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Report for CCDS9962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9962.1 Public Homo sapiens 14 BEGAIN 24 110 108 CCDS HistoryNCBI Gene:57596Re-query CCDS DB by CCDS ID:9962.1Re-query CCDS DB by GeneID:57596See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9962.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355173.7 ENSP00000347301.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355173.7Link to Ensembl Protein Viewer:ENSP00000347301.2Re-query CCDS DB by Nucleotide ID:ENST00000355173Re-query CCDS DB by Protein ID:ENSP00000347301
Original member Current member EBI ENST00000557378.6 ENSP00000450722.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557378.6Link to Ensembl Protein Viewer:ENSP00000450722.2Re-query CCDS DB by Nucleotide ID:ENST00000557378Re-query CCDS DB by Protein ID:ENSP00000450722
Original member Current member EBI ENST00000553553.6 ENSP00000451397.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553553.6Link to Ensembl Protein Viewer:ENSP00000451397.2Re-query CCDS DB by Nucleotide ID:ENST00000553553Re-query CCDS DB by Protein ID:ENSP00000451397
Original member Current member EBI ENST00000556188.6 ENSP00000452157.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556188.6Link to Ensembl Protein Viewer:ENSP00000452157.2Re-query CCDS DB by Nucleotide ID:ENST00000556188Re-query CCDS DB by Protein ID:ENSP00000452157
Original member Current member NCBI NM_001159531.2 NP_001153003.1 Accepted alive Link to Nucleotide Sequence:NM_001159531.2Link to Protein Sequence:NP_001153003.1Re-query CCDS DB by Nucleotide ID:NM_001159531Re-query CCDS DB by Protein ID:NP_001153003Link to BLAST:NP_001153003.1
Original member Current member NCBI NM_001385082.1 NP_001372011.1 Accepted alive Link to Nucleotide Sequence:NM_001385082.1Link to Protein Sequence:NP_001372011.1Re-query CCDS DB by Nucleotide ID:NM_001385082Re-query CCDS DB by Protein ID:NP_001372011Link to BLAST:NP_001372011.1
Original member Current member NCBI NM_001385083.1 NP_001372012.1 Accepted alive Link to Nucleotide Sequence:NM_001385083.1Link to Protein Sequence:NP_001372012.1Re-query CCDS DB by Nucleotide ID:NM_001385083Re-query CCDS DB by Protein ID:NP_001372012Link to BLAST:NP_001372012.1
Original member Current member NCBI NM_001385084.1 NP_001372013.1 Accepted alive Link to Nucleotide Sequence:NM_001385084.1Link to Protein Sequence:NP_001372013.1Re-query CCDS DB by Nucleotide ID:NM_001385084Re-query CCDS DB by Protein ID:NP_001372013Link to BLAST:NP_001372013.1
Original member Current member NCBI NM_020836.4 NP_065887.1 Accepted alive Link to Nucleotide Sequence:NM_020836.4Link to Protein Sequence:NP_065887.1Re-query CCDS DB by Nucleotide ID:NM_020836Re-query CCDS DB by Protein ID:NP_065887Link to BLAST:NP_065887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153003.1 593 Q9BUH8 593 100% 0 0
NP_001372011.1 593 Q9BUH8 593 100% 0 0
NP_001372012.1 593 Q9BUH8 593 100% 0 0
NP_001372013.1 593 Q9BUH8 593 100% 0 0
NP_065887.1 593 Q9BUH8 593 100% 0 0

Chromosomal Locations for CCDS 9962.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 100537969 100539315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100540496 100540579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100543858 100543965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100545000 100545066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100546501 100546662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 100567911 100567924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGAGAAACTCAGCGCGCTGCAGGAGCAGAAGGGCGAGCTGCGCAAGCGGCTGTCCTACACCACACACA
AGCTCGAGAAGCTCGAGACCGAGTTCGACTCCACGCGCCACTACCTGGAGATCGAGCTGCGGCGCGCGCA
GGAGGAACTGGAGAAGGTCACGGAGAAGCTGCGCAGGATTCAGAGCAACTACATGGCACTGCAGAGGATC
AACCAGGAGCTGGAGGACAAGCTGTACCGCATGGGCCAGCACTATGAGGAGGAGAAGCGTGCGCTGAGCC
ACGAGATTGTTGCCCTCAACAGCCATCTGCTAGAAGCCAAGGTGACCATCGACAAGCTGTCAGAGGACAA
CGAGCTCTATAGGAAGGACTGCAATCTAGCGGCCCAGCTGCTGCAGTGCAGCCAGACCTACGGCAGGGTC
CACAAGGTGTCTGAGCTGCCCTCGGATTTCCAGGAGCGCGTGAGCCTGCACATGGAGAAGCACGGCTGCA
GCCTGCCATCCCCGCTCTGCCACCCGGCCTACGCCGACAGCGTCCCCACCTGCGTCATTGCCAAGGTGCT
GGAGAAGCCGGACCCCGCCAGCCTGTCCTCCCGCCTGTCCGATGCCTCCGCCCGCGACCTGGCCTTCTGC
GACGGGGTGGAGAAACCAGGCCCGCGGCCCCCCTACAAGGGAGACATCTACTGCAGTGACACAGCCCTCT
ACTGCCCGGAGGAGCGGCGGCGAGACCGGCGGCCTAGCGTGGACGCGCCCGTGACCGACGTGGGCTTCCT
GCGGGCCCAGAACTCCACTGACAGCGCGGCCGAGGAGGAGGAGGAGGCCGAGGCGGCGGCCTTCCCGGCG
GGCTTCCAGCATGAGGCCTTCCCCAGCTACGCAGGCTCACTGCCCACGTCCAGCTCCTACTCCAGCTTCA
GCGCCACGTCGGAGGAGAAGGAGCACGCGCAGGCCAGCACGCTGACCGCGTCGCAGCAGGCCATCTACCT
GAACAGCCGCGACGAGCTCTTCGACCGCAAGCCACCCGCCACCACCTACGAGGGCAGCCCTCGCTTTGCC
AAGGCCACGGCCGCGGTGGCGGCCCCGCTGGAGGCCGAAGTGGCCCCAGGCTTCGGGCGGACCATGTCAC
CGTACCCGGCCGAGACCTTCCGCTTCCCGGCCTCTCCGGGTCCCCAGCAGGCCCTGATGCCCCCAAACCT
GTGGAGCCTGCGGGCCAAGCCGGGGACCGCCCGGCTCCCCGGGGAGGACATGAGGGGCCAGTGGCGTCCC
CTGAGCGTGGAGGACATCGGCGCCTACTCCTACCCCGTGAGCGCTGCCGGCCGCGCCTCACCCTGCAGCT
TCTCTGAACGCTACTACGGCGGGGCCGGGGGCAGCCCGGGCAAGAAGGCCGACGGCCGCGCCAGCCCGCT
CTACGCCAGCTACAAGGCCGACAGCTTCTCCGAGGGGGACGACCTCTCCCAGGGCCACCTGGCAGAGCCC
TGCTTCCTGCGGGCGGGCGGCGACCTGAGCCTCAGTCCCGGCCGCTCGGCTGACCCACTGCCCGGCTATG
CACCCAGCGAGGGGGGGGACGGGGACAGGCTCGGGGTGCAGCTGTGTGGGACCGCCAGCAGCCCTGAGCC
CGAGCAGGGTTCCAGGGACTCCTTGGAGCCGAGCTCCATGGAGGCCTCCCCGGAAATGCATCCTGCCGCC
CGCCTCAGCCCCCAGCAGGCCTTTCCGCGGACTGGTGGCTCGGGGCTGAGCCGCAAGGACAGCCTCACCA
AGGCCCAGCTCTACGGAACCTTGCTCAACTGA

Translation (593 aa):
MEKLSALQEQKGELRKRLSYTTHKLEKLETEFDSTRHYLEIELRRAQEELEKVTEKLRRIQSNYMALQRI
NQELEDKLYRMGQHYEEEKRALSHEIVALNSHLLEAKVTIDKLSEDNELYRKDCNLAAQLLQCSQTYGRV
HKVSELPSDFQERVSLHMEKHGCSLPSPLCHPAYADSVPTCVIAKVLEKPDPASLSSRLSDASARDLAFC
DGVEKPGPRPPYKGDIYCSDTALYCPEERRRDRRPSVDAPVTDVGFLRAQNSTDSAAEEEEEAEAAAFPA
GFQHEAFPSYAGSLPTSSSYSSFSATSEEKEHAQASTLTASQQAIYLNSRDELFDRKPPATTYEGSPRFA
KATAAVAAPLEAEVAPGFGRTMSPYPAETFRFPASPGPQQALMPPNLWSLRAKPGTARLPGEDMRGQWRP
LSVEDIGAYSYPVSAAGRASPCSFSERYYGGAGGSPGKKADGRASPLYASYKADSFSEGDDLSQGHLAEP
CFLRAGGDLSLSPGRSADPLPGYAPSEGGDGDRLGVQLCGTASSPEPEQGSRDSLEPSSMEASPEMHPAA
RLSPQQAFPRTGGSGLSRKDSLTKAQLYGTLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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