGCAGGCCAAGTTTGAACGCACAT
GCTGCTCCCCCAAGTATGGTTCTCCCAAGCTGCAGAGGAAGCCCCTCCCCAAAGCCGACCAGCCAAATAA
CAGGACGTCACCAGGGATGGCCCAGAAAGGGTACAGTGAGTCAGCCTGGGCCCGCTCCACCACCACAAGG
GAGAGCCCCGTGCACACCACCATTAATGATGGCCTCTCCAGCCTCTTCAACATCATTGACCACAGCCCCG
TGGTGCAGGACCCCTTCCAGAAGGGGCTGCGGGCCGGCAGTCGGTCTCGCTCAGCAGAGCCCCGACCAGA
GCTGGGCCCAGGCCAGGAAACAGGCACCAATTCCCGAGGAAGGTCGCCTAGCCCCATTGGGGTGGGGTCA
GAGATGTGCAGGGAGGAAGGGGGAGAGGGCACGCCAGTGAAGCAGGACTTATCTGCTCCCCCTGGCTACA
CGCTCACTGAGAACGTGGCCCGGATCCTCAACAAGAAGCTGCTGGAACATGCCTTAAAGGAGGAGAGGAG
GCAGGCTGCCCACGGGCCCCCGGGTCTCCACAGTGACAGCCACTCGCTGGGGGACACAGCCGAGCCAGGG
CCCATGGAGAACCAAACTGTCTTGCTAACTGCCCCCTGGGGACTCTAG

Translation (1905 aa):
METLNGPAGGGAPDAKLQPPGQHHRHHHLHPVAERRRLHRAPSPARPFLKDLHARPAAPGPAVPSSGRAP
APAAPRSPNLAGKAPPSPGSLAAPGRLSRRSGGVPGAKDKPPPGAGARAAGGAKAALGSRRAARVAPAEP
LSRAGKPPGAEPPSAAAKGRKAKRGSRAPPARTVGPPTPAARIPAVTLAVTSVAGSPARCSRISHTDSSS
DLSDCPSEPLSDEQRLLPAASSDAESGTGSSDREPPRGAPTPSPAARGAPPGSPEPPALLAAPLAAGACP
GGRSIPSGVSGGFAGPGVAEDVRGRSPPERPVPGTPKEPSLGEQSRLVPAAEEEELLREMEELRSENDYL
KDELDELRAEMEEMRDSYLEEDVYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRS
LEQDLKVAKDVSVRLHHELKTVEEKRAKAEDENETLRQQMIEVEISKQALQNELERLKESSLKRRSTREM
YKEKKTFNQDDSADLRCQLQFAKEEAFLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPP
STREAELKLRLKLVEEEANILGRKIVELEVENRGLKAEMEDMRGQQEREGPGRDHAPSIPTSPFGDSLES
STELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPPREPGWLGEGASPGAGGGAPLQEELKS
ARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLGLRAPSPRDSDAESDAGKKESDGEESRLPQPKREG
PVGGESDSEEMFEKTSGFGSGKPSEASEPCPTELLKAREDSEYLVTLKHEAQRLERTVERLITDTDSFLH
DAGLRGGAPLPGPGLQGEEEQGEGDQQEPQLLGTINAKMKAFKKELQAFLEQVNRIGDGLSPLPHLTESS
SFLSTVTSVSRDSPIGNLGKELGPDLQSRLKEQLEWQLGPARGDERESLRLRAARELHRRADGDTGSHGL
GGQTCFSLEMEEEHLYALRWKELEMHSLALQNTLHERTWSDEKNLMQQELRSLKQNIFLFYVKLRWLLKH
WRQGKQMEEEGEEFTEGEHPETLSRLGELGVQGGHQADGPDHDSDRGCGFPVGEHSPHSRVQIGDHSLRL
QTADRGQPHKQVVENQQLFSAFKALLEDFRAELREDERARLRLQQQYASDKAAWDVEWAVLKCRLEQLEE
KTENKLGELGSSAESKGALKKEREVHQKLLADSHSLVMDLRWQIHHSEKNWNREKVELLDRLDRDRQEWE
RQKKEFLWRIEQLQKENSPRRGGSFLCDQKDGNVRPFPHQGSLRMPRPVAMWPCADADSIPFEDRPLSKL
KESDRCSASENLYLDALSLDDEPEEPPAHRPEREFRNRLPEEEENHKGNLQRAVSVSSMSEFQRLMDISP
FLPEKGLPSTSSKEDVTPPLSPDDLKYIEEFNKSWDYTPNRGHNGGGPDLWADRTEVGRAGHEDSTEPFP
DSSWYLTTSVTMTTDTMTSPEHCQKQPLRSHVLTEQSGLRVLHSPPAVRRVDSITAAGGEGPFPTSRARG
SPGDTKGGPPEPMLSRWPCTSPRHSRDYVEGARRPLDSPLCTSLGFASPLHSLEMSKNLSDDMKEVAFSV
RNAICSGPGELQVKDMACQTNGSRTMGTQTVQTISVGLQTEALRGSGVTSSPHKCLTPKAGGGATPVSSP
SRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPLPKADQPNNRTSPGMAQKGYSESAWARSTTTR
ESPVHTTINDGLSSLFNIIDHSPVVQDPFQKGLRAGSRSRSAEPRPELGPGQETGTNSRGRSPSPIGVGS
EMCREEGGEGTPVKQDLSAPPGYTLTENVARILNKKLLEHALKEERRQAAHGPPGLHSDSHSLGDTAEPG
PMENQTVLLTAPWGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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