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Report for CCDS94461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94461.1 Public Homo sapiens 9 SHOC1 24 110 108 CCDS HistoryNCBI Gene:158401Re-query CCDS DB by CCDS ID:94461.1Re-query CCDS DB by GeneID:158401See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 94461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000682961.1 ENSP00000508388.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682961.1Link to Ensembl Protein Viewer:ENSP00000508388.1Re-query CCDS DB by Nucleotide ID:ENST00000682961Re-query CCDS DB by Protein ID:ENSP00000508388
Original member Current member NCBI NM_001378211.1 NP_001365140.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378211.1Link to Protein Sequence:NP_001365140.1Re-query CCDS DB by Nucleotide ID:NM_001378211Re-query CCDS DB by Protein ID:NP_001365140Link to BLAST:NP_001365140.1

Chromosomal Locations for CCDS 94461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111686770 111686870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111691551 111692511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111693799 111693948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111694231 111694362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111699954 111700047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111702105 111702226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111703881 111703992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111705247 111705364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111706568 111706746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111707855 111707924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111713100 111713172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111714445 111714623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111718184 111718288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111722409 111722585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111723792 111723911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111727633 111728049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111738280 111738522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111741476 111741570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111746234 111746342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111748092 111748199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111756325 111756478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111758084 111758195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111758695 111758848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111775791 111775975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111780930 111781017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111785912 111786035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111791374 111791418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4527 nt):
ATGTTTTCAGCATTGAAATATCATGCAATAGACTATTTATATGAGAATGTGGTTAGAAAGAAGTTTTACA
GAGATGCTTTATTGCTTCGAATCCCTTCATGTTTATATCAAGATGAAAGTTACCATGTAGCAGTTACTGA
TAATAAATTTAGGAGGCCATGGACGAGAGTCTCAGCTGTTTCAGTTCCGGGAATGACAGATACCTCAGTC
TTGGACCAATGGAAAGCAAGTTTCTTTGTGGAGGATTTCCTTGAGAAAAAAACAATTACAAGAATGGTGA
CCCAGATTAATTGTGAATTTGAGGAAGTTGTTCCAAGTTCAAATCCAGACTCCCAAATTGAAGTAGAGGA
GGTCAGTTTATACACCCACATGGACTACAATGAAGTCTTTACCCCTGTCAGTTGTTTAGAAAAATGTTCA
GCACTTCAAAACCAGAACCAAGATTTATTTATTGATGATAAAGGAATACTTTTTGTAAGTAGTAGAAAAC
ACCTACCAACTTTGCCTACTCTCTTGAGTAGACTAAAACTGTTTTTGGTAAAGGATCCTCTTTTAGATTT
CAAAGGACAGATCTTCACAGAAGCTAATTTTTCCAGGGAATGTTTCTCTCTTCAAGAAACTTTGGAAGCT
TTTGTGAAAGAAGATTTTTGTATGGATAAAGTGAACTTTTGTCAAGAGAAACTAGAAGATACAATATGTT
TAAATGAGCCGTCAAGTTTTCTTATTGAGTATGAATTCTTAATACCTCCAAGCCTCAAACCAGAAATTGA
TATTCCATCACTCTCAGAACTGAAGGAGTTATTAAACCCAGTGCCAGAAATAATAAACTATGTAGATGAA
AAGGAAAAGCTTTTTGAAAGAGATCTTACTAACAAGCATGGAATTGAGGATATCGGGGATATAAAATTCA
GCTCCACAGAGATTTTGACCATTCAAAGCCAGAGTGAACCAGAAGAGTGCAGTAAACCAGGAGAGTTAGA
AATGCCACTAACTCCTCTATTCCTAACATGCCAACATTCTTCAGTGAATTCATTACGTACAGAACTTCAG
ACATTTCCATTATCTCCGGTTTGTAAAATTAATTTGCTTACTGCTGAAGAATCAGCTAATGAATACTACA
TGATGTGGCAATTAGAAAGATGTAGAAGCCCTTTGAACCCATTTTTGCTTACAGTGCCAAGAATTCAAGA
GCCCCACAGCCAATATTCAGTTACAGATTTGAAAAAGATATTTTCTGTTAAAGAAGAAAGCCTTGTGATT
AATCTGGAAAAGGCAGAGTGGTGGAAACAAGCAGGACTAAATCTGAAAATGATGGAAACATTGGAACATC
TGAATACATATTTATGTCATGATAATTTGTCTTCTAATGACACTAAAATTGAGATATTTTTGCCTACGAA
AGTGCTTCAATTAGAATCATGTCTAGAACATAAAAGTCATTCTTCACCTATTGCACTTATTGATGAAAAA
TCTACAAATGCTCATTTATCACTTCCACAAAAGAGTCCATCTCTGGCAAAAGAAGTACCAGATCTATGTT
TTTCTGATGACTATTTCTCTGATAAAGGAGCAGCAAAAGAAGAAAAACCAAAGAATGACCAAGAACCAGT
AAACAGAATAATCCAAAAGAAAGAAAATAACGATCACTTTGAACTTGACTGCACAGGACCATCTATTAAA
TCACCTTCCTCTTCAATAATTAAAAAAGCATCTTTTGAACATGGCAAAAAACAAGAGAATGATTTGGACC
TTTTGAGCGACTTTATTATGCTGCGAAATAAATATAAGACTTGCACCTCAAAGACTGAAGTCACAAACAG
TGATGAAAAACATGATAAAGAAGCATGTTCTTTGACACTTCAAGAAGAAAGTCCTATTGTTCATATTAAT
AAAACCCTGGAGGAAATAAATCAGGAAAGGGGAACAGATAGTGTCATTGAAATTCAAGCGTCAGATAGCC
AGTGCCAAGCATTTTGCCTCCTCGAAGCAGCAGCTTCTCCTATCTTAAAAAACCTTGTATCCTTGTGTAC
CCTCCCTACTGCTAATTGGAAATTTGCCACTGTTATTTTTGACCAAACAAGGTTTCTCTTAAAGGAACAA
GAAAAAGTAGTAAGTGATGCTGTTCGCCAAGGTACAATTGATGAAAGAGAAATGACTTTCAAGCATGCCG
CTCTCTTACATCTTCTGGTAACAATTAGAGATGTCCTTTTAACATGCAGCTTGGACACAGCATTGGGATA
TTTGTCGAAGGCAAAAGATATCTACAACAGCATTTTAGGCCCCTATTTGGGTGACATTTGGAGACAGCTG
GAGATTGTACAGTTTATTAGGGGGAAAAAGCCTGAAACCAACTACAAGATACAAGAATTGCAATGTCAGA
TACTAAGTTGGATGCAAAGTCAACAGCAAATTAAGGTACTGATTATAATAAGAATGGACTCAGACGGTGA
AAAACATTTTCTCATTAAAATTCTTAACAAAATAGAAGGTTTAACACTGACTGTCCTTCATTCAAATGAA
AGAAAAGATTTTCTGGAATCTGAAGGTGTTTTAAGGGGTACAAGTTCCTGTGTAGTTGTACATAATCAAT
ATATTGGAGCAGATTTCCCCTGGAGTAATTTCTCATTTGTGGTGGAATACAATTATGTGGAAGACTCTTG
TTGGACTAAACACTGCAAAGAGTTGAATATTCCTTACATGGCCTTTAAAGTGATTCTTCCAGACACAGTT
TTAGAAAGAAGCACCTTGCTGGATAGATTTGGAGGTTTTCTTTTGGAAATTCAGATTCCATATGTGTTTT
TTGCATCTGAAGGACTTCTTAATACTCCAGACATACTTCAGCTGCTAGAATCCAACTATAACATCTCACT
AGTAGAGAGAGGCTGCAGTGAGTCATTGAAACTCTTTGGAAGTTCAGAGTGTTATGTAGTGGTGACAATT
GATGAACACACTGCCATAATTTTGCAGGATCTAGAAGAATTGAATTATGAGAAGGCATCAGACAATATCA
TTATGAGGCTGATGGCATTATCATTACAGTACAGATATTGTTGGATAATTTTATATACCAAAGAAACATT
AAATTCAGAGTATCTGCTTACAGAAAAGACACTTCATCACCTAGCACTGATTTATGCAGCTTTGGTTTCA
TTTGGGCTAAACTCTGAAGAACTGGATGTAAAGCTTATAATTGCCCCAGGAGTAGAAGCAACTGCCTTGA
TAATTCGACAAATTGCTGACCACAGTTTAATGACCTCAAAGAGAGATCCTCATGAATGGTTGGATAAATC
CTGGCTTAAAGTTTCACCATCTGAGGAAGAAATGTACTTACTTGATTTTCCATGTATTAACCCATTGGTG
GCTCAGCTCATGCTAAATAAAGGACCTTCACTGCATTGGATATTATTAGCAACTCTGTGTCAACTTCAGG
AACTCCTACCTGAAGTCCCAGAAAAAGTGTTAAAGCATTTTTGTAGCATCACTTCCCTATTCAAGATTGG
TTCTTCTTCCATAACAAAATCACCGCAAATTTCGTCACCTCAGGAAAATAGGAATCAGATTAGTACCTTG
TCTTCTCAAAGTTCAGCTTCTGATTTAGACTCTGTCATTCAAGAACATAATGAATATTATCAGTATTTAG
GATTAGGAGAGACAGTGCAGGAAGACAAAACCACCATTTTGAATGACAACTCTTCCATTATGGAACTAAA
AGAAATCTCAAGTTTTTTACCACCTGTGACTTCATACAATCAGACCAGCTACTGGAAAGACTCCAGCTGT
AAATCTAATATAGGGCAGAATACTCCTTTTCTAATTAATATAGAATCAAGGAGACCGGCTTATAACTCCT
TTCTAAACCACAGTGATTCAGAGTCAGATGTCTTTTCTTTGGGTCTAACACAAATGAACTGTGAAACTAT
AAAATCACCAACTGACACTCAGAAGAGAGTGTCAGTTGTCCCCCGTTTTATAAATTCTCAGAAAAGGAGA
ACACATGAAGCAAAAGGTTTCATAAATAAAGATGTATCGGACCCTATCTTTTCACTAGAGGGCACTCAAT
CTCCTCTTCATTGGAACTTTAAGAAAAATATATGGGAACAAGAGAATCACCCGTTCAACTTACAATATGG
TGCACAGCAGACTGCATGTAACAAATTGTACTCTCAGAAAGGTAATTTATTCACTGATCAGCAAAAATGT
CTATCAGATGAGTCTGAAGGCCTCACATGTGAAAGTTCAAAAGATGAGACTTTCTGGAGAGAATTACCAT
CTGTCCCCAGTTTGGATTTATTTCGTGCTTCTGATTCTAATGCAAATCAAAAAGAATTCAACAGCCTTTA
TTTCTACCAAAGAGCTGGAAAAAGTTTAGGACAGAAAAGGCACCATGAATCTTCATTTAACTCAGGAGAC
AAGGAATCATTAACAGGTTTTATGTGCTCACAACTACCACAATTCAAAAAACGACGTCTAGCATATGAAA
AAGTCCCTGGTAGAGTTGATGGGCAGACTCGGCTGAGGTTTTTTTGA

Translation (1508 aa):
MFSALKYHAIDYLYENVVRKKFYRDALLLRIPSCLYQDESYHVAVTDNKFRRPWTRVSAVSVPGMTDTSV
LDQWKASFFVEDFLEKKTITRMVTQINCEFEEVVPSSNPDSQIEVEEVSLYTHMDYNEVFTPVSCLEKCS
ALQNQNQDLFIDDKGILFVSSRKHLPTLPTLLSRLKLFLVKDPLLDFKGQIFTEANFSRECFSLQETLEA
FVKEDFCMDKVNFCQEKLEDTICLNEPSSFLIEYEFLIPPSLKPEIDIPSLSELKELLNPVPEIINYVDE
KEKLFERDLTNKHGIEDIGDIKFSSTEILTIQSQSEPEECSKPGELEMPLTPLFLTCQHSSVNSLRTELQ
TFPLSPVCKINLLTAEESANEYYMMWQLERCRSPLNPFLLTVPRIQEPHSQYSVTDLKKIFSVKEESLVI
NLEKAEWWKQAGLNLKMMETLEHLNTYLCHDNLSSNDTKIEIFLPTKVLQLESCLEHKSHSSPIALIDEK
STNAHLSLPQKSPSLAKEVPDLCFSDDYFSDKGAAKEEKPKNDQEPVNRIIQKKENNDHFELDCTGPSIK
SPSSSIIKKASFEHGKKQENDLDLLSDFIMLRNKYKTCTSKTEVTNSDEKHDKEACSLTLQEESPIVHIN
KTLEEINQERGTDSVIEIQASDSQCQAFCLLEAAASPILKNLVSLCTLPTANWKFATVIFDQTRFLLKEQ
EKVVSDAVRQGTIDEREMTFKHAALLHLLVTIRDVLLTCSLDTALGYLSKAKDIYNSILGPYLGDIWRQL
EIVQFIRGKKPETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEKHFLIKILNKIEGLTLTVLHSNE
RKDFLESEGVLRGTSSCVVVHNQYIGADFPWSNFSFVVEYNYVEDSCWTKHCKELNIPYMAFKVILPDTV
LERSTLLDRFGGFLLEIQIPYVFFASEGLLNTPDILQLLESNYNISLVERGCSESLKLFGSSECYVVVTI
DEHTAIILQDLEELNYEKASDNIIMRLMALSLQYRYCWIILYTKETLNSEYLLTEKTLHHLALIYAALVS
FGLNSEELDVKLIIAPGVEATALIIRQIADHSLMTSKRDPHEWLDKSWLKVSPSEEEMYLLDFPCINPLV
AQLMLNKGPSLHWILLATLCQLQELLPEVPEKVLKHFCSITSLFKIGSSSITKSPQISSPQENRNQISTL
SSQSSASDLDSVIQEHNEYYQYLGLGETVQEDKTTILNDNSSIMELKEISSFLPPVTSYNQTSYWKDSSC
KSNIGQNTPFLINIESRRPAYNSFLNHSDSESDVFSLGLTQMNCETIKSPTDTQKRVSVVPRFINSQKRR
THEAKGFINKDVSDPIFSLEGTQSPLHWNFKKNIWEQENHPFNLQYGAQQTACNKLYSQKGNLFTDQQKC
LSDESEGLTCESSKDETFWRELPSVPSLDLFRASDSNANQKEFNSLYFYQRAGKSLGQKRHHESSFNSGD
KESLTGFMCSQLPQFKKRRLAYEKVPGRVDGQTRLRFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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