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Report for CCDS9818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9818.1 Public Homo sapiens 14 PNMA1 24 110 108 CCDS HistoryNCBI Gene:9240Re-query CCDS DB by CCDS ID:9818.1Re-query CCDS DB by GeneID:9240See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9818.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316836.5 ENSP00000318914.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316836.5Link to Ensembl Protein Viewer:ENSP00000318914.3Re-query CCDS DB by Nucleotide ID:ENST00000316836Re-query CCDS DB by Protein ID:ENSP00000318914
Original member Current member NCBI NM_006029.5 NP_006020.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006029.5Link to Protein Sequence:NP_006020.4Re-query CCDS DB by Nucleotide ID:NM_006029Re-query CCDS DB by Protein ID:NP_006020Link to BLAST:NP_006020.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006020.4 353 Q8ND90 353 100% 0 0

Chromosomal Locations for CCDS 9818.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 73712578 73713639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGCGATGACACTGTTGGAAGACTGGTGCCGGGGGATGGATGTGAACTCCCAGAGAGCTCTGTTAGTCT
GGGGCATCCCAGTGAACTGTGATGAGGCTGAAATCGAAGAGACCCTCCAGGCTGCGATGCCCCAGGTCTC
CTACCGAATGCTTGGGAGAATGTTCTGGAGGGAAGAAAATGCGAAAGCAGCCTTATTAGAGCTCACTGGC
GCTGTAGATTACGCCGCGATCCCCAGGGAGATGCCGGGCAAAGGAGGGGTCTGGAAAGTGTTATTTAAGC
CCCCAACTTCTGATGCTGAATTTTTAGAAAGATTGCACCTCTTCCTAGCTAGAGAGGGGTGGACCGTGCA
AGATGTTGCCCGTGTCCTTGGGTTTCAGAACCCTACTCCGACCCCGGGCCCAGAGATGCCAGCAGAGATG
CTAAACTATATTTTGGATAATGTTATTCAGCCTCTTGTTGAGTCCATATGGTACAAGAGGCTGACACTTT
TCTCGGGGAGGGACATCCCAGGGCCTGGAGAGGAAACCTTTGATCCCTGGCTGGAGCACACTAATGAGGT
CCTAGAGGAGTGGCAGGTGTCCGATGTAGAAAAGAGGCGGCGGTTGATGGAGAGTCTTAGAGGCCCCGCC
GCTGATGTTATTCGCATCCTTAAGTCCAACAACCCCGCGATAACCACTGCCGAATGCCTGAAGGCGCTTG
AGCAGGTGTTTGGGAGCGTTGAGAGCTCTAGGGATGCCCAGATCAAATTTCTGAACACTTATCAGAACCC
GGGAGAAAAATTGTCTGCTTATGTCATTCGTCTGGAGCCTCTGCTACAGAAGGTGGTAGAGAAGGGGGCC
ATTGATAAAGATAATGTGAACCAGGCCCGCCTAGAGCAGGTCATTGCCGGGGCCAACCACAGCGGGGCCA
TCCGAAGGCAGCTGTGGCTTACCGGGGCTGGGGAAGGGCCAGCCCCAAACCTCTTTCAGTTGCTGGTGCA
GATCCGTGAGGAGGAAGCCAAGGAGGAGGAGGAGGAGGCTGAGGCCACCCTTCTGCAGTTAGGCCTGGAA
GGGCACTTCTGA

Translation (353 aa):
MAMTLLEDWCRGMDVNSQRALLVWGIPVNCDEAEIEETLQAAMPQVSYRMLGRMFWREENAKAALLELTG
AVDYAAIPREMPGKGGVWKVLFKPPTSDAEFLERLHLFLAREGWTVQDVARVLGFQNPTPTPGPEMPAEM
LNYILDNVIQPLVESIWYKRLTLFSGRDIPGPGEETFDPWLEHTNEVLEEWQVSDVEKRRRLMESLRGPA
ADVIRILKSNNPAITTAECLKALEQVFGSVESSRDAQIKFLNTYQNPGEKLSAYVIRLEPLLQKVVEKGA
IDKDNVNQARLEQVIAGANHSGAIRRQLWLTGAGEGPAPNLFQLLVQIREEEAKEEEEEAEATLLQLGLE
GHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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