Chain A, ATP(GTP)binding protein
Protein Classification
PRK13768 family protein( domain architecture ID 10014406)
PRK13768 family protein
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||
| PRK13768 | PRK13768 | GTPase; Provisional |
15-262 | 2.81e-128 | |||||
GTPase; Provisional : Pssm-ID: 237498 [Multi-domain] Cd Length: 253 Bit Score: 363.81 E-value: 2.81e-128
|
|||||||||
| Name | Accession | Description | Interval | E-value | |||||
| PRK13768 | PRK13768 | GTPase; Provisional |
15-262 | 2.81e-128 | |||||
GTPase; Provisional Pssm-ID: 237498 [Multi-domain] Cd Length: 253 Bit Score: 363.81 E-value: 2.81e-128
|
|||||||||
| GPN1 | cd17870 | GPN-loop GTPase 1; GPN-loop GTPase 1 (GPN1, also kown as MBD2-interacting protein or MBDin, ... |
15-253 | 5.90e-103 | |||||
GPN-loop GTPase 1; GPN-loop GTPase 1 (GPN1, also kown as MBD2-interacting protein or MBDin, RNAPII-associated protein 4, and XPA-binding protein 1) is a GTPase is required for nuclear targeting of RNA polymerase II. It forms heterodimers with GPN3. Pssm-ID: 349779 [Multi-domain] Cd Length: 241 Bit Score: 299.10 E-value: 5.90e-103
|
|||||||||
| ATP_bind_1 | pfam03029 | Conserved hypothetical ATP binding protein; Members of this family are found in a range of ... |
19-257 | 3.66e-72 | |||||
Conserved hypothetical ATP binding protein; Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity. Pssm-ID: 397252 [Multi-domain] Cd Length: 238 Bit Score: 220.71 E-value: 3.66e-72
|
|||||||||
| Gem1 | COG1100 | GTPase SAR1 family domain [General function prediction only]; |
12-262 | 1.62e-23 | |||||
GTPase SAR1 family domain [General function prediction only]; Pssm-ID: 440717 [Multi-domain] Cd Length: 177 Bit Score: 93.51 E-value: 1.62e-23
|
|||||||||
| SRP54 | smart00962 | SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
16-118 | 6.85e-05 | |||||
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins. Pssm-ID: 214940 Cd Length: 197 Bit Score: 42.78 E-value: 6.85e-05
|
|||||||||
| Name | Accession | Description | Interval | E-value | |||||
| PRK13768 | PRK13768 | GTPase; Provisional |
15-262 | 2.81e-128 | |||||
GTPase; Provisional Pssm-ID: 237498 [Multi-domain] Cd Length: 253 Bit Score: 363.81 E-value: 2.81e-128
|
|||||||||
| GPN1 | cd17870 | GPN-loop GTPase 1; GPN-loop GTPase 1 (GPN1, also kown as MBD2-interacting protein or MBDin, ... |
15-253 | 5.90e-103 | |||||
GPN-loop GTPase 1; GPN-loop GTPase 1 (GPN1, also kown as MBD2-interacting protein or MBDin, RNAPII-associated protein 4, and XPA-binding protein 1) is a GTPase is required for nuclear targeting of RNA polymerase II. It forms heterodimers with GPN3. Pssm-ID: 349779 [Multi-domain] Cd Length: 241 Bit Score: 299.10 E-value: 5.90e-103
|
|||||||||
| ATP_bind_1 | pfam03029 | Conserved hypothetical ATP binding protein; Members of this family are found in a range of ... |
19-257 | 3.66e-72 | |||||
Conserved hypothetical ATP binding protein; Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity. Pssm-ID: 397252 [Multi-domain] Cd Length: 238 Bit Score: 220.71 E-value: 3.66e-72
|
|||||||||
| GPN | cd17868 | GPN-loop GTPase; GPN-loop GTPases are deeply evolutionarily conserved family of three small ... |
16-185 | 9.70e-32 | |||||
GPN-loop GTPase; GPN-loop GTPases are deeply evolutionarily conserved family of three small GTPases, Gpn1, 2, and 3. They form heterodimers, interact with RNA polymerase II and may function in nuclear import of RNA polymerase II. Pssm-ID: 349777 [Multi-domain] Cd Length: 198 Bit Score: 115.88 E-value: 9.70e-32
|
|||||||||
| GPN2 | cd17871 | GPN-loop GTPase 2; GPN-loop GTPase 2 (GPN2) is a small GTPase required for proper localization ... |
18-185 | 4.34e-24 | |||||
GPN-loop GTPase 2; GPN-loop GTPase 2 (GPN2) is a small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). It forms heterodimers with GPN1 or GPN3. Pssm-ID: 349780 Cd Length: 196 Bit Score: 95.68 E-value: 4.34e-24
|
|||||||||
| GPN3 | cd17872 | GPN-loop GTPase 3; GPN-loop GTPase 3 (GPN3) is a small GTPase that is required for nuclear ... |
20-185 | 9.38e-24 | |||||
GPN-loop GTPase 3; GPN-loop GTPase 3 (GPN3) is a small GTPase that is required for nuclear targeting of RNA polymerase II. It forms heterodimers with GPN1. Pssm-ID: 349781 [Multi-domain] Cd Length: 196 Bit Score: 94.90 E-value: 9.38e-24
|
|||||||||
| Gem1 | COG1100 | GTPase SAR1 family domain [General function prediction only]; |
12-262 | 1.62e-23 | |||||
GTPase SAR1 family domain [General function prediction only]; Pssm-ID: 440717 [Multi-domain] Cd Length: 177 Bit Score: 93.51 E-value: 1.62e-23
|
|||||||||
| SIMIBI | cd01983 | SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
15-180 | 3.42e-15 | |||||
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 69.38 E-value: 3.42e-15
|
|||||||||
| CbiA | pfam01656 | CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
16-124 | 2.92e-05 | |||||
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 43.87 E-value: 2.92e-05
|
|||||||||
| SRP54 | pfam00448 | SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
16-122 | 6.81e-05 | |||||
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins. Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 42.53 E-value: 6.81e-05
|
|||||||||
| SRP54 | smart00962 | SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
16-118 | 6.85e-05 | |||||
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins. Pssm-ID: 214940 Cd Length: 197 Bit Score: 42.78 E-value: 6.85e-05
|
|||||||||
| ParA | COG1192 | ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
24-118 | 1.93e-04 | |||||
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility]; Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 41.77 E-value: 1.93e-04
|
|||||||||
| FlhF | COG1419 | Flagellar biosynthesis GTPase FlhF [Cell motility]; |
16-118 | 3.38e-04 | |||||
Flagellar biosynthesis GTPase FlhF [Cell motility]; Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 41.39 E-value: 3.38e-04
|
|||||||||
| cobW | pfam02492 | CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase ... |
16-207 | 4.78e-04 | |||||
CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans. Pssm-ID: 396860 Cd Length: 179 Bit Score: 39.93 E-value: 4.78e-04
|
|||||||||
| FlhF | cd17873 | signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
16-130 | 4.88e-04 | |||||
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 39.84 E-value: 4.88e-04
|
|||||||||
| SRP54_G | cd17875 | GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
16-51 | 5.74e-04 | |||||
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. Pssm-ID: 349784 Cd Length: 193 Bit Score: 39.87 E-value: 5.74e-04
|
|||||||||
| AAA_28 | pfam13521 | AAA domain; |
17-149 | 1.11e-03 | |||||
AAA domain; Pssm-ID: 433278 [Multi-domain] Cd Length: 164 Bit Score: 38.78 E-value: 1.11e-03
|
|||||||||
| PRK14974 | PRK14974 | signal recognition particle-docking protein FtsY; |
16-122 | 1.23e-03 | |||||
signal recognition particle-docking protein FtsY; Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 39.57 E-value: 1.23e-03
|
|||||||||
| CooC | COG3640 | CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, ... |
15-147 | 2.12e-03 | |||||
CO dehydrogenase nickel-insertion accessory protein CooC1 [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 442857 [Multi-domain] Cd Length: 249 Bit Score: 38.61 E-value: 2.12e-03
|
|||||||||
| minD | CHL00175 | septum-site determining protein; Validated |
11-122 | 4.62e-03 | |||||
septum-site determining protein; Validated Pssm-ID: 214385 [Multi-domain] Cd Length: 281 Bit Score: 37.83 E-value: 4.62e-03
|
|||||||||
| CLP1_P | pfam16575 | mRNA cleavage and polyadenylation factor CLP1 P-loop; CLP1_P is the P-loop carrying domain of ... |
21-118 | 4.70e-03 | |||||
mRNA cleavage and polyadenylation factor CLP1 P-loop; CLP1_P is the P-loop carrying domain of Clp1 mRNA cleavage and polyadenylation factor, Clp1, proteins in eukaryotes. Clp1 is essential for 3'-end processing of mRNAs. This region carries the P-loop suggesting it is the region that binds adenine or guanine nucleotide. Pssm-ID: 406878 Cd Length: 187 Bit Score: 37.23 E-value: 4.70e-03
|
|||||||||
| SRP_G_like | cd03115 | GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
16-51 | 7.13e-03 | |||||
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 36.58 E-value: 7.13e-03
|
|||||||||
| AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
16-120 | 7.19e-03 | |||||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.20 E-value: 7.19e-03
|
|||||||||
| Fap7 | COG1936 | Broad-specificity NMP kinase [Nucleotide transport and metabolism]; |
15-152 | 7.84e-03 | |||||
Broad-specificity NMP kinase [Nucleotide transport and metabolism]; Pssm-ID: 441539 [Multi-domain] Cd Length: 173 Bit Score: 36.33 E-value: 7.84e-03
|
|||||||||
| flhF | PRK05703 | flagellar biosynthesis protein FlhF; |
16-118 | 7.91e-03 | |||||
flagellar biosynthesis protein FlhF; Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 37.18 E-value: 7.91e-03
|
|||||||||
| CooC1 | cd02034 | accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in ... |
15-123 | 9.66e-03 | |||||
accessory protein CooC1; The accessory protein CooC1, a nickel-binding ATPase, participates in the incorporation of nickel into the complex active site ([Ni-4Fe-4S]) cluster of Ni,Fe-dependent carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. Pssm-ID: 349754 [Multi-domain] Cd Length: 249 Bit Score: 36.52 E-value: 9.66e-03
|
|||||||||
| Blast search parameters | ||||
|
