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Report for CCDS93239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93239.1 Public Homo sapiens 3 DCLK3 24 110 108 CCDS HistoryNCBI Gene:85443Re-query CCDS DB by CCDS ID:93239.1Re-query CCDS DB by GeneID:85443See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93239.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636136.2 ENSP00000489900.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000636136.2Link to Ensembl Protein Viewer:ENSP00000489900.1Re-query CCDS DB by Nucleotide ID:ENST00000636136Re-query CCDS DB by Protein ID:ENSP00000489900
Original member Current member NCBI NM_001394672.2 NP_001381601.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394672.2Link to Protein Sequence:NP_001381601.1Re-query CCDS DB by Nucleotide ID:NM_001394672Re-query CCDS DB by Protein ID:NP_001381601Link to BLAST:NP_001381601.1

Chromosomal Locations for CCDS 93239.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 36715328 36715521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36718010 36718177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36721527 36721659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36737208 36739084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36764182 36764263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2454 nt):
ATGCCCGCCGCCACTCCAGCCCCGCAGCCGCCGCCGCCCCCGGCCCGGCCAGCCCCAGCCTGCCCGGCGC
GGCCTGCCCCGGGACAGCAAGGCCTATGTGACCATTCTCTAAAATATTTAAGCTCGAGAATCACAGAGCG
GAAGCTGCAAGGCTCCTGGCTGCCTGCCAGCCGAGGGAATCTGGAGAAACCATTCCTGGGGCCGCGTGGC
CCCGTCGTGCCCTTGTTCTGCCCTCGGAATGGCCTTCACTCAGCACATCCTGAGAACAGCCCTCTGAAGC
CCAGGGTCGTGACCGTAGTGAAGCTGGGTGGGCAGCGCCCCCGAAAGATCACTCTGCTCCTCAACAGGCG
ATCAGTGCAGACGTTCGAGCAGCTCTTAGCTGACATCTCAGAAGCCTTGGGCTCTCCCAGATGGAAGAAT
GACCGTGTGAGGAAACTGTTTAACCTCAAGGGCAGGGAAATCAGGAGCGTCTCTGATTTCTTCAGGGAAG
GGGATGCTTTCATAGCTATGGGCAAAGAACCACTGACACTGAAGAGCATTCAGGTGGCTGTAGAAGAACT
GTACCCCAACAAAGCCCGGGCCCTGACACTGGCCCAGCACAGCCGTGCCCCTTCTCCAAGGCTGAGGAGC
AGGCTGTTTAGCAAGGCTCTGAAAGGAGACCACCGCTGTGGGGAGACCGAGACCCCCAAGAGCTGCAGCG
AAGTTGCAGGATGCAAGGCAGCCATGAGGCACCAGGGGAAGATCCCCGAGGAGCTTTCACTAGATGACAG
AGCGAGGACCCAGAAGAAGTGGGGGAGGGGGAAATGGGAGCCAGAACCCAGTAGCAAGCCCCCCAGGGAA
GCCACTCTGGAAGAGAGGCACGCAAGGGGAGAGAAGCATCTTGGGGTGGAGATTGAAAAGACCTCGGGTG
AAATTATCAGATGCGAGAAGTGCAAGAGAGAGAGGGAGCTCCAGCAGAGCCTGGAGCGTGAGAGGCTTTC
TCTGGGGACCAGTGAGCTGGATATGGGGAAGGGCCCAATGTATGATGTGGAGAAGCTGGTGAGGACCAGA
AGCTGCAGGAGGTCTCCCGAGGCAAATCCTGCAAGTGGGGAGGAAGGGTGGAAGGGTGACAGCCACAGGA
GCAGCCCCAGGAATCCCACTCAAGAGCTGAGGAGACCCAGCAAGAGCATGGACAAGAAAGAGGACAGAGG
CCCAGAGGATCAAGAAAGCCATGCTCAGGGAGCAGCCAAGGCCAAGAAGGACCTTGTGGAAGTTCTTCCT
GTCACAGAGGAGGGGCTGAGGGAGGTGAAGAAGGACACCAGGCCCATGAGCAGGAGCAAACATGGTGGCT
GGCTCCTGAGAGAGCACCAGGCGGGCTTTGAGAAGCTCCGCAGGACCCGAGGAGAAGAGAAGGAGGCAGA
GAAGGAGAAAAAGCCATGTATGTCTGGAGGCAGAAGGATGACTCTCAGAGATGACCAACCTGCAAAGCTA
GAAAAGGAGCCCAAGACGAGGCCAGAAGAGAACAAGCCAGAGCGGCCCAGCGGTCGGAAGCCACGGCCCA
TGGGCATCATTGCCGCCAATGTGGAAAAGCATTATGAGACTGGCCGGGTCATTGGGGATGGGAACTTTGC
TGTCGTGAAGGAGTGCAGACACCGCGAGACCAGGCAGGCCTATGCGATGAAGATCATTGACAAGTCCAGA
CTCAAGGGCAAGGAGGACATGGTGGACAGTGAGATCTTGATCATCCAGAGCCTCTCTCACCCCAACATCG
TGAAATTGCATGAAGTCTACGAAACAGACATGGAAATCTACCTGATCCTGGAGTACGTGCAGGGAGGAGA
CCTTTTTGACGCCATCATAGAAAGTGTGAAGTTCCCGGAGCCCGATGCTGCCCTCATGATCATGGACTTA
TGCAAAGCCCTCGTCCACATGCACGACAAGAGCATTGTCCACCGGGACCTCAAGCCGGAAAACCTTTTGG
TTCAGCGAAATGAGGACAAATCTACTACCTTGAAATTGGCTGATTTTGGACTTGCAAAGCATGTGGTGAG
ACCTATATTTACTGTGTGTGGGACCCCAACTTACGTAGCTCCCGAAATTCTTTCTGAGAAAGGTTATGGA
CTGGAGGTGGACATGTGGGCTGCTGGCGTGATCCTCTATATCCTGCTGTGTGGCTTTCCCCCATTCCGCA
GCCCTGAGAGGGACCAGGACGAGCTCTTTAACATCATCCAGCTGGGCCACTTTGAGTTCCTCCCCCCTTA
CTGGGACAATATCTCTGATGCTGCTAAAGATCTGGTGAGCCGGTTGCTGGTGGTAGACCCCAAAAAGCGC
TACACAGCTCATCAGGTTCTTCAGCACCCCTGGATCGAAACAGCTGGCAAGACCAATACAGTGAAACGAC
AGAAGCAGGTGTCCCCCAGCAGCGAGGGTCACTTCCGGAGCCAGCACAAGAGGGTTGTGGAGCAGGTATC
ATAG

Translation (817 aa):
MPAATPAPQPPPPPARPAPACPARPAPGQQGLCDHSLKYLSSRITERKLQGSWLPASRGNLEKPFLGPRG
PVVPLFCPRNGLHSAHPENSPLKPRVVTVVKLGGQRPRKITLLLNRRSVQTFEQLLADISEALGSPRWKN
DRVRKLFNLKGREIRSVSDFFREGDAFIAMGKEPLTLKSIQVAVEELYPNKARALTLAQHSRAPSPRLRS
RLFSKALKGDHRCGETETPKSCSEVAGCKAAMRHQGKIPEELSLDDRARTQKKWGRGKWEPEPSSKPPRE
ATLEERHARGEKHLGVEIEKTSGEIIRCEKCKRERELQQSLERERLSLGTSELDMGKGPMYDVEKLVRTR
SCRRSPEANPASGEEGWKGDSHRSSPRNPTQELRRPSKSMDKKEDRGPEDQESHAQGAAKAKKDLVEVLP
VTEEGLREVKKDTRPMSRSKHGGWLLREHQAGFEKLRRTRGEEKEAEKEKKPCMSGGRRMTLRDDQPAKL
EKEPKTRPEENKPERPSGRKPRPMGIIAANVEKHYETGRVIGDGNFAVVKECRHRETRQAYAMKIIDKSR
LKGKEDMVDSEILIIQSLSHPNIVKLHEVYETDMEIYLILEYVQGGDLFDAIIESVKFPEPDAALMIMDL
CKALVHMHDKSIVHRDLKPENLLVQRNEDKSTTLKLADFGLAKHVVRPIFTVCGTPTYVAPEILSEKGYG
LEVDMWAAGVILYILLCGFPPFRSPERDQDELFNIIQLGHFEFLPPYWDNISDAAKDLVSRLLVVDPKKR
YTAHQVLQHPWIETAGKTNTVKRQKQVSPSSEGHFRSQHKRVVEQVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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