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Report for CCDS94484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94484.1 Public Homo sapiens 9 RALGPS1 24 110 108 CCDS HistoryNCBI Gene:9649Re-query CCDS DB by CCDS ID:94484.1Re-query CCDS DB by GeneID:9649See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94484.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394011.7 ENSP00000377579.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394011.7Link to Ensembl Protein Viewer:ENSP00000377579.3Re-query CCDS DB by Nucleotide ID:ENST00000394011Re-query CCDS DB by Protein ID:ENSP00000377579
Original member Current member NCBI NM_001366399.1 NP_001353328.1 Accepted alive Link to Nucleotide Sequence:NM_001366399.1Link to Protein Sequence:NP_001353328.1Re-query CCDS DB by Nucleotide ID:NM_001366399Re-query CCDS DB by Protein ID:NP_001353328Link to BLAST:NP_001353328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353328.1 108 Q5JS13-6 108 100% 0 0

Chromosomal Locations for CCDS 94484.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 126962290 126962346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 126965844 126965951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 126977695 126977745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 126989893 126990003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCTGCCACTCCACAGGGCAGCAGCAGCT
CGGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTATGATGCCGTTGTCTTCGATGTCTT
GAAAGTGACCCCAGAGGAGTTTGCTAGCCAGATTACATTAATGGATATACCTGTGTTTAAAGCTATCCAG
CCGGAGAAAGGCTGGCCTGCCAGAATGGAAGACTCCCTGCAGAAGTCCACAGTTTCCTCCAGGCCACATG
ACACGTTGCAGTTCAGGAAAACACTGCCTGTGGGTCCAGGAACCTGA

Translation (108 aa):
MYKRNGLMASVLVTSATPQGSSSSDSLEGQSCDYASKSYDAVVFDVLKVTPEEFASQITLMDIPVFKAIQ
PEKGWPARMEDSLQKSTVSSRPHDTLQFRKTLPVGPGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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