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Report for CCDS9563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9563.1 Public Homo sapiens 14 SLC39A2 24 110 108 CCDS HistoryNCBI Gene:29986Re-query CCDS DB by CCDS ID:9563.1Re-query CCDS DB by GeneID:29986See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298681.5 ENSP00000298681.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298681.5Link to Ensembl Protein Viewer:ENSP00000298681.4Re-query CCDS DB by Nucleotide ID:ENST00000298681Re-query CCDS DB by Protein ID:ENSP00000298681
Original member Current member NCBI NM_014579.4 NP_055394.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014579.4Link to Protein Sequence:NP_055394.2Re-query CCDS DB by Nucleotide ID:NM_014579Re-query CCDS DB by Protein ID:NP_055394Link to BLAST:NP_055394.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055394.2 309 Q9NP94-1 309 100% 0 0

Chromosomal Locations for CCDS 9563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20999447 20999561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20999742 20999872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21000116 21000166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21000947 21001579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAGCAACTACTAGGAATAAAACTTGGCTGCCTGTTTGCCCTGTTGGCTCTCACTCTGGGCTGTGGCC
TTACTCCCATCTGCTTCAAATGGTTCCAGATTGATGCAGCCAGAGGTCATCACCGGCTAGTCCTCAGACT
CCTGGGCTGTATTTCTGCTGGTGTTTTCCTGGGAGCAGGGTTCATGCATATGACTGCTGAAGCCCTGGAG
GAAATTGAATCACAGATTCAGAAGTTCATGGTGCAGAACAGATCAGCAAGTGAGAGAAATTCTTCTGGTG
ATGCTGATTCAGCTCATATGGAGTATCCCTATGGAGAGCTCATCATCTCCCTGGGCTTCTTTTTTGTCTT
CTTTTTGGAGTCGCTGGCATTGCAGTGCTGTCCTGGGGCTGCTGGAGGATCGACAGTGCAGGACGAAGAA
TGGGGTGGGGCTCATATCTTCGAACTCCACAGCCATGGACATTTACCCTCACCCTCAAAGGGTCCCCTCC
GAGCCCTTGTCCTCTTGCTGTCACTCTCCTTTCACTCAGTGTTTGAAGGGCTAGCTGTGGGGCTGCAGCC
GACAGTAGCAGCTACCGTGCAGCTCTGCCTTGCTGTCCTGGCTCATAAGGGGCTTGTGGTGTTTGGTGTA
GGAATGCGGCTAGTGCATTTAGGTACCAGCTCACGATGGGCAGTGTTCTCCATACTATTATTAGCTCTCA
TGTCCCCCCTGGGCCTAGCCGTAGGGCTGGCTGTGACTGGAGGGGACTCTGAAGGAGGGCGGGGCTTAGC
CCAGGCTGTGTTAGAGGGTGTGGCAGCTGGTACCTTCCTGTATGTCACCTTCCTAGAAATTCTTCCACGG
GAGCTAGCTAGTCCTGAGGCCCCTCTAGCTAAGTGGAGCTGTGTAGCCGCTGGTTTTGCCTTCATGGCCT
TTATTGCCTTGTGGGCCTGA

Translation (309 aa):
MEQLLGIKLGCLFALLALTLGCGLTPICFKWFQIDAARGHHRLVLRLLGCISAGVFLGAGFMHMTAEALE
EIESQIQKFMVQNRSASERNSSGDADSAHMEYPYGELIISLGFFFVFFLESLALQCCPGAAGGSTVQDEE
WGGAHIFELHSHGHLPSPSKGPLRALVLLLSLSFHSVFEGLAVGLQPTVAATVQLCLAVLAHKGLVVFGV
GMRLVHLGTSSRWAVFSILLLALMSPLGLAVGLAVTGGDSEGGRGLAQAVLEGVAAGTFLYVTFLEILPR
ELASPEAPLAKWSCVAAGFAFMAFIALWA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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