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Report for CCDS976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
976.1 Public Homo sapiens 1 MINDY1 24 110 108 CCDS HistoryNCBI Gene:55793Re-query CCDS DB by CCDS ID:976.1Re-query CCDS DB by GeneID:55793See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361738.12 ENSP00000354669.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361738.12Link to Ensembl Protein Viewer:ENSP00000354669.7Re-query CCDS DB by Nucleotide ID:ENST00000361738Re-query CCDS DB by Protein ID:ENSP00000354669
Original member Current member EBI ENST00000361936.9 ENSP00000354814.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361936.9Link to Ensembl Protein Viewer:ENSP00000354814.5Re-query CCDS DB by Nucleotide ID:ENST00000361936Re-query CCDS DB by Protein ID:ENSP00000354814
Original member Current member EBI ENST00000683666.2 ENSP00000507359.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683666.2Link to Ensembl Protein Viewer:ENSP00000507359.1Re-query CCDS DB by Nucleotide ID:ENST00000683666Re-query CCDS DB by Protein ID:ENSP00000507359
Original member Current member NCBI NM_001163258.3 NP_001156730.3 Accepted alive Link to Nucleotide Sequence:NM_001163258.3Link to Protein Sequence:NP_001156730.3Re-query CCDS DB by Nucleotide ID:NM_001163258Re-query CCDS DB by Protein ID:NP_001156730Link to BLAST:NP_001156730.3
Original member Current member NCBI NM_001319998.2 NP_001306927.2 Accepted alive Link to Nucleotide Sequence:NM_001319998.2Link to Protein Sequence:NP_001306927.2Re-query CCDS DB by Nucleotide ID:NM_001319998Re-query CCDS DB by Protein ID:NP_001306927Link to BLAST:NP_001306927.2
Original member Current member NCBI NM_001376665.1 NP_001363594.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376665.1Link to Protein Sequence:NP_001363594.1Re-query CCDS DB by Nucleotide ID:NM_001376665Re-query CCDS DB by Protein ID:NP_001363594Link to BLAST:NP_001363594.1
Original member Current member NCBI NM_018379.5 NP_060849.3 Accepted alive Link to Nucleotide Sequence:NM_018379.5Link to Protein Sequence:NP_060849.3Re-query CCDS DB by Nucleotide ID:NM_018379Re-query CCDS DB by Protein ID:NP_060849Link to BLAST:NP_060849.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156730.3 469 Q8N5J2-1 469 100% 0 0
NP_001306927.2 469 Q8N5J2-1 469 100% 0 0
NP_001363594.1 469 Q8N5J2-1 469 100% 0 0
NP_060849.3 469 Q8N5J2-1 469 100% 0 0

Chromosomal Locations for CCDS 976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150997287 150997367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150997624 150997779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150998082 150998273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150999369 150999511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150999862 150999964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151000457 151000615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151001250 151001314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151001725 151001782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151002165 151002617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGAATACCATCAGCCTGAGGATCCAGCCCCTGGTAAGGCCGGGACTGCAGAAGCAGTCATCCCTGAAA
ACCATGAGGTTCTGGCAGGCCCAGATGAGCACCCTCAGGACACAGATGCAAGAGATGCTGATGGGGAGGC
TAGAGAACGGGAGCCAGCAGACCAAGCTTTGCTGCCTAGCCAGTGTGGGGACAACCTTGAGTCCCCTCTG
CCTGAAGCTAGCTCAGCTCCACCGGGGCCAACCCTTGGGACACTGCCTGAAGTAGAGACAATAAGGGCAT
GCTCCATGCCCCAGGAGCTTCCTCAGTCCCCCAGGACCCGACAGCCTGAGCCAGATTTCTACTGTGTCAA
GTGGATCCCTTGGAAAGGAGAACAGACACCCATCATCACCCAGAGCACTAACGGCCCTTGCCCTCTCCTT
GCCATCATGAACATCCTCTTTCTTCAGTGGAAGGTGAAGCTCCCCCCGCAGAAGGAAGTGATCACATCGG
ATGAGCTCATGGCCCATCTTGGAAACTGCCTCCTGTCCATCAAGCCCCAGGAGAAGTCAGAGGGACTTCA
GCTTAATTTTCAGCAGAATGTGGATGATGCAATGACAGTGCTGCCTAAACTGGCCACAGGTCTGGATGTC
AATGTGCGATTCACAGGCGTCTCTGATTTTGAGTATACACCCGAGTGCAGTGTCTTTGACCTGCTAGGCA
TACCTCTGTACCATGGCTGGCTTGTTGATCCACAGAGTCCTGAGGCTGTGCGTGCAGTTGGGAAACTGAG
TTACAACCAGCTGGTGGAGAGGATCATCACCTGCAAACACTCCAGTGACACCAACCTCGTGACAGAAGGC
CTGATTGCAGAGCAGTTCCTGGAGACCACCGCGGCCCAGCTGACCTACCACGGACTGTGTGAGCTGACAG
CAGCTGCTAAGGAGGGTGAACTTAGCGTCTTTTTCCGAAACAACCACTTTAGCACCATGACTAAGCATAA
GAGTCACTTATACCTACTGGTCACTGACCAGGGCTTTCTACAGGAGGAGCAAGTCGTATGGGAGAGCCTG
CACAATGTGGATGGAGACAGCTGCTTTTGTGACTCTGACTTTCACCTGAGTCATTCCCTGGGCAAGGGGC
CTGGAGCAGAAGGTGGGAGTGGCTCCCCAGAAACGCAGCTGCAGGTAGACCAGGACTACCTGATTGCTCT
GTCCCTGCAGCAGCAACAGCCACGAGGCCCGCTGGGGCTTACCGACTTGGAGCTGGCCCAGCAGCTTCAG
CAAGAGGAGTATCAACAGCAGCAGGCAGCGCAGCCAGTGCGGATGCGGACGCGGGTCCTGTCACTGCAGG
GGAGAGGAGCCACATCTGGACGCCCAGCCGGGGAGCGTCGGCAGAGGCCGAAGCACGAGTCAGACTGCAT
TCTGCTGTAG

Translation (469 aa):
MEYHQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPL
PEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLL
AIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDV
NVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEG
LIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESL
HNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPETQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQ
QEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGERRQRPKHESDCILL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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