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Report for CCDS93034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93034.1 Public Homo sapiens 20 DLGAP4 24 110 108 CCDS HistoryNCBI Gene:22839Re-query CCDS DB by CCDS ID:93034.1Re-query CCDS DB by GeneID:22839See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93034.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339266.10 ENSP00000341633.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339266.10Link to Ensembl Protein Viewer:ENSP00000341633.5Re-query CCDS DB by Nucleotide ID:ENST00000339266Re-query CCDS DB by Protein ID:ENSP00000341633
Original member Current member EBI ENST00000373907.6 ENSP00000363014.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373907.6Link to Ensembl Protein Viewer:ENSP00000363014.2Re-query CCDS DB by Nucleotide ID:ENST00000373907Re-query CCDS DB by Protein ID:ENSP00000363014
Original member Current member NCBI NM_001365621.2 NP_001352550.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365621.2Link to Protein Sequence:NP_001352550.1Re-query CCDS DB by Nucleotide ID:NM_001365621Re-query CCDS DB by Protein ID:NP_001352550Link to BLAST:NP_001352550.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352550.1 992 Q9Y2H0-2 992 100% 0 0

Chromosomal Locations for CCDS 93034.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36431718 36432716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36436109 36436350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36439754 36439868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36442727 36442777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36446697 36446937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36496705 36497066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36499588 36499676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36500199 36500611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36524250 36524341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36525851 36526006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36526813 36527031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2979 nt):
ATGAAAGGCCTCGGTGACAGCCGCCCCCGCCACCTCTCCGACAGCCTAGACCCACCCCACGAGCCCCTGT
TTGCAGGGACCGACCGCAACCCCTACCTGCTGTCGCCCACGGAGGCCTTCGCCCGCGAGGCCCGCTTCCC
CGGGCAGAACACCCTGCCAGGAGATGGCCTCTTTCCCCTCAACAACCAGCTGCCCCCGCCCAGCAGCACC
TTTCCCCGCATCCACTACAACTCCCACTTCGAGGTGCCAGAGGAGAGCCCCTTCCCCAGCCATGCCCAAG
CCACCAAGATCAACCGGCTGCCCGCCAACCTCCTGGACCAGTTTGAGAAGCAGCTGCCCATCCACCGTGA
TGGCTTCAGCACCCTCCAATTTCCCCGTGGCGAGGCCAAGGCCCGTGGTGAGAGCCCTGGCCGCATCCGC
CACCTGGTCCACTCAGTCCAGCGGCTTTTCTTCACCAAGGCACCCTCACTGGAGGGCACAGCGGGCAAGG
TCGGTGGCAATGGCAGCAAGAAGGGTGGCATGGAGGACGGCAAGGGCCGGAGGGCCAAAAGCAAGGAGCG
GGCCAAGGCTGGGGAGCCCAAACGGCGCAGCCGCTCCAACATCTCAGGCTGGTGGAGCTCCGATGACAAC
TTGGACGGCGAGGCCGGCGCCTTCCGCAGCAGTGGCCCAGCCTCTGGGCTGATGACACTAGGCCGCCAGG
CAGAACGCAGCCAGCCACGCTACTTCATGCACGCCTACAACACCATCAGTGGGCACATGCTCAAAACCAC
CAAGAACAACACTACTGAGCTGACTGCCCCACCACCCCCGCCCGCACCCCCAGCCACCTGCCCCAGCCTT
GGGGTGGGCACTGACACCAACTACGTCAAACGGGGCTCCTGGTCCACTCTGACCCTCAGCCACGCCCACG
AGGTCTGCCAGAAGACCTCAGCCACCTTGGATAAGAGCCTGCTCAAGTCCAAATCCTGCCACCAGGGTCT
AGCCTACCATTACCTGCAGGTGCCCGGCGGCGGCGGCGAGTGGAGCACCACGCTGCTGTCCCCACGCGAG
ACGGATGCCGCGGCCGAGGGCCCTATCCCGTGCCGGCGCATGCGCAGCGGCAGCTACATCAAGGCCATGG
GCGACGAGGACAGCGACGAGTCCGGCGGCAGCCCCAAGCCCTCACCCAAGACCGCGGCGCGGCGCCAGAG
CTATCTGAGGGCCACGCAGCAGTCGCTGGGAGAGCAGAGCAACCCCCGCAGGAGTCTGGACCGCCTGGAT
TCAGTGGACATGCTGCTGCCCTCCAAGTGTCCGAGCTGGGAAGAGGACTACACCCCCGTCAGCGACAGCC
TCAACGACTCCAGCTGCATCAGCCAGATTTTTGGACAGGCCTCCCTGATCCCCCAGTTGTTTGGCCATGA
GCAGCAGGTACGGGAGGCAGAGCTGAGTGACCAGTATGAGGCGGCCTGCGAGTCAGCCTGCAGTGAAGCG
GAGTCCACAGCGGCAGAGACGCTTGACTTGCCACTGCCCAGCTACTTCCGCTCCCGCAGCCACAGCTACC
TGCGTGCCATCCAGGCAGGCTGCTCGCAGGAGGAGGACAGTGTCTCCCTGCAGTCCCTCTCCCCACCGCC
CAGTACCGGCAGCCTCAGCAATAGTCGCACGCTTCCGAGTTCATCATGCCTAGTGGCGTATAAGAAGACC
CCGCCACCGGTCCCTCCACGCACCACTTCAAAGCCGTTCATCTCAGTCACAGTCCAGAGCAGTACTGAGT
CTGCCCAGGACACCTACCTGGACAGCCAGGACCACAAGAGCGAGGTGACTAGCCAGTCGGGCCTGAGCAA
CTCGTCGGACAGCCTGGACAGCAGTACCCGACCGCCCAGCGTGACACGGGGTGGAGTCGCCCCAGCCCCT
GAGGCCCCAGAGCCACCCCCAAAACATGCAGCTCTGAAAAGTGAACAAGGGACGCTGACCAGCTCTGAGT
CCCACCCCGAGGCCGCCCCCAAAAGGAAACTGTCATCGATAGGAATACAAGTTGACTGCATTCAGCCAGT
GCCAAAAGAGGAGCCCAGTCCCGCTACCAAATTCCAGTCCATCGGGGTTCAGGTAGAGGACGACTGGCGA
AGCAGCGTCCCCTCTCACAGTATGTCCTCCCGACGGGACACAGACTCGGATACCCAGGATGCCAATGACT
CAAGCTGTAAGTCATCTGAGAGGAGCCTCCCGGACTGTACCCCTCACCCCAACTCCATCAGCATCGATGC
CGGTCCCCGGCAGGCCCCCAAGATTGCCCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCGACCCT
GCCCTAGAGGCGTCCTCGCTGCCCCCACCCGACCCCTGGCTCGAGACCTCCTCCAGCTCCCCAGCAGAGC
CGGCACAGCCAGGGGCCTGCCGCCGAGACGGCTACTGGTTCCTAAAGCTACTGCAGGCAGAAACAGAGCG
GCTGGAAGGCTGGTGCTGCCAGATGGACAAGGAGACCAAAGAGAACAACCTCTCTGAAGAAGTCTTAGGA
AAAGTCCTCAGTGCTGTGGGCAGTGCCCAGCTACTGATGTCCCAGAAATTCCAGCAGTTCCGGGGCCTCT
GTGAGCAAAACTTGAACCCTGATGCCAACCCACGCCCCACAGCCCAGGACCTGGCAGGGTTCTGGGACCT
GCTACAGCTGTCCATCGAGGATATCAGCATGAAGTTCGATGAACTCTACCACCTCAAGGCCAACAGCTGG
CAGCTGGTGGAGACCCCCGAGAAGAGGAAGGAAGAGAAGAAACCACCCCCTCCGGTCCCAAAGAAGCCAG
CCAAATCCAAGCCGGCAGTGAGCCGCGACAAGGCCTCAGACGCCAGCGACAAGCAGCGCCAGGAGGCCCG
CAAGAGACTCCTGGCGGCCAAGCGGGCAGCTTCTGTGCGGCAGAACTCAGCCACCGAGAGCGCAGACAGC
ATCGAGATTTATGTCCCGGAGGCCCAGACCAGGCTCTGA

Translation (992 aa):
MKGLGDSRPRHLSDSLDPPHEPLFAGTDRNPYLLSPTEAFAREARFPGQNTLPGDGLFPLNNQLPPPSST
FPRIHYNSHFEVPEESPFPSHAQATKINRLPANLLDQFEKQLPIHRDGFSTLQFPRGEAKARGESPGRIR
HLVHSVQRLFFTKAPSLEGTAGKVGGNGSKKGGMEDGKGRRAKSKERAKAGEPKRRSRSNISGWWSSDDN
LDGEAGAFRSSGPASGLMTLGRQAERSQPRYFMHAYNTISGHMLKTTKNNTTELTAPPPPPAPPATCPSL
GVGTDTNYVKRGSWSTLTLSHAHEVCQKTSATLDKSLLKSKSCHQGLAYHYLQVPGGGGEWSTTLLSPRE
TDAAAEGPIPCRRMRSGSYIKAMGDEDSDESGGSPKPSPKTAARRQSYLRATQQSLGEQSNPRRSLDRLD
SVDMLLPSKCPSWEEDYTPVSDSLNDSSCISQIFGQASLIPQLFGHEQQVREAELSDQYEAACESACSEA
ESTAAETLDLPLPSYFRSRSHSYLRAIQAGCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSSCLVAYKKT
PPPVPPRTTSKPFISVTVQSSTESAQDTYLDSQDHKSEVTSQSGLSNSSDSLDSSTRPPSVTRGGVAPAP
EAPEPPPKHAALKSEQGTLTSSESHPEAAPKRKLSSIGIQVDCIQPVPKEEPSPATKFQSIGVQVEDDWR
SSVPSHSMSSRRDTDSDTQDANDSSCKSSERSLPDCTPHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDP
ALEASSLPPPDPWLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCCQMDKETKENNLSEEVLG
KVLSAVGSAQLLMSQKFQQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSW
QLVETPEKRKEEKKPPPPVPKKPAKSKPAVSRDKASDASDKQRQEARKRLLAAKRAASVRQNSATESADS
IEIYVPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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