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Report for CCDS9620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9620.1 Public Homo sapiens 14 MDP1 24 110 108 CCDS HistoryNCBI Gene:145553Re-query CCDS DB by CCDS ID:9620.1Re-query CCDS DB by GeneID:145553See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288087.12 ENSP00000288087.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288087.12Link to Ensembl Protein Viewer:ENSP00000288087.7Re-query CCDS DB by Nucleotide ID:ENST00000288087Re-query CCDS DB by Protein ID:ENSP00000288087
Original member Current member NCBI NM_138476.4 NP_612485.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138476.4Link to Protein Sequence:NP_612485.2Re-query CCDS DB by Nucleotide ID:NM_138476Re-query CCDS DB by Protein ID:NP_612485Link to BLAST:NP_612485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612485.2 176 Q86V88-1 176 100% 0 0

Chromosomal Locations for CCDS 9620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24214024 24214151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24214310 24214395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24214492 24214599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24215552 24215662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24215737 24215797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24215919 24215955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCGCGGCTACCGAAGCTGGCAGTCTTTGATTTGGATTACACTCTCTGGCCTTTCTGGGTCGACACGC
ACGTAGACCCTCCGTTCCATAAGAGCAGTGATGGAACTGTACGAGATAGGCGGGGCCAAGACGTCCGACT
GTACCCAGAGGTGCCTGAGGTCCTAAAACGATTGCAGAGCCTTGGGGTGCCCGGTGCGGCTGCTTCAAGG
ACAAGTGAGATAGAAGGGGCCAACCAGCTACTGGAGCTCTTTGACCTCTTCAGGTACTTTGTTCATCGGG
AAATCTATCCAGGCAGCAAGATCACACACTTTGAGAGGTTGCAGCAGAAGACTGGAATTCCTTTCTCCCA
GATGATCTTCTTTGATGATGAGAGGCGGAATATTGTAGACGTCAGCAAACTGGGTGTTACCTGCATTCAC
ATCCAGAATGGAATGAATCTTCAAACTCTAAGTCAAGGGTTAGAGACATTTGCGAAGGCCCAAACTGGGC
CTTTGAGGTCCAGCCTTGAGGAGAGCCCATTTGAGGCCTAA

Translation (176 aa):
MARLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASR
TSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIH
IQNGMNLQTLSQGLETFAKAQTGPLRSSLEESPFEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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