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Report for CCDS9866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9866.1 Public Homo sapiens 14 SLIRP 24 110 108 CCDS HistoryNCBI Gene:81892Re-query CCDS DB by CCDS ID:9866.1Re-query CCDS DB by GeneID:81892See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000557342.6 ENSP00000450909.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000557342.6Link to Ensembl Protein Viewer:ENSP00000450909.1Re-query CCDS DB by Nucleotide ID:ENST00000557342Re-query CCDS DB by Protein ID:ENSP00000450909
Original member Current member NCBI NM_031210.6 NP_112487.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031210.6Link to Protein Sequence:NP_112487.1Re-query CCDS DB by Nucleotide ID:NM_031210Re-query CCDS DB by Protein ID:NP_112487Link to BLAST:NP_112487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112487.1 109 Q9GZT3-1 109 100% 0 0

Chromosomal Locations for CCDS 9866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77708112 77708208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77710838 77710896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77715772 77715879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77717496 77717561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGCGGCCTCAGCAGCGAGAGGTGCTGCGGCGCTGCGTAGAAGTATCAATCAGCCGGTTGCTTTTGTGA
GAAGAATTCCTTGGACTGCGGCGTCGAGTCAGCTGAAAGAACACTTTGCACAGTTCGGCCATGTCAGAAG
GTGCATTTTACCTTTTGACAAGGAGACTGGCTTTCACAGAGGTTTGGGTTGGGTTCAGTTTTCTTCAGAA
GAAGGACTTCGGAATGCACTACAACAGGAAAATCATATTATAGATGGAGTAAAGGTCCAGGTTCACACTA
GAAGGCCAAAACTTCCGCAAACATCTGATGATGAAAAGAAAGATTTTTGA

Translation (109 aa):
MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSE
EGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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