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Conserved domains on  [gi|42795417|gb|AAS46035|]
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kinesin, partial [Naegleria gruberi]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
35-362 2.95e-153

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 437.11  E-value: 2.95e-153
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  35 VVKVYIRKRPTFEREVNAGEYDVVTCRPH-EIIVH--DCRMHPSMKPSlayVESFKFPYpnteVFGERSTTEELYRSAVK 111
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKlTLIVHepKLKVDLTKYIE---NHTFRFDY----VFDESSSNETVYRSTVK 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 112 PLIQFVAAGNVGTMFCFGQTGSGKTYTIT----------GLVKMLSQELFSLIAKLP--GTYSVTATCIELIGENCFDLL 179
Cdd:cd01367  74 PLVPHIFEGGKATCFAYGQTGSGKTYTMGgdfsgqeeskGIYALAARDVFRLLNKLPykDNLGVTVSFFEIYGGKVFDLL 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 180 SEHQEVQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQFARLTLC 259
Cdd:cd01367 154 NRKKRVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTNKLHGKLSFV 233
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 260 DLAGSERNNDSNEHDAERLKETAQINSSLMALKEVIRCVALNkegdKVHVPYRGSKLTRLLKDCFDLEekkkRPHTVVIA 339
Cdd:cd01367 234 DLAGSERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN----KAHIPFRGSKLTQVLKDSFIGE----NSKTCMIA 305
                       330       340
                ....*....|....*....|...
gi 42795417 340 TVSPLSCDSEHTMGTLKHTCIMM 362
Cdd:cd01367 306 TISPGASSCEHTLNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
35-362 2.95e-153

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 437.11  E-value: 2.95e-153
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  35 VVKVYIRKRPTFEREVNAGEYDVVTCRPH-EIIVH--DCRMHPSMKPSlayVESFKFPYpnteVFGERSTTEELYRSAVK 111
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKlTLIVHepKLKVDLTKYIE---NHTFRFDY----VFDESSSNETVYRSTVK 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 112 PLIQFVAAGNVGTMFCFGQTGSGKTYTIT----------GLVKMLSQELFSLIAKLP--GTYSVTATCIELIGENCFDLL 179
Cdd:cd01367  74 PLVPHIFEGGKATCFAYGQTGSGKTYTMGgdfsgqeeskGIYALAARDVFRLLNKLPykDNLGVTVSFFEIYGGKVFDLL 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 180 SEHQEVQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQFARLTLC 259
Cdd:cd01367 154 NRKKRVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTNKLHGKLSFV 233
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 260 DLAGSERNNDSNEHDAERLKETAQINSSLMALKEVIRCVALNkegdKVHVPYRGSKLTRLLKDCFDLEekkkRPHTVVIA 339
Cdd:cd01367 234 DLAGSERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN----KAHIPFRGSKLTQVLKDSFIGE----NSKTCMIA 305
                       330       340
                ....*....|....*....|...
gi 42795417 340 TVSPLSCDSEHTMGTLKHTCIMM 362
Cdd:cd01367 306 TISPGASSCEHTLNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
41-356 2.64e-78

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 245.95  E-value: 2.64e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    41 RKRPTFEREVNAGEYDVVTCRPHEIIVHDCRMHPSMKPslayVESFKFpypnTEVFGERSTTEELYRSAVKPLIQFVAAG 120
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVDSETVESSHLTNKNR----TKTFTF----DKVFDPEATQEDVYEETAKPLVESVLEG 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   121 NVGTMFCFGQTGSGKTYTIT------GLVKMLSQELFSLIAKLPGTYSVTATC--IELIGENCFDLLSE----HQEVQLR 188
Cdd:pfam00225  73 YNVTIFAYGQTGSGKTYTMEgsdeqpGIIPRALEDLFDRIQKTKERSEFSVKVsyLEIYNEKIRDLLSPsnknKRKLRIR 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   189 DGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQF------ARLTLCDLA 262
Cdd:pfam00225 153 EDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGeesvktGKLNLVDLA 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   263 GSERNNDSNEHDAERLKETAQINSSLMALKEVIRcvALNkEGDKVHVPYRGSKLTRLLKDCFDLEEKkkrphTVVIATVS 342
Cdd:pfam00225 233 GSERASKTGAAGGQRLKEAANINKSLSALGNVIS--ALA-DKKSKHIPYRDSKLTRLLQDSLGGNSK-----TLMIANIS 304
                         330
                  ....*....|....
gi 42795417   343 PLSCDSEHTMGTLK 356
Cdd:pfam00225 305 PSSSNYEETLSTLR 318
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
36-356 6.37e-75

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 237.47  E-value: 6.37e-75
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417     36 VKVYIRKRPTFEREVNAGEYDVVTCRPHEIIvhDCRMHPSMKPSLAYveSFKFPYpnteVFGERSTTEELYRSAVKPLIQ 115
Cdd:smart00129   2 IRVVVRVRPLNKREKSRKSPSVVPFPDKVGK--TLTVRSPKNRQGEK--KFTFDK----VFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    116 FVAAGNVGTMFCFGQTGSGKTYTIT------GLVKMLSQELFSLIAKLPGT--YSVTATCIELIGENCFDLLSEH-QEVQ 186
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIgtpdspGIIPRALKDLFEKIDKREEGwqFSVKVSYLEIYNEKIRDLLNPSsKKLE 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    187 LRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQ-----FARLTLCDL 261
Cdd:smart00129 154 IREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSsgsgkASKLNLVDL 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    262 AGSERNNDSNeHDAERLKETAQINSSLMALKEVIRcvALNKEGDKVHVPYRGSKLTRLLKDCFDLEEKkkrphTVVIATV 341
Cdd:smart00129 234 AGSERAKKTG-AEGDRLKEAGNINKSLSALGNVIN--ALAQHSKSRHIPYRDSKLTRLLQDSLGGNSK-----TLMIANV 305
                          330
                   ....*....|....*
gi 42795417    342 SPLSCDSEHTMGTLK 356
Cdd:smart00129 306 SPSSSNLEETLSTLR 320
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
94-356 4.05e-46

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 167.61  E-value: 4.05e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  94 EVFGERSTTEELYRSAVKPLIQFVAAGNVGTMFCFGQTGSGKTYTITGLVKMLSQ------ELFSLIAKLPGT--YSVTA 165
Cdd:COG5059  62 KVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIiplslkELFSKLEDLSMTkdFAVSI 141
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 166 TCIELIGENCFDLLSEHQEVQL-RDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYI 244
Cdd:COG5059 142 SYLEIYNEKIYDLLSPNEESLNiREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIEL 221
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 245 ENAETGKQF---ARLTLCDLAGSERNNDSNEHDaERLKETAQINSSLMALKEVIRcvALNKEGDKVHVPYRGSKLTRLLK 321
Cdd:COG5059 222 ASKNKVSGTsetSKLSLVDLAGSERAARTGNRG-TRLKEGASINKSLLTLGNVIN--ALGDKKKSGHIPYRESKLTRLLQ 298
                       250       260       270
                ....*....|....*....|....*....|....*
gi 42795417 322 DCfdLEEKKKrphTVVIATVSPLSCDSEHTMGTLK 356
Cdd:COG5059 299 DS--LGGNCN---TRVICTISPSSNSFEETINTLK 328
PLN03188 PLN03188
kinesin-12 family protein; Provisional
23-382 6.76e-25

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 108.10  E-value: 6.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    23 MAVSPSTEKSDDVVKVYIRKRPtfereVNAGEYDvvtcrphEIIVHDCRmhpsmKPSLAYVE-SFKFpypnTEVFGERST 101
Cdd:PLN03188   87 AETAPENGVSDSGVKVIVRMKP-----LNKGEEG-------EMIVQKMS-----NDSLTINGqTFTF----DSIADPEST 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   102 TEELYRSAVKPLIQFVAAGNVGTMFCFGQTGSGKTYTITGLVKMLSQE----------------LFSLI-------AKLP 158
Cdd:PLN03188  146 QEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEhlsgdqqgltprvferLFARIneeqikhADRQ 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   159 GTYSVTATCIELIGENCFDLLSEHQE-VQLR-DGKTGDVVICGNKLCALTSgSELNELYNYAAGLRETHATKVNSTSSRS 236
Cdd:PLN03188  226 LKYQCRCSFLEIYNEQITDLLDPSQKnLQIReDVKSGVYVENLTEEYVKTM-KDVTQLLIKGLSNRRTGATSINAESSRS 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   237 HYICRVYIEN-----AETGKQF--ARLTLCDLAGSERNNdSNEHDAERLKETAQINSSLMALKEVIRCVA-LNKEGDKVH 308
Cdd:PLN03188  305 HSVFTCVVESrcksvADGLSSFktSRINLVDLAGSERQK-LTGAAGDRLKEAGNINRSLSQLGNLINILAeISQTGKQRH 383
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42795417   309 VPYRGSKLTRLLKDCFDLEEKkkrphTVVIATVSPL-SCDSEhTMGTLKhtcimMSNEASSDGEKMVVQDILGSD 382
Cdd:PLN03188  384 IPYRDSRLTFLLQESLGGNAK-----LAMVCAISPSqSCKSE-TFSTLR-----FAQRAKAIKNKAVVNEVMQDD 447
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
35-362 2.95e-153

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 437.11  E-value: 2.95e-153
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  35 VVKVYIRKRPTFEREVNAGEYDVVTCRPH-EIIVH--DCRMHPSMKPSlayVESFKFPYpnteVFGERSTTEELYRSAVK 111
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKlTLIVHepKLKVDLTKYIE---NHTFRFDY----VFDESSSNETVYRSTVK 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 112 PLIQFVAAGNVGTMFCFGQTGSGKTYTIT----------GLVKMLSQELFSLIAKLP--GTYSVTATCIELIGENCFDLL 179
Cdd:cd01367  74 PLVPHIFEGGKATCFAYGQTGSGKTYTMGgdfsgqeeskGIYALAARDVFRLLNKLPykDNLGVTVSFFEIYGGKVFDLL 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 180 SEHQEVQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQFARLTLC 259
Cdd:cd01367 154 NRKKRVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTNKLHGKLSFV 233
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 260 DLAGSERNNDSNEHDAERLKETAQINSSLMALKEVIRCVALNkegdKVHVPYRGSKLTRLLKDCFDLEekkkRPHTVVIA 339
Cdd:cd01367 234 DLAGSERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN----KAHIPFRGSKLTQVLKDSFIGE----NSKTCMIA 305
                       330       340
                ....*....|....*....|...
gi 42795417 340 TVSPLSCDSEHTMGTLKHTCIMM 362
Cdd:cd01367 306 TISPGASSCEHTLNTLRYADRVK 328
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
36-356 1.90e-80

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 251.41  E-value: 1.90e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREvNAGEYDVVTCRPHEIIVHDCRMHPSMKPslayvESFKFpypnTEVFGERSTTEELYRSAVKPLIQ 115
Cdd:cd00106   2 VRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKNRVAPP-----KTFAF----DAVFDSTSTQEEVYEGTAKPLVD 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 116 FVAAGNVGTMFCFGQTGSGKTYTIT-------GLVKMLSQELFSLIAKLPGT---YSVTATCIELIGENCFDLLSEHQE- 184
Cdd:cd00106  72 SALEGYNGTIFAYGQTGSGKTYTMLgpdpeqrGIIPRALEDIFERIDKRKETkssFSVSASYLEIYNEKIYDLLSPVPKk 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 185 -VQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQF-----ARLTL 258
Cdd:cd00106 152 pLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREKSGesvtsSKLNL 231
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 259 CDLAGSERNNDSnEHDAERLKETAQINSSLMALKEVIRcvALNkEGDKVHVPYRGSKLTRLLKDCFDLEEKkkrphTVVI 338
Cdd:cd00106 232 VDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVIS--ALA-DGQNKHIPYRDSKLTRLLQDSLGGNSK-----TIMI 302
                       330
                ....*....|....*...
gi 42795417 339 ATVSPLSCDSEHTMGTLK 356
Cdd:cd00106 303 ACISPSSENFEETLSTLR 320
Kinesin pfam00225
Kinesin motor domain;
41-356 2.64e-78

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 245.95  E-value: 2.64e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    41 RKRPTFEREVNAGEYDVVTCRPHEIIVHDCRMHPSMKPslayVESFKFpypnTEVFGERSTTEELYRSAVKPLIQFVAAG 120
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVDSETVESSHLTNKNR----TKTFTF----DKVFDPEATQEDVYEETAKPLVESVLEG 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   121 NVGTMFCFGQTGSGKTYTIT------GLVKMLSQELFSLIAKLPGTYSVTATC--IELIGENCFDLLSE----HQEVQLR 188
Cdd:pfam00225  73 YNVTIFAYGQTGSGKTYTMEgsdeqpGIIPRALEDLFDRIQKTKERSEFSVKVsyLEIYNEKIRDLLSPsnknKRKLRIR 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   189 DGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQF------ARLTLCDLA 262
Cdd:pfam00225 153 EDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGeesvktGKLNLVDLA 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   263 GSERNNDSNEHDAERLKETAQINSSLMALKEVIRcvALNkEGDKVHVPYRGSKLTRLLKDCFDLEEKkkrphTVVIATVS 342
Cdd:pfam00225 233 GSERASKTGAAGGQRLKEAANINKSLSALGNVIS--ALA-DKKSKHIPYRDSKLTRLLQDSLGGNSK-----TLMIANIS 304
                         330
                  ....*....|....
gi 42795417   343 PLSCDSEHTMGTLK 356
Cdd:pfam00225 305 PSSSNYEETLSTLR 318
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
36-356 6.37e-75

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 237.47  E-value: 6.37e-75
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417     36 VKVYIRKRPTFEREVNAGEYDVVTCRPHEIIvhDCRMHPSMKPSLAYveSFKFPYpnteVFGERSTTEELYRSAVKPLIQ 115
Cdd:smart00129   2 IRVVVRVRPLNKREKSRKSPSVVPFPDKVGK--TLTVRSPKNRQGEK--KFTFDK----VFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    116 FVAAGNVGTMFCFGQTGSGKTYTIT------GLVKMLSQELFSLIAKLPGT--YSVTATCIELIGENCFDLLSEH-QEVQ 186
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIgtpdspGIIPRALKDLFEKIDKREEGwqFSVKVSYLEIYNEKIRDLLNPSsKKLE 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    187 LRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQ-----FARLTLCDL 261
Cdd:smart00129 154 IREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSsgsgkASKLNLVDL 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    262 AGSERNNDSNeHDAERLKETAQINSSLMALKEVIRcvALNKEGDKVHVPYRGSKLTRLLKDCFDLEEKkkrphTVVIATV 341
Cdd:smart00129 234 AGSERAKKTG-AEGDRLKEAGNINKSLSALGNVIN--ALAQHSKSRHIPYRDSKLTRLLQDSLGGNSK-----TLMIANV 305
                          330
                   ....*....|....*
gi 42795417    342 SPLSCDSEHTMGTLK 356
Cdd:smart00129 306 SPSSSNLEETLSTLR 320
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
36-357 6.23e-57

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 191.00  E-value: 6.23e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREVNAGEYDVVTCRPHEIIVhdcrmhpsmkpSLAYVESFKFPYpnteVFGERSTTEELYRSAVKPLIQ 115
Cdd:cd01372   3 VRVAVRVRPLLPKEIIEGCRICVSFVPGEPQV-----------TVGTDKSFTFDY----VFDPSTEQEEVYNTCVAPLVD 67
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 116 FVAAGNVGTMFCFGQTGSGKTYTI------------TGLVKMLSQELFSLIAKLPGT--YSVTATCIELIGENCFDLLSE 181
Cdd:cd01372  68 GLFEGYNATVLAYGQTGSGKTYTMgtaytaeedeeqVGIIPRAIQHIFKKIEKKKDTfeFQLKVSFLEIYNEEIRDLLDP 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 182 HQE----VQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIE----------NA 247
Cdd:cd01372 148 ETDkkptISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEqtkkngpiapMS 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 248 ETGKQ---FARLTLCDLAGSERNNDSNEhDAERLKETAQINSSLMALKEVIrcVALNKEGDK-VHVPYRGSKLTRLLKDC 323
Cdd:cd01372 228 ADDKNstfTSKFHFVDLAGSERLKRTGA-TGDRLKEGISINSGLLALGNVI--SALGDESKKgAHVPYRDSKLTRLLQDS 304
                       330       340       350
                ....*....|....*....|....*....|....
gi 42795417 324 FDleekkKRPHTVVIATVSPLSCDSEHTMGTLKH 357
Cdd:cd01372 305 LG-----GNSHTLMIACVSPADSNFEETLNTLKY 333
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
36-356 1.32e-55

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 186.77  E-value: 1.32e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREVNAGEYDVVTCRPHEIIvhdcrmhpsmkpslaYVESFKFPYPNTEVFGERSTTEELYRSAVKPLIQ 115
Cdd:cd01374   2 ITVTVRVRPLNSREIGINEQVAWEIDNDTIY---------------LVEPPSTSFTFDHVFGGDSTNREVYELIAKPVVK 66
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 116 FVAAGNVGTMFCFGQTGSGKTYTIT------GLVKMLSQELFSLIAKLPGT-YSVTATCIELIGENCFDLLS-EHQEVQL 187
Cdd:cd01374  67 SALEGYNGTIFAYGQTSSGKTFTMSgdedepGIIPLAIRDIFSKIQDTPDReFLLRVSYLEIYNEKINDLLSpTSQNLKI 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 188 RDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGK------QFARLTLCDL 261
Cdd:cd01374 147 RDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEleegtvRVSTLNLIDL 226
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 262 AGSERNNDSNEhDAERLKETAQINSSLMALKEVIRcvALNKEGDKVHVPYRGSKLTRLLKDCFDleekkKRPHTVVIATV 341
Cdd:cd01374 227 AGSERAAQTGA-AGVRRKEGSHINKSLLTLGTVIS--KLSEGKVGGHIPYRDSKLTRILQPSLG-----GNSRTAIICTI 298
                       330
                ....*....|....*
gi 42795417 342 SPLSCDSEHTMGTLK 356
Cdd:cd01374 299 TPAESHVEETLNTLK 313
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
36-357 6.38e-54

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 182.93  E-value: 6.38e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREVNAGEYDVVTCRPHEIIVHDcrmhpsmkPSLAYVESFKFPYPNTE---------------VFGERS 100
Cdd:cd01370   2 LTVAVRVRPFSEKEKNEGFRRIVKVMDNHMLVFD--------PKDEEDGFFHGGSNNRDrrkrrnkelkyvfdrVFDETS 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 101 TTEELYRSAVKPLIQFVAAGNVGTMFCFGQTGSGKTYTIT------GLVKMLSQELFSLI--AKLPGTYSVTATCIELIG 172
Cdd:cd01370  74 TQEEVYEETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLgtpqepGLMVLTMKELFKRIesLKDEKEFEVSMSYLEIYN 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 173 ENCFDLLSEHQEV-QLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIE------ 245
Cdd:cd01370 154 ETIRDLLNPSSGPlELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRqqdkta 233
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 246 NAETGKQFARLTLCDLAGSERNNDSNEHDAeRLKETAQINSSLMALKEVIRCVALNKEGDKvHVPYRGSKLTRLLKDCFD 325
Cdd:cd01370 234 SINQQVRQGKLSLIDLAGSERASATNNRGQ-RLKEGANINRSLLALGNCINALADPGKKNK-HIPYRDSKLTRLLKDSLG 311
                       330       340       350
                ....*....|....*....|....*....|..
gi 42795417 326 LEEKkkrphTVVIATVSPLSCDSEHTMGTLKH 357
Cdd:cd01370 312 GNCR-----TVMIANISPSSSSYEETHNTLKY 338
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
36-356 2.80e-53

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 180.87  E-value: 2.80e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREVNaGEYDVVTcRPHE--IIVHDCRMHPSMKpslayveSFKFpypnTEVFGERSTTEELYRSaVKPL 113
Cdd:cd01366   4 IRVFCRVRPLLPSEEN-EDTSHIT-FPDEdgQTIELTSIGAKQK-------EFSF----DKVFDPEASQEDVFEE-VSPL 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 114 IQFVAAG-NVgTMFCFGQTGSGKTYTITGLVKMLS------QELFSLIAKLPG---TYSVTATCIELIGENCFDLLSEHQ 183
Cdd:cd01366  70 VQSALDGyNV-CIFAYGQTGSGKTYTMEGPPESPGiipralQELFNTIKELKEkgwSYTIKASMLEIYNETIRDLLAPGN 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 184 EVQLR-----DGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIE--NAETGKQ-FAR 255
Cdd:cd01366 149 APQKKleirhDSEKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISgrNLQTGEIsVGK 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 256 LTLCDLAGSERNNDSNEhDAERLKETAQINSSLMALKEVIRcvALNKEGDkvHVPYRGSKLTRLLKDCfdLEEKKKrphT 335
Cdd:cd01366 229 LNLVDLAGSERLNKSGA-TGDRLKETQAINKSLSALGDVIS--ALRQKQS--HIPYRNSKLTYLLQDS--LGGNSK---T 298
                       330       340
                ....*....|....*....|.
gi 42795417 336 VVIATVSPLSCDSEHTMGTLK 356
Cdd:cd01366 299 LMFVNISPAESNLNETLNSLR 319
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
34-357 2.67e-51

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 176.11  E-value: 2.67e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  34 DVVKVYIRKRPTFEREVNAGEYDVVTCRPH--EIIVHDCRMHPSMKPslayvESFKFPYpnteVFGERSTTEELYRSAVK 111
Cdd:cd01371   1 ENVKVVVRCRPLNGKEKAAGALQIVDVDEKrgQVSVRNPKATANEPP-----KTFTFDA----VFDPNSKQLDVYDETAR 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 112 PLIQFVAAGNVGTMFCFGQTGSGKTYTITGlVKMLSQE----------LFSLIAKLPGT--YSVTATCIELIGENCFDLL 179
Cdd:cd01371  72 PLVDSVLEGYNGTIFAYGQTGTGKTYTMEG-KREDPELrgiipnsfahIFGHIARSQNNqqFLVRVSYLEIYNEEIRDLL 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 180 SEHQ--EVQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGK------ 251
Cdd:cd01371 151 GKDQtkRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKGEdgenhi 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 252 QFARLTLCDLAGSERNNDSNEhDAERLKETAQINSSLMALKEVIRCVAlnkEGDKVHVPYRGSKLTRLLKDCFDLEEKkk 331
Cdd:cd01371 231 RVGKLNLVDLAGSERQSKTGA-TGERLKEATKINLSLSALGNVISALV---DGKSTHIPYRDSKLTRLLQDSLGGNSK-- 304
                       330       340
                ....*....|....*....|....*.
gi 42795417 332 rphTVVIATVSPLSCDSEHTMGTLKH 357
Cdd:cd01371 305 ---TVMCANIGPADYNYDETLSTLRY 327
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
36-355 2.04e-49

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 171.35  E-value: 2.04e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREVNAGEYDVVTCRP--HEIIVHdcrmHPSMKPSLAyVESFKFpypnTEVFGERSTTEELYRSAVKPL 113
Cdd:cd01364   4 IQVVVRCRPFNLRERKASSHSVVEVDPvrKEVSVR----TGGLADKSS-TKTYTF----DMVFGPEAKQIDVYRSVVCPI 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 114 IQFVAAGNVGTMFCFGQTGSGKTYTITG---LVKMLSQELFSLIAKLPGT--------------YSVTATCIELIGENCF 176
Cdd:cd01364  75 LDEVLMGYNCTIFAYGQTGTGKTYTMEGdrsPNEEYTWELDPLAGIIPRTlhqlfekledngteYSVKVSYLEIYNEELF 154
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 177 DLLSEHQEVQLR------DGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYI---ENA 247
Cdd:cd01364 155 DLLSPSSDVSERlrmfddPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIhikETT 234
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 248 ETGKQFAR---LTLCDLAGSERNNDSNEHDaERLKETAQINSSLMALKEVIRcvALNKEGDkvHVPYRGSKLTRLLKDcf 324
Cdd:cd01364 235 IDGEELVKigkLNLVDLAGSENIGRSGAVD-KRAREAGNINQSLLTLGRVIT--ALVERAP--HVPYRESKLTRLLQD-- 307
                       330       340       350
                ....*....|....*....|....*....|.
gi 42795417 325 DLEEKKKrphTVVIATVSPLSCDSEHTMGTL 355
Cdd:cd01364 308 SLGGRTK---TSIIATISPASVNLEETLSTL 335
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
94-356 4.05e-46

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 167.61  E-value: 4.05e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  94 EVFGERSTTEELYRSAVKPLIQFVAAGNVGTMFCFGQTGSGKTYTITGLVKMLSQ------ELFSLIAKLPGT--YSVTA 165
Cdd:COG5059  62 KVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIiplslkELFSKLEDLSMTkdFAVSI 141
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 166 TCIELIGENCFDLLSEHQEVQL-RDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYI 244
Cdd:COG5059 142 SYLEIYNEKIYDLLSPNEESLNiREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIEL 221
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 245 ENAETGKQF---ARLTLCDLAGSERNNDSNEHDaERLKETAQINSSLMALKEVIRcvALNKEGDKVHVPYRGSKLTRLLK 321
Cdd:COG5059 222 ASKNKVSGTsetSKLSLVDLAGSERAARTGNRG-TRLKEGASINKSLLTLGNVIN--ALGDKKKSGHIPYRESKLTRLLQ 298
                       250       260       270
                ....*....|....*....|....*....|....*
gi 42795417 322 DCfdLEEKKKrphTVVIATVSPLSCDSEHTMGTLK 356
Cdd:COG5059 299 DS--LGGNCN---TRVICTISPSSNSFEETINTLK 328
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
34-356 1.53e-45

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 161.02  E-value: 1.53e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  34 DVVKVYIRKRPTFEREVNAGEYDVVTCRPHEIIV----HDCRMHPSMKPSLAYVESFKFpypnTEVFGERSTTEELYRSA 109
Cdd:cd01368   1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTVVlhppKGSAANKSERNGGQKETKFSF----SKVFGPNTTQKEFFQGT 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 110 VKPLIQFVAAGNVGTMFCFGQTGSGKTYTITGLVK---MLSQELfSLIAKLPGTYSVTATCIELIGENCFDLLSE----- 181
Cdd:cd01368  77 ALPLVQDLLHGKNGLLFTYGVTNSGKTYTMQGSPGdggILPRSL-DVIFNSIGGYSVFVSYIEIYNEYIYDLLEPspssp 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 182 ---HQEVQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQ------ 252
Cdd:cd01368 156 tkkRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLVQAPGDSDgdvdqd 235
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 253 -----FARLTLCDLAGSERNNDSnEHDAERLKETAQINSSLMALKEVIRCVALN-KEGDKVHVPYRGSKLTRLLKDCFDL 326
Cdd:cd01368 236 kdqitVSQLSLVDLAGSERTSRT-QNTGERLKEAGNINTSLMTLGTCIEVLRENqLQGTNKMVPFRDSKLTHLFQNYFDG 314
                       330       340       350
                ....*....|....*....|....*....|
gi 42795417 327 EEKkkrphTVVIATVSPLSCDSEHTMGTLK 356
Cdd:cd01368 315 EGK-----ASMIVNVNPCASDYDETLHVMK 339
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
36-355 2.92e-44

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 156.89  E-value: 2.92e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREVNAGEYDVVT-CRPHEIIVHDCRMHpsmkpslAYVESFKFpypnTEVFGERSTTEELYRSAVKPLI 114
Cdd:cd01376   2 VRVAVRVRPFVDGTAGASDPSCVSgIDSCSVELADPRNH-------GETLKYQF----DAFYGEESTQEDIYAREVQPIV 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 115 QFVAAGNVGTMFCFGQTGSGKTYTIT------GLVKMLSQELFSLIAKLPGTYSVTATCIELIGENCFDLLS-EHQEVQL 187
Cdd:cd01376  71 PHLLEGQNATVFAYGSTGAGKTFTMLgspeqpGLMPLTVMDLLQMTRKEAWALSFTMSYLEIYQEKILDLLEpASKELVI 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 188 RDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQFARLT----LCDLAG 263
Cdd:cd01376 151 REDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLAPFRQRTgklnLIDLAG 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 264 SERNNDSNeHDAERLKETAQINSSLMALKEVIRcvALNKEGDKvhVPYRGSKLTRLLKDCFDleekkKRPHTVVIATVSP 343
Cdd:cd01376 231 SEDNRRTG-NEGIRLKESGAINSSLFVLSKVVN--ALNKNLPR--IPYRDSKLTRLLQDSLG-----GGSRCIMVANIAP 300
                       330
                ....*....|..
gi 42795417 344 LSCDSEHTMGTL 355
Cdd:cd01376 301 ERTFYQDTLSTL 312
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
36-359 1.42e-43

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 156.36  E-value: 1.42e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREVNAGEYDVVTCRPHEIIV-HDCRMHPSMKPSLAYVESFKFPYPNTEVFGERS---TTEELYRSAVK 111
Cdd:cd01365   3 VKVAVRVRPFNSREKERNSKCIVQMSGKETTLkNPKQADKNNKATREVPKSFSFDYSYWSHDSEDPnyaSQEQVYEDLGE 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 112 PLIQFVAAGNVGTMFCFGQTGSGKTYTIT------GLVKMLSQELFSLIAKLPGT---YSVTATCIELIGENCFDLLS-- 180
Cdd:cd01365  83 ELLQHAFEGYNVCLFAYGQTGSGKSYTMMgtqeqpGIIPRLCEDLFSRIADTTNQnmsYSVEVSYMEIYNEKVRDLLNpk 162
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 181 -EHQEVQLR---DGKTGDVVIcGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYI--------ENAE 248
Cdd:cd01365 163 pKKNKGNLKvreHPVLGPYVE-DLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLtqkrhdaeTNLT 241
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 249 TGKQfARLTLCDLAGSERNNdSNEHDAERLKETAQINSSLMALKEVIRCVALN----KEGDKVHVPYRGSKLTRLLKDCF 324
Cdd:cd01365 242 TEKV-SKISLVDLAGSERAS-STGATGDRLKEGANINKSLTTLGKVISALADMssgkSKKKSSFIPYRDSVLTWLLKENL 319
                       330       340       350
                ....*....|....*....|....*....|....*
gi 42795417 325 DLEEKkkrphTVVIATVSPLSCDSEHTMGTLKHTC 359
Cdd:cd01365 320 GGNSK-----TAMIAAISPADINYEETLSTLRYAD 349
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
34-356 2.41e-43

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 155.36  E-value: 2.41e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  34 DVVKVYIRKRPTFEREVNAGEYDVVTCRPHEIIVhdCRMHPSMKpslayvesFKFPYpnteVFGERSTTEELYRSAVKPL 113
Cdd:cd01373   1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLV--LHSKPPKT--------FTFDH----VADSNTNQESVFQSVGKPI 66
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 114 IQFVAAGNVGTMFCFGQTGSGKTYTI--------------TGLVKMLSQELFSLI------AKLPGTYSVTATCIELIGE 173
Cdd:cd01373  67 VESCLSGYNGTIFAYGQTGSGKTYTMwgpsesdnesphglRGVIPRIFEYLFSLIqrekekAGEGKSFLCKCSFLEIYNE 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 174 NCFDLLSEHQE-VQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYIENAETGKQ 252
Cdd:cd01373 147 QIYDLLDPASRnLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKAC 226
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 253 F-----ARLTLCDLAGSERNNDSnehDAE--RLKETAQINSSLMALKEVIRCVALNKEGDKVHVPYRGSKLTRLLKDCFD 325
Cdd:cd01373 227 FvnirtSRLNLVDLAGSERQKDT---HAEgvRLKEAGNINKSLSCLGHVINALVDVAHGKQRHVCYRDSKLTFLLRDSLG 303
                       330       340       350
                ....*....|....*....|....*....|.
gi 42795417 326 LEEKkkrphTVVIATVSPLSCDSEHTMGTLK 356
Cdd:cd01373 304 GNAK-----TAIIANVHPSSKCFGETLSTLR 329
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
36-355 1.30e-42

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 152.48  E-value: 1.30e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPTFEREVNAGEYDVVTCRPHEIIVHDcrmhpsmkpSLAYVESFKFPYpnteVFGERSTTEELYRSAVKPLIQ 115
Cdd:cd01369   4 IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIA---------TSETGKTFSFDR----VFDPNTTQEDVYNFAAKPIVD 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 116 FVAAGNVGTMFCFGQTGSGKTYTIT---------GLVKMLSQELFSLIAKLPGT--YSVTATCIELIGENCFDLLSEHQE 184
Cdd:cd01369  71 DVLNGYNGTIFAYGQTSSGKTYTMEgklgdpesmGIIPRIVQDIFETIYSMDENleFHVKVSYFEIYMEKIRDLLDVSKT 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 185 -VQLRDGKTGDVVICGNKLCALTSGSELNELYNYAAGLRETHATKVNSTSSRSHYICRVYI--ENAETG-KQFARLTLCD 260
Cdd:cd01369 151 nLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVkqENVETEkKKSGKLYLVD 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 261 LAGSERNNDSNEHDAErLKETAQINSSLMALKEVIRCVAlnkEGDKVHVPYRGSKLTRLLKDCFDLEEKkkrphTVVIAT 340
Cdd:cd01369 231 LAGSEKVSKTGAEGAV-LDEAKKINKSLSALGNVINALT---DGKKTHIPYRDSKLTRILQDSLGGNSR-----TTLIIC 301
                       330
                ....*....|....*
gi 42795417 341 VSPLSCDSEHTMGTL 355
Cdd:cd01369 302 CSPSSYNESETLSTL 316
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
36-356 9.02e-31

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 120.76  E-value: 9.02e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  36 VKVYIRKRPT--FEREVNAGEYDVVTCRPHEIIvhDCRMHPSMKPSLAYveSFKFpypnTEVFgERSTTEELYRSAVKPL 113
Cdd:cd01375   2 VQAFVRVRPTddFAHEMIKYGEDGKSISIHLKK--DLRRGVVNNQQEDW--SFKF----DGVL-HNASQELVYETVAKDV 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 114 IQFVAAGNVGTMFCFGQTGSGKTYTIT---------GLVKMLSQELFSLIAKLPG-TYSVTATCIELIGENCFDLLSEHQ 183
Cdd:cd01375  73 VSSALAGYNGTIFAYGQTGAGKTFTMTggtenykhrGIIPRALQQVFRMIEERPTkAYTVHVSYLEIYNEQLYDLLSTLP 152
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 184 EVQ--------LRDGKTGdVVICGNKLCALTSGSE-LNELYNYAAGlRETHATKVNSTSSRSHYICRVYIEN-----AET 249
Cdd:cd01375 153 YVGpsvtpmtiLEDSPQN-IFIKGLSLHLTSQEEEaLSLLFLGETN-RIIASHTMNKNSSRSHCIFTIHLEAhsrtlSSE 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 250 GKQFARLTLCDLAGSERNNDSNEhDAERLKETAQINSSLMALKEVIrcVALNKEgDKVHVPYRGSKLTRLLKDCFDLEEK 329
Cdd:cd01375 231 KYITSKLNLVDLAGSERLSKTGV-EGQVLKEATYINKSLSFLEQAI--IALSDK-DRTHVPFRQSKLTHVLRDSLGGNCN 306
                       330       340
                ....*....|....*....|....*..
gi 42795417 330 kkrphTVVIATVSPLSCDSEHTMGTLK 356
Cdd:cd01375 307 -----TVMVANIYGEAAQLEETLSTLR 328
PLN03188 PLN03188
kinesin-12 family protein; Provisional
23-382 6.76e-25

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 108.10  E-value: 6.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    23 MAVSPSTEKSDDVVKVYIRKRPtfereVNAGEYDvvtcrphEIIVHDCRmhpsmKPSLAYVE-SFKFpypnTEVFGERST 101
Cdd:PLN03188   87 AETAPENGVSDSGVKVIVRMKP-----LNKGEEG-------EMIVQKMS-----NDSLTINGqTFTF----DSIADPEST 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   102 TEELYRSAVKPLIQFVAAGNVGTMFCFGQTGSGKTYTITGLVKMLSQE----------------LFSLI-------AKLP 158
Cdd:PLN03188  146 QEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEhlsgdqqgltprvferLFARIneeqikhADRQ 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   159 GTYSVTATCIELIGENCFDLLSEHQE-VQLR-DGKTGDVVICGNKLCALTSgSELNELYNYAAGLRETHATKVNSTSSRS 236
Cdd:PLN03188  226 LKYQCRCSFLEIYNEQITDLLDPSQKnLQIReDVKSGVYVENLTEEYVKTM-KDVTQLLIKGLSNRRTGATSINAESSRS 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417   237 HYICRVYIEN-----AETGKQF--ARLTLCDLAGSERNNdSNEHDAERLKETAQINSSLMALKEVIRCVA-LNKEGDKVH 308
Cdd:PLN03188  305 HSVFTCVVESrcksvADGLSSFktSRINLVDLAGSERQK-LTGAAGDRLKEAGNINRSLSQLGNLINILAeISQTGKQRH 383
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42795417   309 VPYRGSKLTRLLKDCFDLEEKkkrphTVVIATVSPL-SCDSEhTMGTLKhtcimMSNEASSDGEKMVVQDILGSD 382
Cdd:PLN03188  384 IPYRDSRLTFLLQESLGGNAK-----LAMVCAISPSqSCKSE-TFSTLR-----FAQRAKAIKNKAVVNEVMQDD 447
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
95-296 4.60e-08

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 52.35  E-value: 4.60e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417  95 VFGERSTTEELYRSAVkPLIQFVAAG-NVGTMFCFGQTGSGKTYTITGLVKMLSQELFSLIAKLPGTYSVTATCIELIGE 173
Cdd:cd01363  25 GFRRSESQPHVFAIAD-PAYQSMLDGyNNQSIFAYGESGAGKTETMKGVIPYLASVAFNGINKGETEGWVYLTEITVTLE 103
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417 174 NcfdllsehqevQLRDgktgdvvicgnklcaltsgseLNELYNyAAGlreTHATKVNSTSSRSHYICRVyienaetgkqf 253
Cdd:cd01363 104 D-----------QILQ---------------------ANPILE-AFG---NAKTTRNENSSRFGKFIEI----------- 136
                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 42795417 254 arltLCDLAGSERnndsnehdaerlketaqINSSLMALKEVIR 296
Cdd:cd01363 137 ----LLDIAGFEI-----------------INESLNTLMNVLR 158
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
85-179 5.23e-04

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 40.28  E-value: 5.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42795417    85 SFKFpypnTEVFGERSTTEELYRSaVKPLIQFVAAG-NVgTMFCFGQTGSGKTY-TITGLVKMLSQELFSLiAKLPgTYS 162
Cdd:pfam16796  56 SFSF----DRVFPPESEQEDVFQE-ISQLVQSCLDGyNV-CIFAYGQTGSGSNDgMIPRAREQIFRFISSL-KKGW-KYT 127
                          90
                  ....*....|....*..
gi 42795417   163 VTATCIELIGENCFDLL 179
Cdd:pfam16796 128 IELQFVEIYNESSQDLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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