NCBI Conserved Domain Search

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

57-136

1.81e-06

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 50.28 E-value: 1.81e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   57 VSITELYTSAATRKPdPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrKPDPAVAPTSAATRKPDPAVAPTSA 136
Cdd:TIGR00601  72 VMVSKPKTGTGKVAP-PAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSE-ESATATAPESPSTSVPSSGSDAAST 149

PspC_subgroup_2

NF033839

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

70-180

2.36e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 47.07 E-value: 2.36e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  70 KPDPAVAPTsaaTRKPDPAVAPTSaatRKPDPAVAPTSaatRKPDPAVAPtsaATRKPDPAVAPTSaasRKPDPAVAPTs 149
Cdd:NF033839 382 TPKPEVKPQ---PEKPKPEVKPQP---EKPKPEVKPQP---EKPKPEVKP---QPEKPKPEVKPQP---EKPKPEVKPQ- 445

                         90       100       110
                 ....*....|....*....|....*....|.
gi 111184745 150 aaSRKPDPAVAPTsaaSRKPDPAANTQHSQP 180
Cdd:NF033839 446 --PEKPKPEVKPQ---PETPKPEVKPQPEKP 471

KLF9_13_N-like

cd21975

Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ...

51-177

2.62e-04

Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.

Pssm-ID: 409240 [Multi-domain] Cd Length: 163 Bit Score: 41.98 E-value: 2.62e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  51 ESQPTPVSITELYTSAATRKP-DPAVAPTSAATRKPDPA-VAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD 128
Cdd:cd21975   26 EGAGLAAGLDVRATREVAKGPgPPGPAWKPDGADSPGLVtAAPHLLAANVLAPLRGPSVEGSSLESGDADMGSDSDVAPA 105

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 111184745 129 PAVAPTSAASRKPDPAVAPTSAASRKP--------DPAVAPTSAASRKPDPAANTQH 177
Cdd:cd21975  106 SGAAASTSPESSSDAASSPSPLSLLHPgeaglepeRPRPRVRRGVRRRGVTPAAKRH 162

SepH

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...

52-176

3.57e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.

Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.22 E-value: 3.57e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  52 SQPTP--VSITELYTSAATRKPDPaVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKP-DPAVAPTSAATRKPD 128
Cdd:NF040712 193 GRPLRplATVPRLAREPADARPEE-VEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPeDEPVGPGAAPAAEPD 271

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 111184745 129 PAV--APTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQ 176
Cdd:NF040712 272 EATrdAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPA 321

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

72-165

4.09e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 43.07 E-value: 4.09e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  72 DPAVAPTSAATRKPDPAVAPtsAATRKPDPAVAPTSAATRKPDPAVAPTSAAtrkPDPAVAPTSAASRKPDPAVAPTSAA 151
Cdd:NF041121  16 GRAAAPPSPEGPAPTAASQP--ATPPPPAAPPSPPGDPPEPPAPEPAPLPAP---YPGSLAPPPPPPPGPAGAAPGAALP 90

                         90
                 ....*....|....
gi 111184745 152 SRKPDPAVAPTSAA 165
Cdd:NF041121  91 VRVPAPPALPNPLE 104

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

86-173

6.76e-04

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 42.30 E-value: 6.76e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  86 DPAVAPTSAATRKPDPAVAPtsAATRKPDPAVAPTSAATRKPDPAVAPTSAASrkpDPAVAPTSAASRKPDPAVAPTSAA 165
Cdd:NF041121  16 GRAAAPPSPEGPAPTAASQP--ATPPPPAAPPSPPGDPPEPPAPEPAPLPAPY---PGSLAPPPPPPPGPAGAAPGAALP 90


                 ....*...
gi 111184745 166 SRKPDPAA 173
Cdd:NF041121  91 VRVPAPPA 98

SepH

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...

51-172

7.47e-04

Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.06 E-value: 7.47e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  51 ESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPA------VAPTSAATRKPDPAVAP-TSAATRKPDPAVAPTSAA 123
Cdd:NF040712 206 AREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLAsarrrrAGVEQPEDEPVGPGAAPaAEPDEATRDAGEPPAPGA 285

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 111184745 124 TRKPDPAVAPTSAASrKPDPAVAPTSAASRKPDPAVAPTsAASRKPDPA 172
Cdd:NF040712 286 AETPEAAEPPAPAPA-APAAPAAPEAEEPARPEPPPAPK-PKRRRRRAS 332

SepH

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...

49-159

2.76e-03

Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 40.14 E-value: 2.76e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  49 STESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAA-----TRKPDPAVAPTSAATRKPDPAVaptsaa 123
Cdd:NF040712 228 ATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATrdagePPAPGAAETPEAAEPPAPAPAA------ 301

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 111184745 124 trkPDPAVAPTSAASRKPDPAVAPTsAASRKPDPAV 159
Cdd:NF040712 302 ---PAAPAAPEAEEPARPEPPPAPK-PKRRRRRASV 333

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

65-151

5.25e-03

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 39.60 E-value: 5.25e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAAtrkPDPAVAPTSAATRKPDPAVAPTSAASRKPDPA 144
Cdd:NF041121  21 PPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAP---YPGSLAPPPPPPPGPAGAAPGAALPVRVPAPP 97


                 ....*..
gi 111184745 145 VAPTSAA 151
Cdd:NF041121  98 ALPNPLE 104

Name

Accession

Description

Interval

E-value

PHA03269

envelope glycoprotein C; Provisional

32-591

0e+00

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 1010.03 E-value: 0e+00

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  32 MKRIQINLILTIACIQLSTESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATR 111
Cdd:PHA03269   1 MKPFIIILIITIACINLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 112 KPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPPFLY----ENI 187
Cdd:PHA03269  81 KFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYtrsmEHI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 188 QCVHGGIQSIPYFHTFIMPCYMRLTTGQQAAFKQ--QQKTYEQYSLDPEGSNITRWKSLIRPDLHIEVWFTRHLIDPHRQ 265
Cdd:PHA03269 161 ACTHGGIQFIPYFHKFILPCYLQIFTGQGAAFKQheLPKTYEEDFLDPEGANITRWKPLIRPDLHIEIWFKKHLIDPHRQ 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 266 LGNALIRMPDLPVMLYSNSADLNLINNPEIFTHAKENYVIPDVKTTSDFSVTILSMDATTEGTYIWRVVNTKTKNVISEH 345
Cdd:PHA03269 241 DGNALIQMPDLPLILLSNNADLNLIMNPDIFNHAKEKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEH 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 346 SITVTTYYRPNITVVGDPVLTGQTYAAYCNVSKYYPPHSVRVRWTSRFGNIGKNFITDAIQEYANGLFSYVSAVRIPQQK 425
Cdd:PHA03269 321 HITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQK 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 426 QMDYPPPAIQCNVLWIRDGVSNMKYSAVVTPDVYPFPNVSIGIIDGHIVCTAKCVPRGVVHFVWWVNDSPINHENSEITG 505
Cdd:PHA03269 401 NADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIEIIDGHIVCLAKCVPRGVVHFNWWINDIPIEHENSEILG 480

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 506 VCDQNKRFVNMQSSCPTSELDGPITYSCHLDGYPKKFPPFSAVYTYDASTYATTFSVVAVIIGVISILGTLGLIAVIATL 585
Cdd:PHA03269 481 VCDNNKRFVNLQSSCDTSELDGPITYSCHLDGYPKKFPPFSAVYTYDASSSASTFPLIAAIIGIISIIGILGLIALIATL 560


                 ....*.
gi 111184745 586 CIRCCS 591
Cdd:PHA03269 561 CIRCCK 566

PHA03273

envelope glycoprotein C; Provisional

120-589

4.00e-59

envelope glycoprotein C; Provisional

Pssm-ID: 223031 Cd Length: 486 Bit Score: 204.85 E-value: 4.00e-59

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 120 TSAATRKPDPAVAPTSAASRKPDPaVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPPFLYENIQCVHGGIqSIPY 199
Cdd:PHA03273  25 ASGASTSSSIENSDNSTAEMQSTP-ATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQPHSHETTITCTKSLI-SVPY 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 200 FHTFIMPCymRLTTGQQAAFKQQQKTYEQ---YSLDPEGSNITRWKSLIRPDLHIEVWFTRHLIDPHRQLGNALIRMPDL 276
Cdd:PHA03273 103 YKSVDMNC--TTSVGVNYSEYRLEIYLNQrtpFSGTPPGDEENYVNHNATKDQTLLLFSTAERSVKSRRGGQLGVIPDRL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 277 PvmlysnsaDLNLINNPEIFTHAkenyvipdvkttSDFSVTILSMDATTEGTYIWRVVnTKTKNVISEHSITVTTYYRPN 356
Cdd:PHA03273 181 P--------KRQLFNLPLHTEGG------------TKFPLTIKSVDWRTAGVYVWSLY-AKNGTLVNSTSVTVSTYNAPL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 357 ITVVGDPVLTGQTYAAYCNVSKYYPPHSVRVRWTSRFGNI-GKNFITDAIQEYANGLFSYVSAVRIPQQKQMDYpPPAIQ 435
Cdd:PHA03273 240 VDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVdFTKYVTNASSVWVDGLITRISTLSIPVDPDEEY-TPSLR 318

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 436 CNVLWIRDGVSNMKYSAVVTPDVYPFPNVSIGIIDGHIVCTAKCVPRGVVHFVWWVNDS-PINHENSEITGVCDQNKRFV 514
Cdd:PHA03273 319 CSIEWYRDEVSFARIAKAGTPSVFVAPTVSVTVEDGDAVCTAKCVPSTGVFVSWSVNDHlPGVPSQDMTTGVCSSHPGLV 398

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 111184745 515 NMQSSCPTSELDGPITYSCHLDGYPKKFPPFSAVYTYDASTYATTFSVVAVIIGVISILGTLGLIAVIATLCIRC 589
Cdd:PHA03273 399 NMQSRRPLSEENGEREYSCIIEGYPDGLPMFSDTVVYDASPIVEDEPVLTSIIAVTCGAAALALVVLITAVCFYC 473

Marek_A

pfam02124

Marek's disease glycoprotein A; This is the Ig-like domain found from Envelope glycoprotein C ...

451-540

3.28e-38

Pssm-ID: 460453 [Multi-domain] Cd Length: 90 Bit Score: 135.70 E-value: 3.28e-38

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  451 SAVVTPDVYPFPNVSIGIIDGHIVCTAKCVPRGvVHFVWWVNDSP-INHENSEITGVCDQNKRFVNMQSSCPTSELDGPI 529
Cdd:pfam02124   1 NAVGTPLVLPRPTVSMEFPDGYAVCTAGCVPEG-VTFAWFVGDDPsPAQKNAVRTGLCCKLPRLVNILSTLPVSYLQTSV 79

                          90
                  ....*....|.
gi 111184745  530 TYSCHLDGYPK 540
Cdd:pfam02124  80 TYTCRLRGYPR 90

PHA03271

envelope glycoprotein C; Provisional

303-587

3.73e-27

envelope glycoprotein C; Provisional

Pssm-ID: 223030 [Multi-domain] Cd Length: 490 Bit Score: 115.11 E-value: 3.73e-27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 303 YVIPDVKTTSDFSVTILSMDATTEGtYIWRVVNTKTKNVISEHSITVTTYYRP-NITVVGDPVLTGQTYAAYCNVSKYYP 381
Cdd:PHA03271 196 YFIWINKTTNTMGVEIRNVDYADNG-YIQVIMRDPFNRPLLDKHIYIRVCQRPaSVDVLAPPVLSGENYKASCIVRHFYP 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 382 PHSVRVRWtSRFGNIGKNfitdaiQEYANGLFSYVSAVR-------IPQQKQMDYPPPAIQCNVLWiRDGVSNMKYSAVV 454
Cdd:PHA03271 275 PGSVYVSW-RQNGNIATP------RKDRDGSFWWFESGRgatlvstITLGNSGIDPPPKISCLVAW-KQGDMISTTNATA 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 455 TPDVYPFPNVSIGIIDGHIVCTAKCVPRGVVhFVWWVNDSPINHE--NSEITGVCDQNKRFVNMQSSCPTSELDGPITYS 532
Cdd:PHA03271 347 IPTVYHHPRISLAFKDGYAICTIECVPSGIT-VRWLVHDEPQPNTtyDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYT 425

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 111184745 533 CHLDGYPKKFPPFSAVYTYDASTYATTFSVVAVIIGVISILGTLGLIAVIATLCI 587
Cdd:PHA03271 426 CRLIGYPFDEDKFQASEYYDATPSARGSPMVLTITAVLGLALILGMGIILTALCF 480

PHA03270

envelope glycoprotein C; Provisional

349-543

1.51e-18

envelope glycoprotein C; Provisional

Pssm-ID: 165528 [Multi-domain] Cd Length: 466 Bit Score: 88.84 E-value: 1.51e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 349 VTTYYRPNITVVGDPVLTGQTYAAYCNVSKYYPPHSVRVRWtsrFGNIGKNFITDAI----QEYANGlFSYVSAVrIPQQ 424
Cdd:PHA03270 216 VRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRW---FEGGDEVFAPERVrtrvDAQRDG-FSATSTL-TSEA 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 425 KQMDYPPPAIQCNVLWIRDGVSNMKYSAVVTPDVYPFPNVSIGIIDGHIVCTAKCVPRGVVhFVWWVNDSPINHENSEIT 504
Cdd:PHA03270 291 RAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEMEFGGDEAVCTAACVPEGVT-LAWLLGADPAPAEKAAVA 369

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 111184745 505 G-VCDQNKRFVNMQSSCPTSELDGpiTYSCHLDGYPKKFP 543
Cdd:PHA03270 370 GgPCPGRPGLARVRSALPLSREHS--EYTCRLVGYPATVP 407

PRK12323

DNA polymerase III subunit gamma/tau;

51-181

1.03e-11

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 67.98 E-value: 1.03e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  51 ESQPTPVSitelytSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPdPAVAPTSAA----TRK 126
Cdd:PRK12323 371 GAGPATAA------AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRS-PAPEALAAArqasARG 443

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 111184745 127 PDPAVAPTSAASRKPDPAVAPTSAASRkPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK12323 444 PGGAPAPAPAPAAAPAAAARPAAAGPR-PVAAAAAAAPARAAPAAAPAPADDDPP 497

PRK07003

DNA polymerase III subunit gamma/tau;

74-181

2.54e-10

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 63.33 E-value: 2.54e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  74 AVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAV--APTSAATRKPDPAVAPTSAASRKPDPAVAPTSAA 151
Cdd:PRK07003 385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAapAPPATADRGDDAADGDAPVPAKANARASADSRCD 464

                         90       100       110
                 ....*....|....*....|....*....|.
gi 111184745 152 SRKPDPAVAPTSAASRKPD-PAANTQHSQPP 181
Cdd:PRK07003 465 ERDAQPPADSGSASAPASDaPPDAAFEPAPR 495

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

56-181

2.74e-10

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 63.19 E-value: 2.74e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  56 PVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAAtrkPDPAVAPTS 135
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAA---PAAAPAAAP 442

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 111184745 136 AASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAAntQHSQPP 181
Cdd:PRK14951 443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPA--AAPAAA 486

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

67-181

4.81e-10

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 62.42 E-value: 4.81e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  67 ATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVA 146
Cdd:PRK14951 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA-PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 111184745 147 PTSAASRKPDPAVAPTSAASRK----PDPAANTQHSQPP 181
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPvrvaPEPAVASAAPAPA 480

PRK07003

DNA polymerase III subunit gamma/tau;

64-174

1.11e-09

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 61.40 E-value: 1.11e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  64 TSAATRKPDPAVAPTSAATRKPDPAV--APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKP 141
Cdd:PRK07003 403 TGAAGAALAPKAAAAAAATRAEAPPAapAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPAS 482

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 111184745 142 D-----------PAVAPTSAASRKPDPAVAPtSAASRKPDPAAN 174
Cdd:PRK07003 483 DappdaafepapRAAAPSAATPAAVPDARAP-AAASREDAPAAA 525

PRK07003

DNA polymerase III subunit gamma/tau;

64-173

1.24e-09

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 61.40 E-value: 1.24e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAV--APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKP 141
Cdd:PRK07003 389 AAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAapAPPATADRGDDAADGDAPVPAKANARASADSRCDERDA 468

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 111184745 142 DPAVAPTSAASRKPD-----------PAVAPTSAASRKPDPAA 173
Cdd:PRK07003 469 QPPADSGSASAPASDappdaafepapRAAAPSAATPAAVPDAR 511

PRK07764

DNA polymerase III subunits gamma and tau; Validated

64-181

2.75e-09

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 60.00 E-value: 2.75e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  64 TSAATRKPDPAVAPTSAATRKPDPA-VAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASrKPD 142
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPApAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP-SAQ 465

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 111184745 143 PAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK07764 466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504

PRK07003

DNA polymerase III subunit gamma/tau;

66-173

3.73e-09

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 59.86 E-value: 3.73e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAV--APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD-----------PAVA 132
Cdd:PRK07003 419 AATRAEAPPAapAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDappdaafepapRAAA 498

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 111184745 133 PTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PRK07003 499 PSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAA 539

PRK07003

DNA polymerase III subunit gamma/tau;

73-181

5.54e-09

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 59.09 E-value: 5.54e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  73 PAVAPTSAATRKPDP-AVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKP--DPAVAPTS 149
Cdd:PRK07003 369 GGGVPARVAGAVPAPgARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRgdDAADGDAP 448

                         90       100       110
                 ....*....|....*....|....*....|..
gi 111184745 150 AASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK07003 449 VPAKANARASADSRCDERDAQPPADSGSASAP 480

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

98-180

6.67e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 59.13 E-value: 6.67e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   98 KPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQH 177
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116


                  ...
gi 111184745  178 SQP 180
Cdd:PRK12270  117 VTP 119

PRK07003

DNA polymerase III subunit gamma/tau;

52-173

6.76e-09

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 58.71 E-value: 6.76e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  52 SQPTPVSITELYTSAATRK---PDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD 128
Cdd:PRK07003 428 AAPAPPATADRGDDAADGDapvPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAV 507

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 111184745 129 PAVAPTSAASRKPDPAvAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PRK07003 508 PDARAPAAASREDAPA-AAAPPAPEARPPTPAAAAPAARAGGAAA 551

PRK07764

DNA polymerase III subunits gamma and tau; Validated

65-176

7.41e-09

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 58.84 E-value: 7.41e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPTSAATR-KPDPAVAPTSAATRKPDPAVAPTSAATRKPDPA-----VAPTSAATRKPDPAVAPTSAAS 138
Cdd:PRK07764 394 PAAAAPSAAAAAPAAAPAPaAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGnapagGAPSPPPAAAPSAQPAPAPAAA 473

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 111184745 139 RKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQ 176
Cdd:PRK07764 474 PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

PHA03247

large tegument protein UL36; Provisional

49-181

1.19e-08

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.41 E-value: 1.19e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   49 STESQPTPVSITELYTSAATRKPDPAVAPTSAATRK----PDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAAT 124
Cdd:PHA03247 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESlpspWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP 2841

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111184745  125 RKPDP--------AVAPTSAASRKPDP-AVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2842 PPGPPppslplggSVAPGGDVRRRPPSrSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPER 2907

PHA03247

large tegument protein UL36; Provisional

55-181

1.48e-08

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.03 E-value: 1.48e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   55 TPVSITELYTSAATRKPD----PAVAPTSAATRKPDPAVAPTSAATRK----PDPAVAPTSAATRKPDPAVAPTSAATRK 126
Cdd:PHA03247 2750 TPGGPARPARPPTTAGPPapapPAAPAAGPPRRLTRPAVASLSESRESlpspWDPADPPAAVLAPAAALPPAASPAGPLP 2829

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111184745  127 PDPAVAPTSAASRKPDP--------AVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2830 PPTSAQPTAPPPPPGPPppslplggSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVS 2892

PRK07764

DNA polymerase III subunits gamma and tau; Validated

64-173

1.78e-08

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 57.69 E-value: 1.78e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSA-ATRKPDPAVAPTSAATRKP-DPAVAPTSAATRKPDPAVAPTSAASRKP 141
Cdd:PRK07764 399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPqPAPAPAPAPAPPSPAGNAPaGGAPSPPPAAAPSAQPAPAPAAAPEPTA 478

                         90       100       110
                 ....*....|....*....|....*....|..
gi 111184745 142 DPAVAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PRK07764 479 APAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

70-167

2.14e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 57.59 E-value: 2.14e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   70 KPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKP-DPAVAPT 148
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPaAAAVEDE 116

                          90
                  ....*....|....*....
gi 111184745  149 SAASRKPDPAVAPTSAASR 167
Cdd:PRK12270  117 VTPLRGAAAAVAKNMDASL 135

PRK12323

DNA polymerase III subunit gamma/tau;

51-181

2.65e-08

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 56.81 E-value: 2.65e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  51 ESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAA----TRKPDPAVAPTSAATRKPDPAVAPTSAATRk 126
Cdd:PRK12323 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAArqasARGPGGAPAPAPAPAAAPAAAARPAAAGPR- 470

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111184745 127 PDPAVAPTSAASRKPDPAVAPT---------------SAASRKPDPAVAPTSAAS------RKPDPAANTQHSQPP 181
Cdd:PRK12323 471 PVAAAAAAAPARAAPAAAPAPAdddpppweelppefaSPAPAQPDAAPAGWVAESipdpatADPDDAFETLAPAPA 546

PHA03247

large tegument protein UL36; Provisional

54-181

2.66e-08

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 2.66e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   54 PTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDP--------AVAPTSAATR 125
Cdd:PHA03247 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPppslplggSVAPGGDVRR 2864

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 111184745  126 KPDP-AVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2865 RPPSrSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQP 2921

PHA03247

large tegument protein UL36; Provisional

51-181

2.75e-08

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.26 E-value: 2.75e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   51 ESQPTP-VSITELYT-SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD 128
Cdd:PHA03247 2709 EPAPHAlVSATPLPPgPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 111184745  129 PAVAPTSAASRKPdPAVAPTSAASRKPDPAVAPTSA-ASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2789 ASLSESRESLPSP-WDPADPPAAVLAPAAALPPAASpAGPLPPPTSAQPTAPPP 2841

PTZ00436

60S ribosomal protein L19-like protein; Provisional

64-181

2.80e-08

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 56.11 E-value: 2.80e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDP 143
Cdd:PTZ00436 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 295

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 111184745 144 AVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PTZ00436 296 AAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATP 333

PTZ00436

60S ribosomal protein L19-like protein; Provisional

66-166

3.32e-08

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 55.73 E-value: 3.32e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAV 145
Cdd:PTZ00436 246 AAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAA 325

                         90       100
                 ....*....|....*....|.
gi 111184745 146 APTSAASRKPDPAVAPTSAAS 166
Cdd:PTZ00436 326 PPAKAATPPAKAAAPPAKAAA 346

PTZ00436

60S ribosomal protein L19-like protein; Provisional

66-173

3.50e-08

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 55.73 E-value: 3.50e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAV 145
Cdd:PTZ00436 232 AAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAA 311

                         90       100
                 ....*....|....*....|....*...
gi 111184745 146 APTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PTZ00436 312 APAKAAAPPAKAAAPPAKAATPPAKAAA 339

PTZ00436

60S ribosomal protein L19-like protein; Provisional

69-181

4.52e-08

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 55.34 E-value: 4.52e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  69 RKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPT 148
Cdd:PTZ00436 214 KKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 293

                         90       100       110
                 ....*....|....*....|....*....|...
gi 111184745 149 SAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PTZ00436 294 KAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP 326

PHA03378

EBNA-3B; Provisional

50-180

5.27e-08

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 56.23 E-value: 5.27e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  50 TESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRK--PDPAVAPTSAATRKPDPAVAPTSAatRKP 127
Cdd:PHA03378 660 TPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAapPGRAQRPAAATGRARPPAAAPGRA--RPP 737

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 111184745 128 DPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQP 180
Cdd:PHA03378 738 AAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP 790

PTZ00436

60S ribosomal protein L19-like protein; Provisional

66-173

7.97e-08

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 54.57 E-value: 7.97e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAV 145
Cdd:PTZ00436 239 AAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAA 318

                         90       100
                 ....*....|....*....|....*...
gi 111184745 146 APTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PTZ00436 319 PPAKAAAPPAKAATPPAKAAAPPAKAAA 346

PHA03378

EBNA-3B; Provisional

66-196

8.02e-08

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 55.46 E-value: 8.02e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPT------SAATRKPDPAVAPTSA--ATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDP-AVAPTSA 136
Cdd:PHA03378 700 APTPMRPPAAPPGraqrpaAATGRARPPAAAPGRArpPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPgAPTPQPP 779

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 137 ASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAAntqhSQPPFLYENIQCVHGGIQS 196
Cdd:PHA03378 780 PQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG----QQGPTKQILRQLLTGGVKR 835

PHA03378

EBNA-3B; Provisional

53-181

8.23e-08

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 55.46 E-value: 8.23e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  53 QPTPVSI-TELYTSAAtrkPDPAVAPTSAATRKPDPAVAPTSA--ATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDP 129
Cdd:PHA03378 675 QPSPTGAnTMLPIQWA---PGTMQPPPRAPTPMRPPAAPPGRAqrPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAP 751

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 111184745 130 AVA--PTSAASRKPDPAVAPtSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03378 752 GRArpPAAAPGRARPPAAAP-GAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGP 804

PHA03247

large tegument protein UL36; Provisional

64-175

8.64e-08

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 8.64e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRK----PDPAVAPTSAASR 139
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESlpspWDPADPPAAVLAP 2814

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 111184745  140 KPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANT 175
Cdd:PHA03247 2815 AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL 2850

PHA03247

large tegument protein UL36; Provisional

65-181

8.94e-08

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 8.94e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   65 SAATRKPD-----PAVAPTSAATRKPD----PAVAPTSAATRKPDPAVA--------PTSAATRKPDPAVAPTSAATRKP 127
Cdd:PHA03247 2677 SSPPQRPRrraarPTVGSLTSLADPPPppptPEPAPHALVSATPLPPGPaaarqaspALPAAPAPPAVPAGPATPGGPAR 2756

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 111184745  128 DPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRK----PDPAANTQHSQPP 181
Cdd:PHA03247 2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESlpspWDPADPPAAVLAP 2814

PHA03378

EBNA-3B; Provisional

50-180

9.36e-08

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 55.46 E-value: 9.36e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  50 TESQPTPVSITELYTSAATRKPDPA-VAPTSAATRKPdPAVAPTSAAT--RKPDPAVAPTSAatrkPDPAVAPTSAATRK 126
Cdd:PHA03378 650 TPHQPPQVEITPYKPTWTQIGHIPYqPSPTGANTMLP-IQWAPGTMQPppRAPTPMRPPAAP----PGRAQRPAAATGRA 724

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 111184745 127 PDPAVAPTSA--ASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQP 180
Cdd:PHA03378 725 RPPAAAPGRArpPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPP 780

PRK07764

DNA polymerase III subunits gamma and tau; Validated

49-182

9.53e-08

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.99 E-value: 9.53e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  49 STESQPTPVSITElyTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD 128
Cdd:PRK07764 610 EEAARPAAPAAPA--APAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP 687

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 111184745 129 PA-VAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPPF 182
Cdd:PRK07764 688 AApAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

64-173

1.03e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 54.72 E-value: 1.03e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPdPAVAPTSAATRKPDPAVAPTSAASRKPDP 143
Cdd:PRK14951 380 TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP-AAAAPAAAPAAAPAAVALAPAPPAQAAPE 458

                         90       100       110
                 ....*....|....*....|....*....|
gi 111184745 144 AVAPTSAASRKPDPAVAPTSAASRkPDPAA 173
Cdd:PRK14951 459 TVAIPVRVAPEPAVASAAPAPAAA-PAAAR 487

PRK12323

DNA polymerase III subunit gamma/tau;

66-181

1.08e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 54.88 E-value: 1.08e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATRKPDPAVAPTSAATRkPDPAVAPTSAATRKPDPAVAPT---------------SAATRKPDPA 130
Cdd:PRK12323 439 ASARGPGGAPAPAPAPAAAPAAAARPAAAGPR-PVAAAAAAAPARAAPAAAPAPAdddpppweelppefaSPAPAQPDAA 517

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 111184745 131 VAPTSAASrKPDPAVAPTSAAsrKPDPAVAPTSAASrkPDPAANTQHSQPP 181
Cdd:PRK12323 518 PAGWVAES-IPDPATADPDDA--FETLAPAPAAAPA--PRAAAATEPVVAP 563

PRK07764

DNA polymerase III subunits gamma and tau; Validated

76-181

2.05e-07

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.22 E-value: 2.05e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  76 APTSAATRKPDPAVAPTSAATRKPDPA-VAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASrK 154
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAAPApAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP-S 463

                         90       100
                 ....*....|....*....|....*..
gi 111184745 155 PDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK07764 464 AQPAPAPAAAPEPTAAPAPAPPAAPAP 490

PHA03247

large tegument protein UL36; Provisional

71-181

2.32e-07

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.17 E-value: 2.32e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   71 PDPAVAPTSAATRKPDPAVapTSAATRkpdPAVAPTSAATRKP---------DPAVAPTSAATRKPD-PAVAPTSAASRK 140
Cdd:PHA03247 2564 PDRSVPPPRPAPRPSEPAV--TSRARR---PDAPPQSARPRAPvddrgdprgPAPPSPLPPDTHAPDpPPPSPSPAANEP 2638

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 111184745  141 PDPAVAPTSAASR-KPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2639 DPHPPPTVPPPERpRDDPAPGRVSRPRRARRLGRAAQASSPP 2680

PRK07003

DNA polymerase III subunit gamma/tau;

72-181

2.59e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 53.70 E-value: 2.59e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  72 DPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPT--SAASRKPDPAVAPTS 149
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATraEAPPAAPAPPATADR 438

                         90       100       110
                 ....*....|....*....|....*....|...
gi 111184745 150 AASRKPDPAVAPTSAASR-KPDPAANTQHSQPP 181
Cdd:PRK07003 439 GDDAADGDAPVPAKANARaSADSRCDERDAQPP 471

PHA03247

large tegument protein UL36; Provisional

54-181

3.49e-07

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.79 E-value: 3.49e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   54 PTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRK----PDPAVAPTSAATRKPDP 129
Cdd:PHA03247 2739 PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESlpspWDPADPPAAVLAPAAAL 2818

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111184745  130 AVAPTSAASRKPDPAVAPTSAASRKPDP--------AVAPTSAASRKPD----PAANTQHSQPP 181
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPppslplggSVAPGGDVRRRPPsrspAAKPAAPARPP 2882

PHA03247

large tegument protein UL36; Provisional

52-181

3.52e-07

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.79 E-value: 3.52e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   52 SQPTPVSITELYTSAATRkpdPAVAPTSAATRKP---------DPAVAPTSAATRKPD-PAVAPTSAATRKPDPAVAPTS 121
Cdd:PHA03247 2571 PRPAPRPSEPAVTSRARR---PDAPPQSARPRAPvddrgdprgPAPPSPLPPDTHAPDpPPPSPSPAANEPDPHPPPTVP 2647

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111184745  122 AATRkPDPAVAP--------TSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2648 PPER-PRDDPAPgrvsrprrARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHA 2714

PTZ00436

60S ribosomal protein L19-like protein; Provisional

66-161

3.85e-07

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 52.64 E-value: 3.85e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAV 145
Cdd:PTZ00436 253 AAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAT 332

                         90
                 ....*....|....*.
gi 111184745 146 APTSAASRKPDPAVAP 161
Cdd:PTZ00436 333 PPAKAAAPPAKAAAAP 348

PTZ00436

60S ribosomal protein L19-like protein; Provisional

65-181

4.32e-07

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 52.26 E-value: 4.32e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPA 144
Cdd:PTZ00436 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAA 282

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 111184745 145 VAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PTZ00436 283 APPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAP 319

PHA03247

large tegument protein UL36; Provisional

43-181

4.55e-07

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.40 E-value: 4.55e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   43 IACIQLSTESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDP--------AVAPTSAATRKPD 114
Cdd:PHA03247 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPppslplggSVAPGGDVRRRPP 2867

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111184745  115 PAVAPTSAATRKPDPAVA-PTSAASRKPDPAVAPTSAASRKPDPAvAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRlARPAVSRSTESFALPPDQPERPPQPQ-APPPPQPQPQPPPPPQPQPPPP 2934

PHA03247

large tegument protein UL36; Provisional

71-181

5.35e-07

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.02 E-value: 5.35e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   71 PDPAVAPTSAatrkPDPAVAPTSAATRKPDPAVapTSAATRkpdPAVAPTSAATRKP----DPAVAPTSAASRKPDPAVA 146
Cdd:PHA03247 2554 PLPPAAPPAA----PDRSVPPPRPAPRPSEPAV--TSRARR---PDAPPQSARPRAPvddrGDPRGPAPPSPLPPDTHAP 2624

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 111184745  147 PTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2625 DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPG 2659

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

61-169

5.39e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 52.50 E-value: 5.39e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  61 ELYTSAATRKPDPAVAPTSaatrkpdPAVAPTSAATRKPDPAVAPTSAATRKPDPavAPTSAATRKPDPAVAPTSAASRK 140
Cdd:PRK14950 352 ELAVIEALLVPVPAPQPAK-------PTAAAPSPVRPTPAPSTRPKAAAAANIPP--KEPVRETATPPPVPPRPVAPPVP 422

                         90       100
                 ....*....|....*....|....*....
gi 111184745 141 PDPAVAPTSAASRKPDPaVAPTSAASRKP 169
Cdd:PRK14950 423 HTPESAPKLTRAAIPVD-EKPKYTPPAPP 450

PRK07764

DNA polymerase III subunits gamma and tau; Validated

49-161

5.40e-07

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 52.68 E-value: 5.40e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  49 STESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrKPDPAVAPTSAATRKPD 128
Cdd:PRK07764 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP-SAQPAPAPAAAPEPTAA 479

                         90       100       110
                 ....*....|....*....|....*....|...
gi 111184745 129 PAVAPTSAASRKPDPAVAPTSAASRKPDPAVAP 161
Cdd:PRK07764 480 PAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512

PTZ00436

60S ribosomal protein L19-like protein; Provisional

65-173

5.43e-07

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 51.87 E-value: 5.43e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPA 144
Cdd:PTZ00436 196 AAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275

                         90       100
                 ....*....|....*....|....*....
gi 111184745 145 VAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PTZ00436 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAA 304

PRK07994

DNA polymerase III subunits gamma and tau; Validated

51-173

6.75e-07

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.18 E-value: 6.75e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  51 ESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrkPDPAVAPTSAATRKPDPA 130
Cdd:PRK07994 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR--QQLQRAQGATKAKKSEPA 444

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 111184745 131 VAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PRK07994 445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPV 487

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

59-169

9.34e-07

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 51.50 E-value: 9.34e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   59 ITELYTSAATRKPDPAV---APTSAATRKPDPAVA--PTSAATRKPDPAVAPTSAATRKPDPAV--APTSAATRKPDPAV 131
Cdd:pfam17823  86 VTAEHTPHGTDLSEPATregAADGAASRALAAAASssPSSAAQSLPAAIAALPSEAFSAPRAAAcrANASAAPRAAIAAA 165

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 111184745  132 APTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKP 169
Cdd:pfam17823 166 SAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAP 203

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

81-181

9.45e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 51.73 E-value: 9.45e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  81 ATRKPDPAVAPTSaatrkpdPAVAPTSAATRKPDPAVAPTSAATRKPDPavAPTSAASRKPDPAVAPTSAASRKPDPAVA 160
Cdd:PRK14950 358 ALLVPVPAPQPAK-------PTAAAPSPVRPTPAPSTRPKAAAAANIPP--KEPVRETATPPPVPPRPVAPPVPHTPESA 428

                         90       100
                 ....*....|....*....|.
gi 111184745 161 PTSAASRKPDPAANTQHSQPP 181
Cdd:PRK14950 429 PKLTRAAIPVDEKPKYTPPAP 449

PRK07003

DNA polymerase III subunit gamma/tau;

49-181

1.18e-06

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 51.77 E-value: 1.18e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  49 STESQPTPVSITELYTSAATRKPDPAVA-PTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRkP 127
Cdd:PRK07003 441 DAADGDAPVPAKANARASADSRCDERDAqPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR-E 519

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111184745 128 DPAVAPTSAASRKPDPAVAPTSAASRKPDPAVA----------PTSAASRKPDPAANTQHSQPP 181
Cdd:PRK07003 520 DAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvlrnagmrVSSDRGARAAAAAKPAAAPAA 583

PRK12323

DNA polymerase III subunit gamma/tau;

51-173

1.19e-06

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.42 E-value: 1.19e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  51 ESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKP---DPAVAPTSAATRKPDPAVAPTSAATrKP 127
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweELPPEFASPAPAQPDAAPAGWVAES-IP 527

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 111184745 128 DPAVAPTSAAsrKPDPAVAPTSAASRKPDPAVAPTSAAsRKPDPAA 173
Cdd:PRK12323 528 DPATADPDDA--FETLAPAPAAAPAPRAAAATEPVVAP-RPPRASA 570

PRK07994

DNA polymerase III subunits gamma and tau; Validated

65-181

1.23e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 51.40 E-value: 1.23e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPA 144
Cdd:PRK07994 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA 446

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 111184745 145 VAPTSAAS---RKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK07994 447 SRARPVNSaleRLASVRPAPSALEKAPAKKEAYRWKATNP 486

DamX

COG3266

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...

33-152

1.61e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 51.00 E-value: 1.61e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  33 KRIQINLILTIACIQLSTESQ----PTPVSITELYTSAATRKPDPAVAPTSAATRKPD----PAVAPTSAATRKPDPAVA 104
Cdd:COG3266  240 LTARLVLLLLIIGSALKAPSQassaSAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSavalPAAPAAAAAAAAPAEAAA 319

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 111184745 105 PTSAATRkpdPAVAPTSAATrKPDPAVAPTSAASRKPDPAVAPTSAAS 152
Cdd:COG3266  320 PQPTAAK---PVVTETAAPA-APAPEAAAAAAAPAAPAVAKKLAADEQ 363

PRK07994

DNA polymerase III subunits gamma and tau; Validated

73-181

1.70e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 51.02 E-value: 1.70e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  73 PAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAAS 152
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110
                 ....*....|....*....|....*....|..
gi 111184745 153 RKPDPAVAPTSAAS---RKPDPAANTQHSQPP 181
Cdd:PRK07994 441 SEPAAASRARPVNSaleRLASVRPAPSALEKA 472

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

55-175

1.73e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 50.73 E-value: 1.73e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   55 TPVSITElyTSAATRKPDPAVAPTSAATRKPDPAV--APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVA 132
Cdd:pfam17823 117 AAASSSP--SSAAQSLPAAIAALPSEAFSAPRAAAcrANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSA 194

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 111184745  133 PTSAASRKPD---PAVAPTSAASRKPDPAVAPTSAASRKPDPAANT 175
Cdd:pfam17823 195 PTTAASSAPAtltPARGISTAATATGHPAAGTALAAVGNSSPAAGT 240

rad23

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

57-136

1.81e-06

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 50.28 E-value: 1.81e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   57 VSITELYTSAATRKPdPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrKPDPAVAPTSAATRKPDPAVAPTSA 136
Cdd:TIGR00601  72 VMVSKPKTGTGKVAP-PAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSE-ESATATAPESPSTSVPSSGSDAAST 149

Herpes_BLLF1

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

52-175

1.89e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 51.07 E-value: 1.89e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   52 SQPTPVSITelyTSAATRKPDPAVAPTSAATRKPDpAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAV 131
Cdd:pfam05109 474 TSPTPAGTT---SGASPVTPSPSPRDNGTESKAPD-MTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVT 549

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 111184745  132 APTSAASrKPDPAV-APTSAASRKPDPAVAPTSAASrKPDPAANT 175
Cdd:pfam05109 550 TPTPNAT-SPTPAVtTPTPNATIPTLGKTSPTSAVT-TPTPNATS 592

PRK14971

DNA polymerase III subunit gamma/tau;

1-188

1.93e-06

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 50.93 E-value: 1.93e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   1 MSKKTFPSFKFRGgcfnLLFKGSVDVSIK-TRMKRIQINLILtIACIQLSTE----------SQPTPVSITElytSAATR 69
Cdd:PRK14971 319 QAQKCPMSFLYRA----LKLCNQCDLNYRaSKNKRLLVELTL-IQLAQLTQKgddasggrgpKQHIKPVFTQ---PAAAP 390

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  70 KP----DPAVAPTSAATrkPDPAVAPTSAATrkpdPAVAPTSAATRKPDPA-VAPTSAATrkpdPAVAPTSAASRKPdPA 144
Cdd:PRK14971 391 QPsaaaAASPSPSQSSA--AAQPSAPQSATQ----PAGTPPTVSVDPPAAVpVNPPSTAP----QAVRPAQFKEEKK-IP 459

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 111184745 145 VAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPPFLYENIQ 188
Cdd:PRK14971 460 VSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQKEIFTEEDLQ 503

rad23

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

77-150

2.30e-06

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 50.28 E-value: 2.30e-06

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111184745   77 PTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrKPDPAVAPTSAASRKPDPAVAPTSA 150
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSE-ESATATAPESPSTSVPSSGSDAAST 149

PRK14959

DNA polymerase III subunits gamma and tau; Provisional

65-178

2.57e-06

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 50.45 E-value: 2.57e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPTSAATRKPDPAVAPTSAAtrkPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPA 144
Cdd:PRK14959 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTA---PAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPR 455

                         90       100       110
                 ....*....|....*....|....*....|....
gi 111184745 145 VAPTSAASRKPDPAVAPTSAASRKPDPAANTQHS 178
Cdd:PRK14959 456 MPEASPVPGAPDSVASASDAPPTLGDPSDTAEHT 489

PTZ00436

60S ribosomal protein L19-like protein; Provisional

65-169

3.01e-06

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 49.56 E-value: 3.01e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKP-----DPAVAPTSAASR 139
Cdd:PTZ00436 237 AKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPakaaaAPAKAAAAPAKA 316

                         90       100       110
                 ....*....|....*....|....*....|..
gi 111184745 140 KPDPA--VAPTSAASRKPDPAVAPTSAASRKP 169
Cdd:PTZ00436 317 AAPPAkaAAPPAKAATPPAKAAAPPAKAAAAP 348

flhF

PRK06995

flagellar biosynthesis protein FlhF;

74-176

3.64e-06

flagellar biosynthesis protein FlhF;

Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 49.58 E-value: 3.64e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  74 AVAPTSAATRKP--DPAVAPTSAATRKPDPAVAPTSA----ATRKPDPAVAPT--SAATRKPDPAVAPTSAASRKPDPAV 145
Cdd:PRK06995  50 ALAPPAAAAPAAaqPPPAAAPAAVSRPAAPAAEPAPWlvehAKRLTAQREQLVarAAAPAAPEAQAPAAPAERAAAENAA 129

                         90       100       110
                 ....*....|....*....|....*....|.
gi 111184745 146 APTSAASRKPdPAVAPTSAASRKPDPAANTQ 176
Cdd:PRK06995 130 RRLARAAAAA-PRPRVPADAAAAVADAVKAR 159

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

64-153

3.72e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 50.27 E-value: 3.72e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKP-DPAVAPTSAASRKPD 142
Cdd:PRK12270   45 TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPaAAAVEDEVTPLRGAA 124

                          90
                  ....*....|.
gi 111184745  143 PAVAPTSAASR 153
Cdd:PRK12270  125 AAVAKNMDASL 135

PHA02682

ORF080 virion core protein; Provisional

27-170

3.82e-06

ORF080 virion core protein; Provisional

Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 48.70 E-value: 3.82e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  27 SIKTRMKRIQINLILTIACIQLSTESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPdPAVAPT 106
Cdd:PHA02682  54 SVKEAGRYYQSRLKANSACMQRPSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPP-PAVCPA 132

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111184745 107 SAatrKPDPAVAPTSAA--------TRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTsAASRKPD 170
Cdd:PHA02682 133 PA---RPAPACPPSTRQcppapplpTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPV-LEPRIPD 200

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

50-157

4.05e-06

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 49.71 E-value: 4.05e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  50 TESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPtsAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDP 129
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAA--PAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464

                         90       100
                 ....*....|....*....|....*...
gi 111184745 130 AVAPTSAASRKPDPAVAPTSAASRKPDP 157
Cdd:PRK14951 465 RVAPEPAVASAAPAPAAAPAAARLTPTE 492

PHA03247

large tegument protein UL36; Provisional

52-181

4.46e-06

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.94 E-value: 4.46e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   52 SQPTPVSitelytSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD----PAVAPTSAATRKPDPAVAptSAATRKP 127
Cdd:PHA03247 2612 APPSPLP------PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDdpapGRVSRPRRARRLGRAAQA--SSPPQRP 2683

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 111184745  128 D-----PAVAPTSAASRKPDPavaptsaaSRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2684 RrraarPTVGSLTSLADPPPP--------PPTPEPAPHALVSATPLPPGPAAARQASPA 2734

PRK12373

NADH-quinone oxidoreductase subunit E;

48-165

4.77e-06

NADH-quinone oxidoreductase subunit E;

Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 49.03 E-value: 4.77e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  48 LSTESQPTPVSI-TELYT--SAATRKPDPAVAPTSAATRKPDPAVAPTSAAtrKPDPAVAPTSAATRKPDPA-VAPTSAA 123
Cdd:PRK12373 197 LTEEAGKARYNAsKALAEdiGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAA--RPKSADAETNAALKTPATApKAAAKNA 274

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 111184745 124 TRKPDPAVAPTSAASRKPDPAVAPTSAASR-----KPDPAVAPTSAA 165
Cdd:PRK12373 275 KAPEAQPVSGTAAAEPAPKEAAKAAAAAAKpaledKPRPLGIARPGG 321

PHA03247

large tegument protein UL36; Provisional

64-173

4.78e-06

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.94 E-value: 4.78e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD----PAVAPTSAATRKPDPAVA--------PTSAATRKPDPAV 131
Cdd:PHA03247 2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPppptPEPAPHALVSATPLPPGPaaarqaspALPAAPAPPAVPA 2746

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 111184745  132 APTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PHA03247 2747 GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

PRK12373

NADH-quinone oxidoreductase subunit E;

56-180

4.94e-06

NADH-quinone oxidoreductase subunit E;

Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 49.03 E-value: 4.94e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  56 PVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAAtrKPDPAVAPTSAATRKPDPavAPTS 135
Cdd:PRK12373 194 LTSLTEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAA--RPKSADAETNAALKTPAT--APKA 269

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 111184745 136 AASRKPDPAVAPTSAAsrkPDPAVAPTSAASRKPDPAANTQHSQP 180
Cdd:PRK12373 270 AAKNAKAPEAQPVSGT---AAAEPAPKEAAKAAAAAAKPALEDKP 311

PRK10856

cytoskeleton protein RodZ;

47-152

5.27e-06

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 48.87 E-value: 5.27e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  47 QLS-TESQPTPVSITElyTSAATRKPDPAVAPTSAATRKPDPAVAPTSAatrkpdPAVAPTSAATRKPDPAvAPTSAATR 125
Cdd:PRK10856 153 ELSqNSGQSVPLDTST--TTDPATTPAPAAPVDTTPTNSQTPAVATAPA------PAVDPQQNAVVAPSQA-NVDTAATP 223

                         90       100
                 ....*....|....*....|....*..
gi 111184745 126 KPDPAVAPTSAASRKPDPAVAPTSAAS 152
Cdd:PRK10856 224 APAAPATPDGAAPLPTDQAGVSTPAAD 250

rad23

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

91-164

5.39e-06

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 48.74 E-value: 5.39e-06

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111184745   91 PTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASrKPDPAVAPTSAASRKPDPAVAPTSA 164
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSE-ESATATAPESPSTSVPSSGSDAAST 149

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

49-173

5.97e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 49.19 E-value: 5.97e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   49 STESQPTPVSITELyTSAATRKPDPAV--APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRK 126
Cdd:pfam17823 124 SSAAQSLPAAIAAL-PSEAFSAPRAAAcrANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSA 202

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 111184745  127 PD---PAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:pfam17823 203 PAtltPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAA 252

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

112-181

6.01e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 49.50 E-value: 6.01e-06

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  112 KPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106

PRK12373

NADH-quinone oxidoreductase subunit E;

73-179

6.26e-06

NADH-quinone oxidoreductase subunit E;

Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 48.64 E-value: 6.26e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  73 PAVAPTSAATRKP------DPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRkPDPAVAPTSAASRKPDPA-V 145
Cdd:PRK12373 190 PAGGLTSLTEEAGkarynaSKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAAR-PKSADAETNAALKTPATApK 268

                         90       100       110
                 ....*....|....*....|....*....|....
gi 111184745 146 APTSAASRKPDPAVAPTSAASRKPDPAANTQHSQ 179
Cdd:PRK12373 269 AAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAA 302

PHA03307

transcriptional regulator ICP4; Provisional

54-172

6.38e-06

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 49.40 E-value: 6.38e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   54 PTPVSITELYTSAAT---RKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPA 130
Cdd:PHA03307  260 PAPITLPTRIWEASGwngPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA 339

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 111184745  131 VAPTSA-----ASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPA 172
Cdd:PHA03307  340 AVSPGPspsrsPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPT 386

rad23

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

105-178

6.89e-06

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 48.74 E-value: 6.89e-06

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 111184745  105 PTSAATRKPDPAVAPTSAATRKPDPAVAPTsaasrkPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHS 178
Cdd:TIGR00601  77 PKTGTGKVAPPAATPTSAPTPTPSPPASPA------SGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGS 144

PHA03247

large tegument protein UL36; Provisional

48-181

7.43e-06

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.17 E-value: 7.43e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   48 LSTESQPT---PVSITELytsAATRKPDPAVAPTSAATRKPDPAVAPTSAAT--------RKPDPAVAPTSAATrkPDPA 116
Cdd:PHA03247  351 FPKRRRPTwtpPSSLEDL---SAGRHHPKRASLPTRKRRSARHAATPFARGPggddqtrpAAPVPASVPTPAPT--PVPA 425

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 111184745  117 VAPTSAATrkPDPAVAPTSAASRKPDPAVAPTSAASrkpDPAVAPTSAASRKPDPAANTQHS-QPP 181
Cdd:PHA03247  426 SAPPPPAT--PLPSAEPGSDDGPAPPPERQPPAPAT---EPAPDDPDDATRKALDALRERRPpEPP 486

PHA03378

EBNA-3B; Provisional

69-181

8.41e-06

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.91 E-value: 8.41e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  69 RKPD--PAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPtsaaTRKPDPAVAPTSAasRKPDPAVA 146
Cdd:PHA03378 649 PTPHqpPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAP----TPMRPPAAPPGRA--QRPAAATG 722

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 111184745 147 PTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03378 723 RARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP 757

PTZ00436

60S ribosomal protein L19-like protein; Provisional

69-173

9.61e-06

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 48.02 E-value: 9.61e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  69 RKPDPAVAPTSAATRKPDPAVAPTSAATRKpdpAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPT 148
Cdd:PTZ00436 189 RREDAAAAAAAKQKAAAKKAAAPSGKKSAK---AAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPA 265

                         90       100
                 ....*....|....*....|....*
gi 111184745 149 SAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PTZ00436 266 KAAAPPAKAAAPPAKAAAPPAKAAA 290

PRK07764

DNA polymerase III subunits gamma and tau; Validated

49-173

9.66e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.83 E-value: 9.66e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  49 STESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPA--VAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAAT-- 124
Cdd:PRK07764 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAapAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQga 728

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 111184745 125 ----RKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PRK07764 729 sapsPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

64-153

1.16e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.73 E-value: 1.16e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPtsaatrKPDPAVAPTSAATRKPDPAVAPTSAASRKPDP 143
Cdd:PRK12270   43 APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP------KPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116

                          90
                  ....*....|
gi 111184745  144 AVAPTSAASR 153
Cdd:PRK12270  117 VTPLRGAAAA 126

PHA01929

putative scaffolding protein

72-172

1.31e-05

putative scaffolding protein

Pssm-ID: 177328 Cd Length: 306 Bit Score: 47.36 E-value: 1.31e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  72 DPAVAPTSAATRKPDPAVAPTSAATrkPDPAVAPTSAATRKPDPAVAPTSAATrkpdPAVAPTSAASrkPDPAVAPTsaa 151
Cdd:PHA01929  16 VANVPPAAAPTPQPNPVIQPQAPVQ--PGQPGAPQQLAIPTQQPQPVPTSAMT----PHVVQQAPAQ--PAPAAPPA--- 84

                         90       100
                 ....*....|....*....|.
gi 111184745 152 srkpdPAVAPTSAASRKPDPA 172
Cdd:PHA01929  85 -----AGAALPEALEVPPPPA 100

PHA03307

transcriptional regulator ICP4; Provisional

71-181

1.41e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.24 E-value: 1.41e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   71 PDPAVAPTSAATRKPDPAVAPTSAATRKPDPAV--APTSAATRKPDPAVA---PTSAATRKPDPAVAP---TSAASRKPD 142
Cdd:PHA03307  126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASpaAVASDAASSRQAALPlssPEETARAPSSPPAEPppsTPPAAASPR 205

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 111184745  143 PAVAPTSAASRKPDPAVAPT-SAASRKPDPAANTQHSQPP 181
Cdd:PHA03307  206 PPRRSSPISASASSPAPAPGrSAADDAGASSSDSSSSESS 245

PHA03247

large tegument protein UL36; Provisional

64-171

1.48e-05

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 48.40 E-value: 1.48e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   64 TSAATRKPDPAVAPTSAATRKPDP--------AVAPTSAATRKPDPAVAPTSAAT-------RKPDPAVAPTS------- 121
Cdd:PHA03247 2823 SPAGPLPPPTSAQPTAPPPPPGPPppslplggSVAPGGDVRRRPPSRSPAAKPAAparppvrRLARPAVSRSTesfalpp 2902

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 111184745  122 ---AATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDP 171
Cdd:PHA03247 2903 dqpERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955

PRK10819

transport protein TonB; Provisional

46-181

2.10e-05

transport protein TonB; Provisional

Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 46.21 E-value: 2.10e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  46 IQLSTESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPtsaatrkPDPAVAPTSAATRKPDPAVAPTSAATR 125
Cdd:PRK10819  39 IELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEP-------PKEAPVVIPKPEPKPKPKPKPKPKPVK 111

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 111184745 126 K----PDPAVAPTSAASRKPDPAVAPTSAASRKPDPA-VAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK10819 112 KveeqPKREVKPVEPRPASPFENTAPARPTSSTATAAaSKPVTSVSSGPRALSRNQPQYPA 172

PHA01929

putative scaffolding protein

66-161

2.12e-05

putative scaffolding protein

Pssm-ID: 177328 Cd Length: 306 Bit Score: 46.59 E-value: 2.12e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATrkPDPAVAPTSAATRKPDPAVAPTSAATR--------KPDPAVAPTSAATRKPDPAVAPTSAa 137
Cdd:PHA01929  24 APTPQPNPVIQPQAPVQ--PGQPGAPQQLAIPTQQPQPVPTSAMTPhvvqqapaQPAPAAPPAAGAALPEALEVPPPPA- 100

                         90       100
                 ....*....|....*....|....
gi 111184745 138 sRKPDPAVAPTSAASRKPDPAVAP 161
Cdd:PHA01929 101 -FTPNGEIVGTLAGNLEGDPQLAP 123

PHA03247

large tegument protein UL36; Provisional

54-181

2.21e-05

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 2.21e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   54 PTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPT-----SAATRKPD-----PAVAPTSAATRKPDPAVAP---- 119
Cdd:PHA03247 2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGraaqaSSPPQRPRrraarPTVGSLTSLADPPPPPPTPepap 2712

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111184745  120 ---TSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKP----DPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03247 2713 halVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPggpaRPARPPTTAGPPAPAPPAAPAAGPPR 2781

PspC_subgroup_2

NF033839

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

70-180

2.36e-05

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 47.07 E-value: 2.36e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  70 KPDPAVAPTsaaTRKPDPAVAPTSaatRKPDPAVAPTSaatRKPDPAVAPtsaATRKPDPAVAPTSaasRKPDPAVAPTs 149
Cdd:NF033839 382 TPKPEVKPQ---PEKPKPEVKPQP---EKPKPEVKPQP---EKPKPEVKP---QPEKPKPEVKPQP---EKPKPEVKPQ- 445

                         90       100       110
                 ....*....|....*....|....*....|.
gi 111184745 150 aaSRKPDPAVAPTsaaSRKPDPAANTQHSQP 180
Cdd:NF033839 446 --PEKPKPEVKPQ---PETPKPEVKPQPEKP 471

PRK07764

DNA polymerase III subunits gamma and tau; Validated

36-173

2.40e-05

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 47.29 E-value: 2.40e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  36 QINLILTIACiQLSTESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDP 115
Cdd:PRK07764 577 ELGGDWQVEA-VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 116 AVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTS--AASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PRK07764 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAApaAPAGAAPAQPAPAPAATPPAGQAD 715

PRK10856

cytoskeleton protein RodZ;

85-166

2.42e-05

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 46.56 E-value: 2.42e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  85 PDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSA 164
Cdd:PRK10856 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249


                 ..
gi 111184745 165 AS 166
Cdd:PRK10856 250 DP 251

half-pint

TIGR01645

poly-U binding splicing factor, half-pint family; The proteins represented by this model ...

71-165

3.01e-05

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 46.99 E-value: 3.01e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   71 PDPAVAPTSAATRKPDPAVApTSAATRKPDPAVAPTSAAT---RKPDPAVAPTSAATRKPDPAV--APTSAAsrKPDPAV 145
Cdd:TIGR01645 285 PDALLQPATVSAIPAAAAVA-AAAATAKIMAAEAVAGAAVlgpRAQSPATPSSSLPTDIGNKAVvsSAKKEA--EEVPPL 361

                          90       100
                  ....*....|....*....|
gi 111184745  146 APTSAASRKPDPAVAPTSAA 165
Cdd:TIGR01645 362 PQAAPAVVKPGPMEIPTPVP 381

PHA03307

transcriptional regulator ICP4; Provisional

44-181

3.32e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.09 E-value: 3.32e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   44 ACIQLSTESQPTPVSITELYTSAatRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrkPDPAVAPTSAA 123
Cdd:PHA03307   61 ACDRFEPPTGPPPGPGTEAPANE--SRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAS--PPPSPAPDLSE 136

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111184745  124 TRKPDPAVAPTSAASRKPDPAV--APTSAASRKPDPAVA---PTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03307  137 MLRPVGSPGPPPAASPPAAGASpaAVASDAASSRQAALPlssPEETARAPSSPPAEPPPSTPP 199

PRK14959

DNA polymerase III subunits gamma and tau; Provisional

52-155

4.12e-05

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 46.60 E-value: 4.12e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  52 SQPTPVSI-TELYTSAATRKpdpavaPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDpa 130
Cdd:PRK14959 396 TIPTPGTQgPQGTAPAAGMT------PSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPD-- 467

                         90       100
                 ....*....|....*....|....*
gi 111184745 131 vaPTSAASRKPDPAVAPTSAASRKP 155
Cdd:PRK14959 468 --SVASASDAPPTLGDPSDTAEHTP 490

PHA03307

transcriptional regulator ICP4; Provisional

64-181

4.14e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.70 E-value: 4.14e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   64 TSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrkPDPAVAPTSAATRKPDPAVAP----TSAATRKPDPAVAPTSAASR 139
Cdd:PHA03307   93 STLAPASPAREGSPTPPGPSSPDPPPPTPPPAS--PPPSPAPDLSEMLRPVGSPGPppaaSPPAAGASPAAVASDAASSR 170

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 111184745  140 KPDPAVAPTSAASRKPDPavaPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03307  171 QAALPLSSPEETARAPSS---PPAEPPPSTPPAAASPRPPRR 209

PRK14959

DNA polymerase III subunits gamma and tau; Provisional

79-180

4.19e-05

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 46.60 E-value: 4.19e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  79 SAATRKPDPAVAPTSAATRKPDPAVAPTSAAtrkPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPA 158
Cdd:PRK14959 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTA---PAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPR 455

                         90       100
                 ....*....|....*....|..
gi 111184745 159 VAPTSAASRKPDPAANTQHSQP 180
Cdd:PRK14959 456 MPEASPVPGAPDSVASASDAPP 477

PHA03307

transcriptional regulator ICP4; Provisional

64-181

4.71e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.70 E-value: 4.71e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   64 TSAATRKPDPAVAPTSAATRKPDpavAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDP 143
Cdd:PHA03307  262 PITLPTRIWEASGWNGPSSRPGP---ASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRG 338

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 111184745  144 AVAPTSA-----ASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03307  339 AAVSPGPspsrsPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS 381

PRK07764

DNA polymerase III subunits gamma and tau; Validated

66-185

4.72e-05

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.52 E-value: 4.72e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAP-TSAATRKPDPAVAPTS--AATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRK-- 140
Cdd:PRK07764 661 DASDGGDGWPAKaGGAAPAAPPPAPAPAApaAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPvp 740

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 111184745 141 ----PDPAVAPTSAASRKPDPAVAPTSAASrkPDPAANTQHSQPPFLYE 185
Cdd:PRK07764 741 lppePDDPPDPAGAPAQPPPPPAPAPAAAP--AAAPPPSPPSEEEEMAE 787

flhF

PRK06995

flagellar biosynthesis protein FlhF;

64-159

5.17e-05

flagellar biosynthesis protein FlhF;

Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 46.11 E-value: 5.17e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  64 TSAATRKPDPAVAPT-----SAATRKPDPA-VAPTSAATRKPDPAVApTSAATRKPDPAVAPTSAATRKPDPAVAPTSAA 137
Cdd:PRK06995  57 AAPAAAQPPPAAAPAavsrpAAPAAEPAPWlVEHAKRLTAQREQLVA-RAAAPAAPEAQAPAAPAERAAAENAARRLARA 135

                         90       100
                 ....*....|....*....|..
gi 111184745 138 SRKPdPAVAPTSAASRKPDPAV 159
Cdd:PRK06995 136 AAAA-PRPRVPADAAAAVADAV 156

flhF

PRK06995

flagellar biosynthesis protein FlhF;

38-145

6.26e-05

flagellar biosynthesis protein FlhF;

Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 45.73 E-value: 6.26e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  38 NLILTIACIQLSTESQPTPVSITELYTSAATRKPDPA-VAPTSAATRKPDPAVApTSAATRKPDPAVAPTSAATRKPDPA 116
Cdd:PRK06995  50 ALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWlVEHAKRLTAQREQLVA-RAAAPAAPEAQAPAAPAERAAAENA 128

                         90       100
                 ....*....|....*....|....*....
gi 111184745 117 VAPTsAATRKPDPAVAPTSAASRKPDPAV 145
Cdd:PRK06995 129 ARRL-ARAAAAAPRPRVPADAAAAVADAV 156

Herpes_BLLF1

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

49-175

6.74e-05

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 46.06 E-value: 6.74e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   49 STESQPTPVSITELYTSAATRKPDPAVAPTSAatrkPDPAVAPTSAATRKPDPAVAPTSAATRKPDpAVAPTSAATRKPD 128
Cdd:pfam05109 444 TTTGLPSSTHVPTNLTAPASTGPTVSTADVTS----PTPAGTTSGASPVTPSPSPRDNGTESKAPD-MTSPTSAVTTPTP 518

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 111184745  129 PAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASrKPDPAANT 175
Cdd:pfam05109 519 NATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNAT-SPTPAVTT 564

PRK07764

DNA polymerase III subunits gamma and tau; Validated

65-181

7.07e-05

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.75 E-value: 7.07e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSA---ASRKP 141
Cdd:PRK07764 593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDggdGWPAK 672

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 111184745 142 DPAVAPTSAASRKPDPA-VAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK07764 673 AGGAAPAAPPPAPAPAApAAPAGAAPAQPAPAPAATPPAGQ 713

PHA03307

transcriptional regulator ICP4; Provisional

54-173

9.08e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.55 E-value: 9.08e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   54 PTPVSITELYTSAATRKPDPAVAPTSAATrkPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAV--APTSAATRKPDPAV 131
Cdd:PHA03307   97 PASPAREGSPTPPGPSSPDPPPPTPPPAS--PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASpaAVASDAASSRQAAL 174

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 111184745  132 --APTSAASRKPDPAVAP----TSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PHA03307  175 plSSPEETARAPSSPPAEpppsTPPAAASPRPPRRSSPISASASSPAP 222

PHA01929

putative scaffolding protein

87-176

9.84e-05

putative scaffolding protein

Pssm-ID: 177328 Cd Length: 306 Bit Score: 44.66 E-value: 9.84e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  87 PAVAPTSAatrkPDPAVAPTSAATrkPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAvAPTSAASRKPDPAVAPTSAAS 166
Cdd:PHA01929  21 PAAAPTPQ----PNPVIQPQAPVQ--PGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQ-APAQPAPAAPPAAGAALPEAL 93

                         90
                 ....*....|
gi 111184745 167 RKPDPAANTQ 176
Cdd:PHA01929  94 EVPPPPAFTP 103

PHA03307

transcriptional regulator ICP4; Provisional

49-182

9.89e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.55 E-value: 9.89e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   49 STESQPTPVSitelyTSAATRKPDPAVAPTSAATRKPDPA---------VAPTSAATRKPDPAVAPTSAATRKPDPAVAP 119
Cdd:PHA03307  277 GPSSRPGPAS-----SSSSPRERSPSPSPSSPGSGPAPSSprassssssSRESSSSSTSSSSESSRGAAVSPGPSPSRSP 351

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 111184745  120 TSAatrkPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVaptSAASRKPDPAANTQHSQPPF 182
Cdd:PHA03307  352 SPS----RPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR---RRARAAVAGRARRRDATGRF 407

PRK07764

DNA polymerase III subunits gamma and tau; Validated

70-181

1.00e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.36 E-value: 1.00e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  70 KPDPAVAPTSAA---TRKPDPAVAPTSAATRKPDPAVAPT-SAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAV 145
Cdd:PRK07764 583 QVEAVVGPAPGAaggEGPPAPASSGPPEEAARPAAPAAPAaPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA 662

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 111184745 146 APTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK07764 663 SDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698

PRK11633

cell division protein DedD; Provisional

66-165

1.01e-04

cell division protein DedD; Provisional

Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.84 E-value: 1.01e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATrKPDPAVAPTSAATrkpdpAVAPTSAATrkpdPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAV 145
Cdd:PRK11633  58 AAT-QALPTQPPEGAAE-----AVRAGDAAA----PSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEA 127

                         90       100
                 ....*....|....*....|..
gi 111184745 146 APTSAASRKP--DPAVAPTSAA 165
Cdd:PRK11633 128 PPAPKPEPKPvvEEKAAPTGKA 149

PRK10856

cytoskeleton protein RodZ;

99-175

1.06e-04

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 44.63 E-value: 1.06e-04

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 111184745  99 PDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAvAPTSAASRKPDPAVAPTSAASRKPDPAANT 175
Cdd:PRK10856 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA-NVDTAATPAPAAPATPDGAAPLPTDQAGVS 245

PRK10856

cytoskeleton protein RodZ;

46-138

1.06e-04

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 44.63 E-value: 1.06e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  46 IQLSTESQPTPVSITElytSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAvAPTSAATRKPDPAVAPTSAATR 125
Cdd:PRK10856 162 VPLDTSTTTDPATTPA---PAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA-NVDTAATPAPAAPATPDGAAPL 237

                         90
                 ....*....|...
gi 111184745 126 KPDPAVAPTSAAS 138
Cdd:PRK10856 238 PTDQAGVSTPAAD 250

PHA03247

large tegument protein UL36; Provisional

65-181

1.07e-04

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 1.07e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   65 SAATRKPDPAVAPTSAATRKPDPAV-APTSAATRKPDPAVAP------------TSAATRKPDPAVAPtSAATRKPDPAV 131
Cdd:PHA03247 2490 FAAGAAPDPGGGGPPDPDAPPAPSRlAPAILPDEPVGEPVHPrmltwirgleelASDDAGDPPPPLPP-AAPPAAPDRSV 2568

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 111184745  132 APTSAASRKPDPAVaptsaASRKPDPAVAPTSAASRKP-----DPAANTQHSQPP 181
Cdd:PHA03247 2569 PPPRPAPRPSEPAV-----TSRARRPDAPPQSARPRAPvddrgDPRGPAPPSPLP 2618

valS

PRK14900

valyl-tRNA synthetase; Provisional

71-171

1.08e-04

valyl-tRNA synthetase; Provisional

Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 45.37 E-value: 1.08e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   71 PDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAP----TSAATRKPDPAVAPTSAATR-KPDPAVAPTSAASRKPDPAV 145
Cdd:PRK14900  931 AEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASgiekVAEAVRKTVRRSVKKAAATRaAMKKKVAKKAPAKKAAAKKA 1010

                          90       100
                  ....*....|....*....|....*.
gi 111184745  146 APTSAASRKPDPAVAPTSAASRKPDP 171
Cdd:PRK14900 1011 AAKKAAAKKKVAKKAPAKKVARKPAA 1036

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

51-139

1.16e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 45.27 E-value: 1.16e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   51 ESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPA 130
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP-KPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                  ....*....
gi 111184745  131 VAPTSAASR 139
Cdd:PRK12270  118 TPLRGAAAA 126

PRK07764

DNA polymerase III subunits gamma and tau; Validated

66-173

1.24e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.98 E-value: 1.24e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRK------PDPAVAPTSAATRKPDPAVAPtsaasr 139
Cdd:PRK07764 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPvplppePDDPPDPAGAPAQPPPPPAPA------ 765

                         90       100       110
                 ....*....|....*....|....*....|....
gi 111184745 140 kPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PRK07764 766 -PAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDR 798

PHA03247

large tegument protein UL36; Provisional

50-171

1.27e-04

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.31 E-value: 1.27e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   50 TESQPTPVSITELYtSAATRKPDPAVAPTSAATRKPDPAVAPTSAAT-------RKPDPAVAPT--SAATRKPDPAVAPT 120
Cdd:PHA03247 2832 TSAQPTAPPPPPGP-PPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAparppvrRLARPAVSRSteSFALPPDQPERPPQ 2910

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 111184745  121 SAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAAS-RKPDP 171
Cdd:PHA03247 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSgAVPQP 2962

PHA03307

transcriptional regulator ICP4; Provisional

68-172

1.31e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.16 E-value: 1.31e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   68 TRKPDPAVAPTSAATRkPDPAVAPTSAATRKPDpavAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAP 147
Cdd:PHA03307  253 NECPLPRPAPITLPTR-IWEASGWNGPSSRPGP---ASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSS 328

                          90       100
                  ....*....|....*....|....*.
gi 111184745  148 TSAASRKPDPAVAPTSAA-SRKPDPA 172
Cdd:PHA03307  329 TSSSSESSRGAAVSPGPSpSRSPSPS 354

PRK12727

flagellar biosynthesis protein FlhF;

54-175

1.75e-04

flagellar biosynthesis protein FlhF;

Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 44.60 E-value: 1.75e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  54 PTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKpDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVA- 132
Cdd:PRK12727  71 PAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALR-QPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAv 149

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 111184745 133 -----PTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANT 175
Cdd:PRK12727 150 rtaprQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAA 197

PHA03291

envelope glycoprotein I; Provisional

47-167

2.06e-04

envelope glycoprotein I; Provisional

Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 43.79 E-value: 2.06e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  47 QLSTESQPTPvsiTELYTSAATRKPDPAV---APTSAATRKPDPAVAPTSAATRKPdPAVAPTSAATRKPdPAVAPTSAA 123
Cdd:PHA03291 165 AFPAEGTLAA---PPLGEGSADGSCDPALplsAPRLGPADVFVPATPRPTPRTTAS-PETTPTPSTTTSP-PSTTIPAPS 239

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 111184745 124 TRKPDPAVAPTSAASRKPDPavaPTSAASRKPDPAVAPTSAASR 167
Cdd:PHA03291 240 TTIAAPQAGTTPEAEGTPAP---PTPGGGEAPPANATPAPEASR 280

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

42-191

2.42e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.80 E-value: 2.42e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   42 TIACIQLSTESQPTPVSiTELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD---PAVAPTSAATRKPDPAVA 118
Cdd:pfam17823 147 AAACRANASAAPRAAIA-AASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPAtltPARGISTAATATGHPAAG 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  119 PTSAATRKPDPAVAPTSAASRKPDPAVAPTSAA------------------SRKPDPAVA-PTSAASRKPDPAANTQHSQ 179
Cdd:pfam17823 226 TALAAVGNSSPAAGTVTAAVGTVTPAALATLAAaagtvasaagtinmgdphARRLSPAKHmPSDTMARNPAAPMGAQAQG 305

                         170
                  ....*....|..
gi 111184745  180 PPFLYENIQCVH 191
Cdd:pfam17823 306 PIIQVSTDQPVH 317

PRK11901

hypothetical protein; Reviewed

91-167

2.51e-04

hypothetical protein; Reviewed

Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 43.52 E-value: 2.51e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  91 PTSAATRKPDPAVAPTSAATRKPDPAVAPTS---AATRKPDPAVAPTSAASRKPDPAVAPtsAASRKPDPAVAPT---SA 164
Cdd:PRK11901 175 PTAPATVAPSKGAKVPATAETHPTPPQKPATkkpAVNHHKTATVAVPPATSGKPKSGAAS--ARALSSAPASHYTlqlSS 252


                 ...
gi 111184745 165 ASR 167
Cdd:PRK11901 253 ASR 255

KLF9_13_N-like

cd21975

Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ...

51-177

2.62e-04

Pssm-ID: 409240 [Multi-domain] Cd Length: 163 Bit Score: 41.98 E-value: 2.62e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  51 ESQPTPVSITELYTSAATRKP-DPAVAPTSAATRKPDPA-VAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD 128
Cdd:cd21975   26 EGAGLAAGLDVRATREVAKGPgPPGPAWKPDGADSPGLVtAAPHLLAANVLAPLRGPSVEGSSLESGDADMGSDSDVAPA 105

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 111184745 129 PAVAPTSAASRKPDPAVAPTSAASRKP--------DPAVAPTSAASRKPDPAANTQH 177
Cdd:cd21975  106 SGAAASTSPESSSDAASSPSPLSLLHPgeaglepeRPRPRVRRGVRRRGVTPAAKRH 162

PRK07003

DNA polymerase III subunit gamma/tau;

66-182

2.74e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.07 E-value: 2.74e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATRKP-----DPAVAPTS---AATRKPDPAVAPTSAATRKPdPAVAPTSAAT------------- 124
Cdd:PRK07003 487 DAAFEPAPRAAAPSAATPAAvpdarAPAAASREdapAAAAPPAPEARPPTPAAAAP-AARAGGAAAAldvlrnagmrvss 565

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 111184745 125 -RKPDPAVAPTSAASRKPDPAVAPTSAASRKPDP------AVAPTSAASRKPdPAANTQHSQPPF 182
Cdd:PRK07003 566 dRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPraraatGDAPPNGAARAE-QAAESRGAPPPW 629

Herpes_BLLF1

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

55-174

2.77e-04

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.14 E-value: 2.77e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   55 TPVSITELYTSAATrKPDPAVA-PTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAP 133
Cdd:pfam05109 508 SPTSAVTTPTPNAT-SPTPAVTtPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTP 586

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 111184745  134 TSAASrkpDPAVAPTSAASRKPDPAVAPTSAASRKPDPAAN 174
Cdd:pfam05109 587 TPNAT---SPTVGETSPQANTTNHTLGGTSSTPVVTSPPKN 624

PTZ00436

60S ribosomal protein L19-like protein; Provisional

66-154

2.90e-04

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 43.40 E-value: 2.90e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrkpDPAVAPTSAASRKPDPAV 145
Cdd:PTZ00436 267 AAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAA---PPAKAATPPAKAAAPPAK 343


                 ....*....
gi 111184745 146 APTSAASRK 154
Cdd:PTZ00436 344 AAAAPVGKK 352

PHA03247

large tegument protein UL36; Provisional

99-182

3.04e-04

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 3.04e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   99 PDPAVAPTSAatrkPDPAVAPTSAATRKPDPAVaptsaASRKPDPAVAPTSAASRKP-DPAVAPTSAASRKPDPAANTQH 177
Cdd:PHA03247 2554 PLPPAAPPAA----PDRSVPPPRPAPRPSEPAV-----TSRARRPDAPPQSARPRAPvDDRGDPRGPAPPSPLPPDTHAP 2624


                  ....*
gi 111184745  178 SQPPF 182
Cdd:PHA03247 2625 DPPPP 2629

PRK07764

DNA polymerase III subunits gamma and tau; Validated

49-181

3.45e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 3.45e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  49 STESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAvAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD 128
Cdd:PRK07764 640 SAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPA-APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPA 718

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 111184745 129 PAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK07764 719 AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA 771

PRK12495

hypothetical protein; Provisional

76-167

3.57e-04

hypothetical protein; Provisional

Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 42.16 E-value: 3.57e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  76 APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATR---KPDPAVAPTSAATrKPDPAVAPTSAASRKP---DPAVAPTS 149
Cdd:PRK12495  89 DAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDeaaTDPPATAAARDGP-TPDPTAQPATPDERRSprqRPPVSGEP 167

                         90
                 ....*....|....*...
gi 111184745 150 AASRKPDPAVAPTSAASR 167
Cdd:PRK12495 168 PTPSTPDAHVAGTLQAAR 185

SepH

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...

52-176

3.57e-04

Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.22 E-value: 3.57e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  52 SQPTP--VSITELYTSAATRKPDPaVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKP-DPAVAPTSAATRKPD 128
Cdd:NF040712 193 GRPLRplATVPRLAREPADARPEE-VEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPeDEPVGPGAAPAAEPD 271

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 111184745 129 PAV--APTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQ 176
Cdd:NF040712 272 EATrdAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPA 321

PHA03247

large tegument protein UL36; Provisional

69-181

3.60e-04

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 3.60e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   69 RKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVA--PTSAATRKPDPAVAPTSAASRKPDPAVA 146
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPppPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 111184745  147 PTSAASRKPDP----------AVAPTSAA---SRKPDPAANTQHSQPP 181
Cdd:PHA03247 2945 PTTDPAGAGEPsgavpqpwlgALVPGRVAvprFRVPQPAPSREAPASS 2992

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

72-165

4.09e-04

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 43.07 E-value: 4.09e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  72 DPAVAPTSAATRKPDPAVAPtsAATRKPDPAVAPTSAATRKPDPAVAPTSAAtrkPDPAVAPTSAASRKPDPAVAPTSAA 151
Cdd:NF041121  16 GRAAAPPSPEGPAPTAASQP--ATPPPPAAPPSPPGDPPEPPAPEPAPLPAP---YPGSLAPPPPPPPGPAGAAPGAALP 90

                         90
                 ....*....|....
gi 111184745 152 SRKPDPAVAPTSAA 165
Cdd:NF041121  91 VRVPAPPALPNPLE 104

PHA03381

tegument protein VP22; Provisional

56-163

4.32e-04

tegument protein VP22; Provisional

Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 42.69 E-value: 4.32e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  56 PVSITELYTSAATRKPDPAVAPTSAATRkpdpavAPTSAATRKPDPAVAPTsAATRKPdpaVAPTSAATrkPDpAVAPTs 135
Cdd:PHA03381  93 PHAQPEASGPGPARGARGPAGSRGRGRR------AESPSPRDPPNPKGASA-PRGRKS---ACADSAAL--LD-APAPA- 158

                         90       100
                 ....*....|....*....|....*...
gi 111184745 136 AASRKPDPAVAPtsaasRKPDPAVAPTS 163
Cdd:PHA03381 159 APKRQKTPAGLA-----RKLHFSTAPTS 181

PRK11901

hypothetical protein; Reviewed

77-153

4.41e-04

hypothetical protein; Reviewed

Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 42.75 E-value: 4.41e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  77 PTSAATRKPDPAVAPTSAATRKPDPAVAPTS---AATRKPDPAVAPTSAATRKPDPAVAPtsAASRKPDPAVAPT---SA 150
Cdd:PRK11901 175 PTAPATVAPSKGAKVPATAETHPTPPQKPATkkpAVNHHKTATVAVPPATSGKPKSGAAS--ARALSSAPASHYTlqlSS 252


                 ...
gi 111184745 151 ASR 153
Cdd:PRK11901 253 ASR 255

PRK10856

cytoskeleton protein RodZ;

90-173

4.43e-04

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 42.71 E-value: 4.43e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  90 APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASrkPDPAVAPTSAASRKP 169
Cdd:PRK10856 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATP--DGAAPLPTDQAGVST 246


                 ....
gi 111184745 170 DPAA 173
Cdd:PRK10856 247 PAAD 250

Neisseria_TspB

pfam05616

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...

50-151

4.56e-04

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.

Pssm-ID: 283306 [Multi-domain] Cd Length: 517 Bit Score: 43.16 E-value: 4.56e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   50 TESQPTPVSItelytsAATRKPDPAVAPTSAATRKPDPAVAPTSAAT--RKPDPAVAPTSAATRKPDPAVAPTSAATRKP 127
Cdd:pfam05616 297 TDRNGNPVQV------AATFGRDAQGNTTADVQVIPRPDLTPASAEAphAQPLPEVSPAENPANNPDPDENPGTRPNPEP 370

                          90       100
                  ....*....|....*....|....
gi 111184745  128 DPAVAPTSAASRKPDPAVAPTSAA 151
Cdd:pfam05616 371 DPDLNPDANPDTDGQPGTRPDSPA 394

Neisseria_TspB

pfam05616

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...

99-165

4.64e-04

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.

Pssm-ID: 283306 [Multi-domain] Cd Length: 517 Bit Score: 43.16 E-value: 4.64e-04

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111184745   99 PDPAVAPTSAAT--RKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAA 165
Cdd:pfam05616 326 PRPDLTPASAEAphAQPLPEVSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQPGTRPDSPA 394

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

65-188

4.66e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 42.99 E-value: 4.66e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPD--PAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPD 142
Cdd:PLN03209 439 SPYARYEDlkPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPV 518

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 111184745 143 PAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPPF-LYENIQ 188
Cdd:PLN03209 519 GKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYtMYEDLK 565

rne

PRK10811

ribonuclease E; Reviewed

42-185

4.69e-04

ribonuclease E; Reviewed

Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.49 E-value: 4.69e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   42 TIACIQLSTESQPTPVSITELYTSAA----TRKPDPAVAPTSAAT---RKPDPAVAPTSAATRKP--DPAVAPTSAATRK 112
Cdd:PRK10811  884 SAPVVEAVAEVVEEPVVVAEPQPEEVvvveTTHPEVIAAPVTEQPqviTESDVAVAQEVAEHAEPvvEPQDETADIEEAA 963

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  113 PDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAAS----RKPDPAANTQ---HS---QPPF 182
Cdd:PRK10811  964 ETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATapmtRAPAPEYVPEaprHSdwqRPTF 1043


                  ...
gi 111184745  183 LYE 185
Cdd:PRK10811 1044 AFE 1046

PHA03307

transcriptional regulator ICP4; Provisional

61-173

4.80e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 4.80e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   61 ELYTSAATRKPDPAVAPTSAAtrkPDPAVAPTSAATRkPDPAVAPTSAATRKPDpavAPTSAATRKPDPAVAPTSAASRK 140
Cdd:PHA03307  235 SSSDSSSSESSGCGWGPENEC---PLPRPAPITLPTR-IWEASGWNGPSSRPGP---ASSSSSPRERSPSPSPSSPGSGP 307

                          90       100       110
                  ....*....|....*....|....*....|...
gi 111184745  141 PDPAVAPTSAASRKPDPAVAPTSAASRKPDPAA 173
Cdd:PHA03307  308 APSSPRASSSSSSSRESSSSSTSSSSESSRGAA 340

Atrophin-1

pfam03154

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...

70-181

5.07e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.

Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.22 E-value: 5.07e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   70 KPDPAVAPTSAATRKPDPAVAPTSAATrkpdpaVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPD--PAVAP 147
Cdd:pfam03154 170 QPPVLQAQSGAASPPSPPPPGTTQAAT------AGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTlhPQRLP 243

                          90       100       110
                  ....*....|....*....|....*....|....
gi 111184745  148 TSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:pfam03154 244 SPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPP 277

PHA03247

large tegument protein UL36; Provisional

52-180

5.14e-04

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 5.14e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   52 SQPTPVSITELYTSAATRKPDPAVAPT--SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDP 129
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSteSFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTT 2947

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 111184745  130 AVAPTSAAS-RKPDP---AVAPTS-AASRKPDPAVAPTSAASrKPDPAANTQHSQP 180
Cdd:PHA03247 2948 DPAGAGEPSgAVPQPwlgALVPGRvAVPRFRVPQPAPSREAP-ASSTPPLTGHSLS 3002

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

49-139

5.32e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.34 E-value: 5.32e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   49 STESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKP-DPAVAPTSAATRKP 127
Cdd:PRK12270   44 PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPaAAAVEDEVTPLRGA 123

                          90
                  ....*....|..
gi 111184745  128 DPAVAPTSAASR 139
Cdd:PRK12270  124 AAAVAKNMDASL 135

PRK11901

hypothetical protein; Reviewed

47-139

5.36e-04

hypothetical protein; Reviewed

Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 42.36 E-value: 5.36e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  47 QLSTESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPavaPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRK 126
Cdd:PRK11901 159 QVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTP---PQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASA 235

                         90       100
                 ....*....|....*....|
gi 111184745 127 PDPAVAPT-------SAASR 139
Cdd:PRK11901 236 RALSSAPAshytlqlSSASR 255

PHA03381

tegument protein VP22; Provisional

78-180

5.63e-04

tegument protein VP22; Provisional

Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 42.31 E-value: 5.63e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  78 TSAATRKPDPAvaptsaATRKPDP-AVAPTSAATRKPDPAVAPTSAATRkpdpavAPTSAASRKPDPAVAPTSAASRkpd 156
Cdd:PHA03381  78 SSEDERPADPR------PSRRPHAqPEASGPGPARGARGPAGSRGRGRR------AESPSPRDPPNPKGASAPRGRK--- 142

                         90       100
                 ....*....|....*....|....
gi 111184745 157 PAVAPTSAASRKPDPAANTQHSQP 180
Cdd:PHA03381 143 SACADSAALLDAPAPAAPKRQKTP 166

PHA03307

transcriptional regulator ICP4; Provisional

49-178

5.69e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 5.69e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   49 STESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPdPAVAPTSAATRKPDPAVAPTSAATRK-P 127
Cdd:PHA03307  182 TARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA-GASSSDSSSSESSGCGWGPENECPLPrP 260

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 111184745  128 DPAVAPTS--AASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHS 178
Cdd:PHA03307  261 APITLPTRiwEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPR 313

valS

PRK14900

valyl-tRNA synthetase; Provisional

65-154

6.08e-04

valyl-tRNA synthetase; Provisional

Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 43.06 E-value: 6.08e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   65 SAATRKPDPAVAP----TSAATRKPDPAVAPTSAATR-KPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASR 139
Cdd:PRK14900  953 SEAAQQAATAVASgiekVAEAVRKTVRRSVKKAAATRaAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVAR 1032

                          90
                  ....*....|....*
gi 111184745  140 KPDPAVAPTSAASRK 154
Cdd:PRK14900 1033 KPAAKKAAKKPARKA 1047

PRK11901

hypothetical protein; Reviewed

105-169

6.67e-04

hypothetical protein; Reviewed

Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 41.98 E-value: 6.67e-04

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 111184745 105 PTSAATRKPDPAVAPTSAATRKPDPAVAPTS---AASRKPDPAVAPTSAASRKPDPAVAPTSAASRKP 169
Cdd:PRK11901 175 PTAPATVAPSKGAKVPATAETHPTPPQKPATkkpAVNHHKTATVAVPPATSGKPKSGAASARALSSAP 242

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

86-173

6.76e-04

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 42.30 E-value: 6.76e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  86 DPAVAPTSAATRKPDPAVAPtsAATRKPDPAVAPTSAATRKPDPAVAPTSAASrkpDPAVAPTSAASRKPDPAVAPTSAA 165
Cdd:NF041121  16 GRAAAPPSPEGPAPTAASQP--ATPPPPAAPPSPPGDPPEPPAPEPAPLPAPY---PGSLAPPPPPPPGPAGAAPGAALP 90


                 ....*...
gi 111184745 166 SRKPDPAA 173
Cdd:NF041121  91 VRVPAPPA 98

SepH

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...

51-172

7.47e-04

Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.06 E-value: 7.47e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  51 ESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPA------VAPTSAATRKPDPAVAP-TSAATRKPDPAVAPTSAA 123
Cdd:NF040712 206 AREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLAsarrrrAGVEQPEDEPVGPGAAPaAEPDEATRDAGEPPAPGA 285

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 111184745 124 TRKPDPAVAPTSAASrKPDPAVAPTSAASRKPDPAVAPTsAASRKPDPA 172
Cdd:NF040712 286 AETPEAAEPPAPAPA-APAAPAAPEAEEPARPEPPPAPK-PKRRRRRAS 332

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

63-181

7.49e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 42.61 E-value: 7.49e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  63 YTSAATRKPDPAVAPTSAATRKPDP----AVAPTSAATRKPDPAVAPTSAATrKPDPAVA----PTSAATRKPD--PAVA 132
Cdd:PLN03209 374 YTAYEDLKPPTSPIPTPPSSSPASSksvdAVAKPAEPDVVPSPGSASNVPEV-EPAQVEAkktrPLSPYARYEDlkPPTS 452

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 111184745 133 PTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PLN03209 453 PSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYA 501

PRK07994

DNA polymerase III subunits gamma and tau; Validated

44-166

8.20e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.16 E-value: 8.20e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  44 ACIQLSTESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTS--AATRKPDPAVAPTS 121
Cdd:PRK07994 378 AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSepAAASRARPVNSALE 457

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 111184745 122 AATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAAS 166
Cdd:PRK07994 458 RLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKK 502

PHA03307

transcriptional regulator ICP4; Provisional

65-174

8.28e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.47 E-value: 8.28e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   65 SAATRKPDPAVAPTSAATRKPDPAVAPTSAATRkpdPAVAPTSAATRKPDPAVAPTSA-----ATRKPDPAVAPTSAASR 139
Cdd:PHA03307  813 SRTASKRKSRSHTPDGGSESSGPARPPGAAARP---PPARSSESSKSKPAAAGGRARGkngrrRPRPPEPRARPGAAAPP 889

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 111184745  140 KPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAAN 174
Cdd:PHA03307  890 KAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPR 924

half-pint

TIGR01645

poly-U binding splicing factor, half-pint family; The proteins represented by this model ...

85-183

9.04e-04

Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 42.36 E-value: 9.04e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   85 PDPAVAPTSAATRKPDPAVApTSAATRKPDPAVAPTSAAT---RKPDPAVAPTSAASRKPDPAV--APTSAAsrKPDPAV 159
Cdd:TIGR01645 285 PDALLQPATVSAIPAAAAVA-AAAATAKIMAAEAVAGAAVlgpRAQSPATPSSSLPTDIGNKAVvsSAKKEA--EEVPPL 361

                          90       100
                  ....*....|....*....|....
gi 111184745  160 APTSAASRKPDPAANTQHSQPPFL 183
Cdd:TIGR01645 362 PQAAPAVVKPGPMEIPTPVPPPGL 385

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

47-143

9.94e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.01 E-value: 9.94e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  47 QLSTESQPTPVSITELYTSAATRKPDPAV-APTSA-ATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAAT 124
Cdd:PRK14951 394 VAQAAAAPAPAAAPAAAASAPAAPPAAAPpAPVAApAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVA 473

                         90
                 ....*....|....*....
gi 111184745 125 RKPDPAVAPTSAASRKPDP 143
Cdd:PRK14951 474 SAAPAPAAAPAAARLTPTE 492

PRK12727

flagellar biosynthesis protein FlhF;

44-182

1.02e-03

flagellar biosynthesis protein FlhF;

Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 41.90 E-value: 1.02e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  44 ACIQLSTESQPTPVSITELYTSAATRKPDPAVAPTSAAtrKPDPAVAPTSAATRKPDPAVAPTSAATRKpDPAVAPTSAA 123
Cdd:PRK12727  49 ELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAP--LKLSANANMSQRQRVASAAEDMIAAMALR-QPVSVPRQAP 125

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 111184745 124 TRKPDPAVAPTSAASRKPDPAVAPT------SAASRKPDP--AVAPTSAASRKPDPAANTQHSQPPF 182
Cdd:PRK12727 126 AAAPVRAASIPSPAAQALAHAAAVRtaprqeHALSAVPEQlfADFLTTAPVPRAPVQAPVVAAPAPV 192

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

39-165

1.10e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 41.72 E-value: 1.10e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  39 LILTIACIQLSTESQPTPVSITElyTSAATRKPDPAVAPTsaaTRKPDPAVAPTSAATRKPDPAVAPTSAatrkPDPAVA 118
Cdd:PRK14950 349 LPLELAVIEALLVPVPAPQPAKP--TAAAPSPVRPTPAPS---TRPKAAAAANIPPKEPVRETATPPPVP----PRPVAP 419

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 111184745 119 PTSaatrkPDPAVAPTSAASRKPDPaVAPTSAASRKPDPAVAPTSAA 165
Cdd:PRK14950 420 PVP-----HTPESAPKLTRAAIPVD-EKPKYTPPAPPKEEEKALIAD 460

PTZ00436

60S ribosomal protein L19-like protein; Provisional

83-181

1.25e-03

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 41.47 E-value: 1.25e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  83 RKPDPAVAPTSAATRKPDPAVAPTSAATRKpdpAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPT 162
Cdd:PTZ00436 189 RREDAAAAAAAKQKAAAKKAAAPSGKKSAK---AAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPA 265

                         90
                 ....*....|....*....
gi 111184745 163 SAASRKPDPAANTQHSQPP 181
Cdd:PTZ00436 266 KAAAPPAKAAAPPAKAAAP 284

PRK11633

cell division protein DedD; Provisional

80-181

1.39e-03

cell division protein DedD; Provisional

Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 40.37 E-value: 1.39e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  80 AATrKPDPAVAPTSAATrkpdpAVAPTSAATrkpdPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAV 159
Cdd:PRK11633  58 AAT-QALPTQPPEGAAE-----AVRAGDAAA----PSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEA 127

                         90       100
                 ....*....|....*....|..
gi 111184745 160 APTSaasrKPDPAANTQHSQPP 181
Cdd:PRK11633 128 PPAP----KPEPKPVVEEKAAP 145

PRK12323

DNA polymerase III subunit gamma/tau;

66-160

1.44e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.79 E-value: 1.44e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  66 AATRKPDPAVAP---------TSAATRKPDPAVAPTSAATrKPDPAVAPTSAA--TRKPDPAVAPTSAATRKPDPAVAPt 134
Cdd:PRK12323 486 AAAPAPADDDPPpweelppefASPAPAQPDAAPAGWVAES-IPDPATADPDDAfeTLAPAPAAAPAPRAAAATEPVVAP- 563

                         90       100
                 ....*....|....*....|....*.
gi 111184745 135 saasRKPDPAVAPTSAASRKPDPAVA 160
Cdd:PRK12323 564 ----RPPRASASGLPDMFDGDWPALA 585

Herpes_BLLF1

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

52-166

1.53e-03

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 41.44 E-value: 1.53e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   52 SQPTPVSITElyTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATrkpDPAV 131
Cdd:pfam05109 521 TSPTPAVTTP--TPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNAT---SPTV 595

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 111184745  132 APTSAASRKPDPAVAPTSAASRKPDPAVAPTSAAS 166
Cdd:pfam05109 596 GETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVT 630

PRK10672

endolytic peptidoglycan transglycosylase RlpA;

76-152

1.58e-03

endolytic peptidoglycan transglycosylase RlpA;

Pssm-ID: 236733 [Multi-domain] Cd Length: 361 Bit Score: 41.20 E-value: 1.58e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  76 APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATR-----KPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSA 150
Cdd:PRK10672 206 TPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGflgapTTLAPGVLEGSEPTPTAPSSAPATAPAAAAPQAAATSSS 285


                 ..
gi 111184745 151 AS 152
Cdd:PRK10672 286 AS 287

PRK11633

cell division protein DedD; Provisional

52-144

1.66e-03

cell division protein DedD; Provisional

Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 40.37 E-value: 1.66e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  52 SQPTPVSITELYTSAAtrkPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTsaatrkPDPAV 131
Cdd:PRK11633  65 TQPPEGAAEAVRAGDA---AAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPA------PKPEP 135

                         90
                 ....*....|...
gi 111184745 132 APtsAASRKPDPA 144
Cdd:PRK11633 136 KP--VVEEKAAPT 146

PRK10856

cytoskeleton protein RodZ;

113-181

1.86e-03

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 40.78 E-value: 1.86e-03

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 111184745 113 PDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PRK10856 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLP 238

motB

PRK12799

flagellar motor protein MotB; Reviewed

68-166

1.90e-03

flagellar motor protein MotB; Reviewed

Pssm-ID: 183756 [Multi-domain] Cd Length: 421 Bit Score: 40.85 E-value: 1.90e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  68 TRKPDPAVAPTSAATRKPDPAVAPTSAATrkPDPAVAPTSAATrkpdPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAP 147
Cdd:PRK12799 295 THGTVPVAAVTPSSAVTQSSAITPSSAAI--PSPAVIPSSVTT----QSATTTQASAVALSSAGVLPSDVTLPGTVALPA 368

                         90
                 ....*....|....*....
gi 111184745 148 TSAASRKPDPAVAPTSAAS 166
Cdd:PRK12799 369 AEPVNMQPQPMSTTETQQS 387

PHA03378

EBNA-3B; Provisional

65-184

2.09e-03

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.21 E-value: 2.09e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  65 SAATRKPDPAVAPtSAATRKPDPAVAPTsaatrkpdPAVAPTSAATRKPDPAVAPTSA--ATRKPDPAVAPTSAASRKPD 142
Cdd:PHA03378 759 AAPGRARPPAAAP-GAPTPQPPPQAPPA--------PQQRPRGAPTPQPPPQAGPTSMqlMPRAAPGQQGPTKQILRQLL 829

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 111184745 143 PAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHS--QPPFLY 184
Cdd:PHA03378 830 TGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKivQAPVFY 873

PHA03247

large tegument protein UL36; Provisional

67-173

2.22e-03

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.08 E-value: 2.22e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   67 ATRKPDP-AVAPTSAAT--------RKPDPAVAPT-----SAATRKPDPAVAPTSAATRKPD-PAVAPtsaATRKPDPAV 131
Cdd:PHA03247  383 RKRRSARhAATPFARGPggddqtrpAAPVPASVPTpaptpVPASAPPPPATPLPSAEPGSDDgPAPPP---ERQPPAPAT 459

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 111184745  132 APTSAASRKPDPAVAPTSAASRKPDPAVA-PTSAASRKPDPAA 173
Cdd:PHA03247  460 EPAPDDPDDATRKALDALRERRPPEPPGAdLAELLGRHPDTAG 502

motB

PRK05996

MotB family protein;

67-176

2.23e-03

MotB family protein;

Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 40.84 E-value: 2.23e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  67 ATRKP-DP-----AVAPTSAATRKPDPAVAptSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPdpavaPTSAASRK 140
Cdd:PRK05996 176 AYRDPfDPdfwskQVEVTTAGDLLPPGQAR--EQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEE-----LIADAKKA 248

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 111184745 141 PDPAVAPTSAASRKPDPAVAPTSAASRKPDPAANTQ 176
Cdd:PRK05996 249 ATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQA 284

PRK12727

flagellar biosynthesis protein FlhF;

54-172

2.39e-03

flagellar biosynthesis protein FlhF;

Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 40.74 E-value: 2.39e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  54 PTPVSITELYTSAATRKPdPAVA------PTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAV-----APTSA 122
Cdd:PRK12727 127 AAPVRAASIPSPAAQALA-HAAAvrtaprQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIaaalaAHAAY 205

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 111184745 123 ATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPA 172
Cdd:PRK12727 206 AQDDDEQLDDDGFDLDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPA 255

PRK12727

flagellar biosynthesis protein FlhF;

62-180

2.43e-03

flagellar biosynthesis protein FlhF;

Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 40.74 E-value: 2.43e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  62 LYTSAATRKPDPAVAPTSAATrKPDPAVA-------------PTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD 128
Cdd:PRK12727 114 LRQPVSVPRQAPAAAPVRAAS-IPSPAAQalahaaavrtaprQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPV 192

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 111184745 129 PAV-----APTSAASRKPDPAVAPTSAASRKPDPAVAPTS-----AASRKPDPAANTQHSQP 180
Cdd:PRK12727 193 PAIaaalaAHAAYAQDDDEQLDDDGFDLDDALPQILPPAAlppivVAPAAPAALAAVAAAAP 254

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

41-181

2.67e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 40.71 E-value: 2.67e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   41 LTIACIQLSTESQPTP-VSITELYTSAATRKP-DPAVAPTSaATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPD---P 115
Cdd:pfam17823 130 LPAAIAALPSEAFSAPrAAACRANASAAPRAAiAAASAPHA-ASPAPRTAASSTTAASSTTAASSAPTTAASSAPAtltP 208

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 111184745  116 AVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPA-VAPTSAASRKPDPAANTQHSQPP 181
Cdd:pfam17823 209 ARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAaLATLAAAAGTVASAAGTINMGDP 275

SepH

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...

49-159

2.76e-03

Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 40.14 E-value: 2.76e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  49 STESQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAA-----TRKPDPAVAPTSAATRKPDPAVaptsaa 123
Cdd:NF040712 228 ATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATrdagePPAPGAAETPEAAEPPAPAPAA------ 301

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 111184745 124 trkPDPAVAPTSAASRKPDPAVAPTsAASRKPDPAV 159
Cdd:NF040712 302 ---PAAPAAPEAEEPARPEPPPAPK-PKRRRRRASV 333

PRK10905

cell division protein DamX; Validated

67-166

2.98e-03

cell division protein DamX; Validated

Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 39.92 E-value: 2.98e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  67 ATRKPDPA-VAPTSAATRKPDPAVAPTS--AATRKPD----------PAVAPTSAATRKPDPAVAPTSAATRKPDPAVAP 133
Cdd:PRK10905 121 STLPTEPAtVAPVRNGNASRQTAKTQTAerPATTRPArkqaviepkkPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAA 200

                         90       100       110
                 ....*....|....*....|....*....|...
gi 111184745 134 TSAASRKPDPAVAPTSAASrkpdPAVAPTSAAS 166
Cdd:PRK10905 201 TSTPAPKETATTAPVQTAS----PAQTTATPAA 229

DUF4045

pfam13254

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...

56-181

3.11e-03

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.

Pssm-ID: 433066 [Multi-domain] Cd Length: 415 Bit Score: 40.15 E-value: 3.11e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   56 PVSITELYTSAATRKPDPAVAPTSAATRK-PDPAvaPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPT 134
Cdd:pfam13254 220 SPSVSGISADSSPTKEEPSEEADTLSTDKeQSPA--PTSASEPPPKTKELPKDSEEPAAPSKSAEASTEKKEPDTESSPE 297

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 111184745  135 SAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPA-------ANTQHSQPP 181
Cdd:pfam13254 298 TSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSPKPKPQsppkdfrANLRSREVP 351

PHA03307

transcriptional regulator ICP4; Provisional

49-175

3.59e-03

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.54 E-value: 3.59e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   49 STESQPTPVSITELYTSAATRKPDPAVAP--TSAATRKPDPAVAPTSAatrkPDPAVAPTSAATRKPDPAVAPTSAATRK 126
Cdd:PHA03307  307 PAPSSPRASSSSSSSRESSSSSTSSSSESsrGAAVSPGPSPSRSPSPS----RPPPPADPSSPRKRPRPSRAPSSPAASA 382

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 111184745  127 PDPAVaptSAASRKPDPAVAPTSAASRKP--DPAVAPTSAASRKPDPAANT 175
Cdd:PHA03307  383 GRPTR---RRARAAVAGRARRRDATGRFPagRPRPSPLDAGAASGAFYARY 430

PHA03307

transcriptional regulator ICP4; Provisional

69-181

3.59e-03

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.54 E-value: 3.59e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   69 RKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAP----TSAATRKPDPAVAPTSAASRKPDPa 144
Cdd:PHA03307  142 GSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEpppsTPPAAASPRPPRRSSPISASASSP- 220

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 111184745  145 vAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQPP 181
Cdd:PHA03307  221 -APAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256

PRK10856

cytoskeleton protein RodZ;

104-181

4.24e-03

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 39.62 E-value: 4.24e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745 104 APTSAATRKPDPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAA--SRKPDPAANTQHSQPP 181
Cdd:PRK10856 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATpdGAAPLPTDQAGVSTPA 248

DUF5585

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

65-184

4.30e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 39.94 E-value: 4.30e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745   65 SAATRKPDPAVA-PTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAasrkpdp 143
Cdd:pfam17823 274 DPHARRLSPAKHmPSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLA------- 346

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 111184745  144 AVAPTSAASRKPDPAVAPTSAASRKPDPAANTQHSQP-PFLY 184
Cdd:pfam17823 347 VVTTTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPsPLLP 388

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

52-164

4.37e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 39.91 E-value: 4.37e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  52 SQPTPVSITELYTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAVAPTSAATRKPDPAV 131
Cdd:PLN03209 456 TAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNS 535

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 111184745 132 APTSAASRKPD---PAVAPTSAASRKPD--PAVAPTSA 164
Cdd:PLN03209 536 APPTALADEQHhaqPKPRPLSPYTMYEDlkPPTSPTPS 573

COG5373

Uncharacterized membrane protein [Function unknown];

72-152

5.02e-03

Uncharacterized membrane protein [Function unknown];

Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 39.98 E-value: 5.02e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  72 DPAVAPTSAATRKPDPAVAPTSAAtrkPDPAVAPTSAATRKPDPAVAPtsaatrkPDPAVAPTSAASRkpdPAVAPTSAA 151
Cdd:COG5373   39 EAAEAASAPAEPEPEAAAAATAAA---PEAAPAPVPEAPAAPPAAAEA-------PAPAAAAPPAEAE---PAAAPAAAS 105


                 .
gi 111184745 152 S 152
Cdd:COG5373  106 S 106

COG5373

Uncharacterized membrane protein [Function unknown];

86-166

5.02e-03

Uncharacterized membrane protein [Function unknown];

Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 39.98 E-value: 5.02e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 111184745  86 DPAVAPTSAATRKPDPAVAPTSAAtrkPDPAVAPTSAATRKPDPAVAPtsaasrkPDPAVAPTSAASRkpdPAVAPTSAA 165
Cdd:COG5373   39 EAAEAASAPAEPEPEAAAAATAAA---PEAAPAPVPEAPAAPPAAAEA-------PAPAAAAPPAEAE---PAAAPAAAS 105


                 .
gi 111184745 166 S 166
Cdd:COG5373  106 S 106

SAV_2336_NTERM