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Conserved domains on  [gi|293613428|gb|ADE53583|]
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Alpha-L-fucosidase [Coraliomargarita akajimensis DSM 45221]

Protein Classification

glycoside hydrolase family 95 protein( domain architecture ID 10628485)

glycoside hydrolase family 95 protein such as alpha-L-fucosidase, which hydrolyzes alpha-1,2-linked fucose and is involved in the degradation of fucosylated xyloglucans

CAZY:  GH95
EC:  3.2.1.-
Gene Ontology:  GO:0016798

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyco_hyd_65N_2 pfam14498
Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the ...
28-272 5.34e-98

Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.


:

Pssm-ID: 405224  Cd Length: 233  Bit Score: 303.41  E-value: 5.34e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428   28 LRYDRPADAWTDALPVGNGSMGAMVFGGIEKERIQFNQDTLWAGEPRSYAHEDAVDVLPEIRTLLFDGKQAEATKLAGER 107
Cdd:pfam14498   1 LWYDQPATNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPEIRALLFAGDYAEAERLAGKM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428  108 FMSEplrQAAYQPFGDLWIQFPAYGQAGEYERSLDLDGALATTSYTIGDVEFTRTVFASYPDGVIAIRIEASKPGMVNFT 187
Cdd:pfam14498  81 MGGG---QGSYQPLGDLTIDSGNEGDVSGYRRELDLSTAIATTTYSVGGVTYTREYFASYPDQVLVVRLTASKAGSLNLT 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428  188 AGLTTPHqSNSVVEPLNRNTLRLRGQVDAFTDkketftfeGAMRFEAQLRVYTDGGMCQASGGVVEVGGATSATLYLVAA 267
Cdd:pfam14498 158 VSLETPL-SRLAVVTGDGNTLTLRGQAPAGGD--------NGIRFEAILRVVATGGSVAVDGGTLTVEGADEVTLVIAAA 228

                  ....*
gi 293613428  268 TDFTN 272
Cdd:pfam14498 229 TNYRG 233
 
Name Accession Description Interval E-value
Glyco_hyd_65N_2 pfam14498
Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the ...
28-272 5.34e-98

Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.


Pssm-ID: 405224  Cd Length: 233  Bit Score: 303.41  E-value: 5.34e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428   28 LRYDRPADAWTDALPVGNGSMGAMVFGGIEKERIQFNQDTLWAGEPRSYAHEDAVDVLPEIRTLLFDGKQAEATKLAGER 107
Cdd:pfam14498   1 LWYDQPATNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPEIRALLFAGDYAEAERLAGKM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428  108 FMSEplrQAAYQPFGDLWIQFPAYGQAGEYERSLDLDGALATTSYTIGDVEFTRTVFASYPDGVIAIRIEASKPGMVNFT 187
Cdd:pfam14498  81 MGGG---QGSYQPLGDLTIDSGNEGDVSGYRRELDLSTAIATTTYSVGGVTYTREYFASYPDQVLVVRLTASKAGSLNLT 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428  188 AGLTTPHqSNSVVEPLNRNTLRLRGQVDAFTDkketftfeGAMRFEAQLRVYTDGGMCQASGGVVEVGGATSATLYLVAA 267
Cdd:pfam14498 158 VSLETPL-SRLAVVTGDGNTLTLRGQAPAGGD--------NGIRFEAILRVVATGGSVAVDGGTLTVEGADEVTLVIAAA 228

                  ....*
gi 293613428  268 TDFTN 272
Cdd:pfam14498 229 TNYRG 233
 
Name Accession Description Interval E-value
Glyco_hyd_65N_2 pfam14498
Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the ...
28-272 5.34e-98

Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.


Pssm-ID: 405224  Cd Length: 233  Bit Score: 303.41  E-value: 5.34e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428   28 LRYDRPADAWTDALPVGNGSMGAMVFGGIEKERIQFNQDTLWAGEPRSYAHEDAVDVLPEIRTLLFDGKQAEATKLAGER 107
Cdd:pfam14498   1 LWYDQPATNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPEIRALLFAGDYAEAERLAGKM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428  108 FMSEplrQAAYQPFGDLWIQFPAYGQAGEYERSLDLDGALATTSYTIGDVEFTRTVFASYPDGVIAIRIEASKPGMVNFT 187
Cdd:pfam14498  81 MGGG---QGSYQPLGDLTIDSGNEGDVSGYRRELDLSTAIATTTYSVGGVTYTREYFASYPDQVLVVRLTASKAGSLNLT 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 293613428  188 AGLTTPHqSNSVVEPLNRNTLRLRGQVDAFTDkketftfeGAMRFEAQLRVYTDGGMCQASGGVVEVGGATSATLYLVAA 267
Cdd:pfam14498 158 VSLETPL-SRLAVVTGDGNTLTLRGQAPAGGD--------NGIRFEAILRVVATGGSVAVDGGTLTVEGADEVTLVIAAA 228

                  ....*
gi 293613428  268 TDFTN 272
Cdd:pfam14498 229 TNYRG 233
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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