NCBI Conserved Domain Search

Conserved domains on [gi|56193096|gb|AAV84159|]

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rev protein [Human immunodeficiency virus 1]

Protein Classification

REV protein( domain architecture ID 140)

REV protein escorts unspliced or incompletely spliced viral pre-mRNAs (late transcripts) out of the nucleus of infected cells

CATH: 1.10.287.2030

Gene Ontology: GO:0003700|GO:0006355|GO:0051028|GO:0003723|GO:0016032

PubMed: 2550674|2656990|2741343

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

REV super family

cl02864

REV protein (anti-repression trans-activator protein);

1-90

6.71e-26

REV protein (anti-repression trans-activator protein);

The actual alignment was detected with superfamily member pfam00424:

Pssm-ID: 366091 Cd Length: 91 Bit Score: 92.33 E-value: 6.71e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56193096     1 MAGRSGDSDEALLQAVRIIKILYQS-PYPNPEGTRQARRNRRRRWRARQRQIRAISERILSTCLGRPAEPVPFLLPPIER 79
Cdd:pfam00424   1 MAGRSGDSDEGLQGKVRLIKLLYQSnPPPNPEGTRQARRNRRRRWRERQRQIHSISERILATYLGRSAEPVPLQLPPLER 80

                          90
                  ....*....|.
gi 56193096    80 LNINCSESGGT 90
Cdd:pfam00424  81 LTLDCNEDCGT 91

Name

Accession

Description

Interval

E-value

REV

pfam00424

REV protein (anti-repression trans-activator protein);

1-90

6.71e-26

REV protein (anti-repression trans-activator protein);

Pssm-ID: 366091 Cd Length: 91 Bit Score: 92.33 E-value: 6.71e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56193096     1 MAGRSGDSDEALLQAVRIIKILYQS-PYPNPEGTRQARRNRRRRWRARQRQIRAISERILSTCLGRPAEPVPFLLPPIER 79
Cdd:pfam00424   1 MAGRSGDSDEGLQGKVRLIKLLYQSnPPPNPEGTRQARRNRRRRWRERQRQIHSISERILATYLGRSAEPVPLQLPPLER 80

                          90
                  ....*....|.
gi 56193096    80 LNINCSESGGT 90
Cdd:pfam00424  81 LTLDCNEDCGT 91

Name

Accession

Description

Interval

E-value

REV

pfam00424

REV protein (anti-repression trans-activator protein);

1-90

6.71e-26

REV protein (anti-repression trans-activator protein);

Pssm-ID: 366091 Cd Length: 91 Bit Score: 92.33 E-value: 6.71e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56193096     1 MAGRSGDSDEALLQAVRIIKILYQS-PYPNPEGTRQARRNRRRRWRARQRQIRAISERILSTCLGRPAEPVPFLLPPIER 79
Cdd:pfam00424   1 MAGRSGDSDEGLQGKVRLIKLLYQSnPPPNPEGTRQARRNRRRRWRERQRQIHSISERILATYLGRSAEPVPLQLPPLER 80

                          90
                  ....*....|.
gi 56193096    80 LNINCSESGGT 90
Cdd:pfam00424  81 LTLDCNEDCGT 91

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01