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Report for CCDS93080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93080.1 Public Homo sapiens 21 LIPI 24 110 108 CCDS HistoryNCBI Gene:149998Re-query CCDS DB by CCDS ID:93080.1Re-query CCDS DB by GeneID:149998See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 93080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000681601.1 ENSP00000505323.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000681601.1Link to Ensembl Protein Viewer:ENSP00000505323.1Re-query CCDS DB by Nucleotide ID:ENST00000681601Re-query CCDS DB by Protein ID:ENSP00000505323
Original member Current member NCBI NM_001302998.2 NP_001289927.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001302998.2Link to Protein Sequence:NP_001289927.1Re-query CCDS DB by Nucleotide ID:NM_001302998Re-query CCDS DB by Protein ID:NP_001289927Link to BLAST:NP_001289927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289927.1 460 Q6XZB0-1 460 100% 0 0

Chromosomal Locations for CCDS 93080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 14108993 14109080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14144623 14144799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14152573 14152684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14163419 14163523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14165223 14165390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14166362 14166451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14181758 14181859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14185961 14186069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14189034 14189419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14210800 14210845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGAGAGTATACATTTTTCTTTGTTTGATGTGCTGGGTGAGATCTGATAATAAAAGACCATGCCTTGAAT
TCTCTCAGCTAAGTGTAAAGGATTCCTTCAGAGATTTATTTATTCCGAGAATAGAGACCATTCTGATGAT
GTATACAAGGAACAACCTAAACTGTGCTGAGCCACTGTTTGAACAAAATAACTCACTTAATGTTAATTTC
AACACACAAAAGAAAACAGTCTGGCTTATTCACGGATACAGACCAGTAGGCTCCATCCCATTATGGCTTC
AGAACTTCGTAAGGATTTTGCTGAATGAAGAAGATATGAATGTAATTGTAGTAGACTGGAGCCGGGGTGC
TACAACTTTTATTTATAATAGAGCAGTTAAAAACACCAGAAAAGTTGCTGTGAGTTTGAGTGTGCACATT
AAAAATCTTTTGAAGCATGGTGCATCTCTTGACAATTTTCATTTCATAGGTGTGAGCTTAGGGGCTCATA
TCAGTGGATTTGTTGGAAAGATATTTCATGGTCAACTTGGAAGAATAACAGGTCTTGACCCTGCTGGGCC
AAGGTTCTCCAGAAAACCACCATATAGCAGATTAGATTACACGGATGCAAAGTTTGTGGATGTCATCCAT
TCTGACTCCAATGGTTTAGGCATTCAAGAGCCCTTGGGACATATAGATTTTTATCCAAATGGAGGAAATA
AACAACCTGGCTGTCCTAAATCAATTTTCTCAGGAATTCAATTCATTAAATGCAACCACCAGAGAGCAGT
TCACTTGTTCATGGCATCTTTAGAAACAAACTGCAATTTTATTTCATTTCCTTGTCGTTCATACAAAGAT
TACAAGACTAGCTTATGTGTGGACTGTGACTGTTTTAAGGAAAAATCATGTCCTCGGCTGGGTTATCAAG
CCAAGCTATTTAAAGGTGTTTTAAAAGAAAGGATGGAAGGAAGACCTCTTAGGACCACTGTGTTTTTGGA
TACAAGTGGTACATATCCATTCTGTACCTATTATTTTGTTCTCAGTATAATTGTTCCAGATAAAACTATG
ATGGATGGCTCGTTTTCATTTAAATTATTAAATCAGCTTGGAATGATTGAAGAGCCAAGGCTTTATGAAA
AGAACAAACCATTTTATAAACTTCAAGAAGTCAAGATTCTTGCTCAATTTTATAATGACTTTGTAAATAT
TTCAAGCATTGGTTTGACATATTTCCAGAGCTCAAATCTGCAGTGTTCCACATGCACATACAAGATCCAG
AGTCTCATGTTAAAATCACTTACATACCCAGAAAGACCACCACTTTGCAGGTATAATATTGTACTTAAAG
ACAGAGAGGAAGTGTTTCTTAATCCAAACACATGTACACCAAAGAACACATAA

Translation (460 aa):
MRVYIFLCLMCWVRSDNKRPCLEFSQLSVKDSFRDLFIPRIETILMMYTRNNLNCAEPLFEQNNSLNVNF
NTQKKTVWLIHGYRPVGSIPLWLQNFVRILLNEEDMNVIVVDWSRGATTFIYNRAVKNTRKVAVSLSVHI
KNLLKHGASLDNFHFIGVSLGAHISGFVGKIFHGQLGRITGLDPAGPRFSRKPPYSRLDYTDAKFVDVIH
SDSNGLGIQEPLGHIDFYPNGGNKQPGCPKSIFSGIQFIKCNHQRAVHLFMASLETNCNFISFPCRSYKD
YKTSLCVDCDCFKEKSCPRLGYQAKLFKGVLKERMEGRPLRTTVFLDTSGTYPFCTYYFVLSIIVPDKTM
MDGSFSFKLLNQLGMIEEPRLYEKNKPFYKLQEVKILAQFYNDFVNISSIGLTYFQSSNLQCSTCTYKIQ
SLMLKSLTYPERPPLCRYNIVLKDREEVFLNPNTCTPKNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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