NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|429132390|gb|AFZ69404|]
View 

ABC-type dipeptide/oligopeptide/nickel transport system, permease component (plasmid) [Deinococcus peraridilitoris DSM 19664]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 5.55e-127

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 364.39  E-value: 5.55e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQATAERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGTS 80
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  81 IRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLYLE 160
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 161 WLPVVGN--------AGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTV 232
Cdd:COG0601  161 WLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 429132390 233 TIIGLQFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIR 304
Cdd:COG0601  241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 5.55e-127

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 364.39  E-value: 5.55e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQATAERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGTS 80
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  81 IRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLYLE 160
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 161 WLPVVGN--------AGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTV 232
Cdd:COG0601  161 WLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 429132390 233 TIIGLQFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIR 304
Cdd:COG0601  241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-304 6.23e-88

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 265.04  E-value: 6.23e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQATAERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGTS 80
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  81 IRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLYLE 160
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 161 WLPVVGNAGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIGLQFG 240
Cdd:PRK15081 161 WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 429132390 241 GLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIR 304
Cdd:PRK15081 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-305 1.41e-81

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 249.29  E-value: 1.41e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390    1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDP--VAIMLGE-QATAERISVLRQQLGLDRPLYVQYGTFLLNALQGDF 77
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPaeDYLRLSHiPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   78 GTSIRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSL 157
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  158 YLEWLPVVGNAGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIGL 237
Cdd:TIGR02789 161 YLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGM 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429132390  238 QFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIRQ 305
Cdd:TIGR02789 241 HIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRR 308
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-102 5.81e-21

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 85.74  E-value: 5.81e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390    1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQATAERISVLRQQLGLDRPLYVQYGTFLLNALQGD---- 76
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdfga 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 429132390   77 --------FGTSIRSGQPVLQEVTRQLPATLILA 102
Cdd:pfam19300  81 vghcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 95-284 1.02e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.16  E-value: 1.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  95 LPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVpLIGLSMPTFWSGLLMILLFSLYLEWLpvvgnaGLASLI 174
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRII-DLLLSLPSLVLGLLLVLLFGVLLGWG------ILPGLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 175 MPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIGLQFGGLIGGAVIVESVFA 254
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....
gi 429132390 255 ----RPGLGRLAVNAILTRDFPMVQAVVLFGAVG 284
Cdd:cd06261  154 geapGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 5.55e-127

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 364.39  E-value: 5.55e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQATAERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGTS 80
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  81 IRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLYLE 160
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 161 WLPVVGN--------AGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTV 232
Cdd:COG0601  161 WLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 429132390 233 TIIGLQFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIR 304
Cdd:COG0601  241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-304 6.23e-88

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 265.04  E-value: 6.23e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQATAERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGTS 80
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  81 IRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLYLE 160
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 161 WLPVVGNAGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIGLQFG 240
Cdd:PRK15081 161 WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 429132390 241 GLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIR 304
Cdd:PRK15081 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-305 1.41e-81

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 249.29  E-value: 1.41e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390    1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDP--VAIMLGE-QATAERISVLRQQLGLDRPLYVQYGTFLLNALQGDF 77
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPaeDYLRLSHiPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   78 GTSIRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSL 157
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  158 YLEWLPVVGNAGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIGL 237
Cdd:TIGR02789 161 YLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGM 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429132390  238 QFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIRQ 305
Cdd:TIGR02789 241 HIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRR 308
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-304 1.47e-79

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 243.84  E-value: 1.47e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQ---ATAERISVLRQQLGLDRPLYVQYGTFLLNALQGDF 77
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSnlpPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  78 GTSIRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSL 157
Cdd:PRK10352  81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 158 YLEWLPVVGNAGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIGL 237
Cdd:PRK10352 161 YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGM 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 429132390 238 QFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIR 304
Cdd:PRK10352 241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-305 2.60e-74

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 231.62  E-value: 2.60e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQA-TAERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGT 79
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGiSPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  80 SIRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLYL 159
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 160 EWLPVVGNAG-------------------------------LASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTA 208
Cdd:PRK10914 161 NLTPVSGRVSdmvflddsnpltgfmlidtaiwgedgnfidaVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 209 RAKGLLERVVTYKHALRNALIPTVTIIGLQFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLV 288
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320

                        330
                 ....*....|....*..
gi 429132390 289 NLLVDLLYSVLDPRIRQ 305
Cdd:PRK10914 321 NLLVDLLYGVVNPRIRH 337
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-279 1.18e-58

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 190.43  E-value: 1.18e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAimlgeqataerisvlrqqlglDRPLYVQYGTFLLNALQGDFGTS 80
Cdd:COG4168    1 MLIYLLRRLNLLLITLLILSLISFSLLYRDPLNPLS---------------------DASLFSGYLFYLQNLLQGDFGIS 59

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  81 IRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLYLE 160
Cdd:COG4168   60 SINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLG 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 161 WLPVVGN-------------------------------AGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTAR 209
Cdd:COG4168  140 WLPVSGRynllyeippvtgfalidawlsdspyrlkaiqSALQHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAA 219

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 210 AKGLLERVVTYKHALRNALIPTVTIIGLQFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVL 279
Cdd:COG4168  220 TRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVI 289
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-304 1.84e-55

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 181.80  E-value: 1.84e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAimlGEQA-TAERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGT 79
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERTlPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGP 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  80 SIR-SGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLY 158
Cdd:PRK09471  78 SFKyKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAIT 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 159 LEWLPVVG--NAGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIG 236
Cdd:PRK09471 158 LHWLPGGGwnGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMG 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429132390 237 LQFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIR 304
Cdd:PRK09471 238 PAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-279 1.85e-39

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 140.59  E-value: 1.85e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVaimlgeQATAerisvlrqqlgldrpLYVQYGTFLLNALQGDFGTS 80
Cdd:PRK15110   1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPL------QGAS---------------LWDAWVFWFNGLLHWDFGVS 59

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  81 IRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFSLYLE 160
Cdd:PRK15110  60 SINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLG 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 161 WLPVVGN-------------------------------AGLASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTAR 209
Cdd:PRK15110 140 WLPVSGRfdllyevkpvtgfalidawlsdspwrdemimSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAA 219

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 210 AKGLLERVVTYKHALRNALIPTVTIIGLQFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFPMVQAVVL 279
Cdd:PRK15110 220 TRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVM 289
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 1-303 3.43e-36

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 133.00  E-value: 3.43e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLggALMV--ILAISVLTFSMLHLVPGDPV----AIMLGEQATA----------------------------- 45
Cdd:COG4174    1 MGAYILRRL--LLMIptLLGIMLINFVIVQFAPGGPVeqviAQLQGTGGGAtgrisggggdagggaaagggskyrgargl 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  46 --ERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGTSIRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVT 123
Cdd:COG4174   79 dpEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVR 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 124 R-SRFlEFLTTTVPLIGLSMPTFWSGLLMILLFS--LYLEWLPVvgnAGLAS------------------LIMPAIALAL 182
Cdd:COG4174  159 DgSRF-DVWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPL---RGLTSdnwdqlswwgkildylwhLTLPVTAMVI 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 183 PASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVT-----IIGLQFggliGGAVIVESVFARPG 257
Cdd:COG4174  235 GGFATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAgfpaaFIGAFF----TGSLLIETIFSLDG 310

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 429132390 258 LGRLAVNAILTRDFPMVQAVV-LFGAVGyVLVNLLVDLLYSVLDPRI 303
Cdd:COG4174  311 LGLLGFEAVVNRDYPVVFGTLyIFTLIG-LVLKLISDLTYVLVDPRI 356
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-303 2.18e-28

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 112.15  E-value: 2.18e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390   1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPV-----AIMLGEQA-------------------------------- 43
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVdqaiaAIEFGQAGglpgaggegvrashaqtgvgnisdsnyrggrg 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  44 -TAERISVLRQQLGLDRPLYVQYGTFLLNALQGDFGTSIRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAV 122
Cdd:PRK15133  81 lDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 123 TRSRFLEFLTTTVPLIGLSMPTFWSGLLMILLFS--LYLEWLPVVGNAG---------------LASLIMPAIALALPAS 185
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSanfdslpwyqkitdyLWHITLPVLATVIGGF 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 186 AVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTV-----TIIGLQFggliGGAVIVESVFARPGLGR 260
Cdd:PRK15133 241 AALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIagfpaTFISMFF----TGSLLIEVMFSLNGLGL 316

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 429132390 261 LAVNAILTRDFP-MVQAVVLFGAVGyVLVNLLVDLLYSVLDPRI 303
Cdd:PRK15133 317 LGYEATVSRDYPvMFGTLYIFTLIG-LLLNIVSDISYTLVDPRI 359
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-102 5.81e-21

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 85.74  E-value: 5.81e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390    1 MIGFLLRRLGGALMVILAISVLTFSMLHLVPGDPVAIMLGEQATAERISVLRQQLGLDRPLYVQYGTFLLNALQGD---- 76
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdfga 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 429132390   77 --------FGTSIRSGQPVLQEVTRQLPATLILA 102
Cdd:pfam19300  81 vghcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 113-305 4.11e-20

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 85.81  E-value: 4.11e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  113 GILLGTVAAVTRSRFLEFLTTTVPLIGLSMPTFWsgLLMILLFSLYLEWLPvvgnaglaSLIMPAIALALPASAVIARMT 192
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFV--LAILLVVIAILSILG--------HGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  193 RSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIGLQFGGLIGGAVIVESVFARPGLGRLAVNAILTRDFP 272
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 429132390  273 MVQAVVLFGAVGYVLVNLLVDLLYSVLDPRIRQ 305
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 95-284 1.02e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.16  E-value: 1.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  95 LPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVpLIGLSMPTFWSGLLMILLFSLYLEWLpvvgnaGLASLI 174
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRII-DLLLSLPSLVLGLLLVLLFGVLLGWG------ILPGLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 175 MPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIGLQFGGLIGGAVIVESVFA 254
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....
gi 429132390 255 ----RPGLGRLAVNAILTRDFPMVQAVVLFGAVG 284
Cdd:cd06261  154 geapGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 77-243 2.31e-09

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 2.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  77 FGTSiRSGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAVTRSRFLEFLTTTVPLIgLSMPtfwsGLLMILLFS 156
Cdd:COG1173   61 LGTD-QLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVL-LAFP----SLLLAIALV 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390 157 LYLEwlpvvgnaglASLIMPAIALALPASAVIARMTRSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTIIG 236
Cdd:COG1173  135 AVLG----------PGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQAT 204


                 ....*..
gi 429132390 237 LQFGGLI 243
Cdd:COG1173  205 LGIASAI 211
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 83-235 9.61e-03

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 37.27  E-value: 9.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429132390  83 SGQPVLQEVTRQLPATLILALSAVAIAAPLGILLGTVAAvtrsrfleFLTTTVPLIGLSMPTFWSGLLMILLFSLylewl 162
Cdd:PRK15021 128 NGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQG--------YYGGKVDLWGQRFIEVWSGMPTLFLIIL----- 194

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429132390 163 pvvgnagLASLIMPAIALALPASAVIARMT-----RSTLAEVLGQDYVRTARAKGLLERVVTYKHALRNALIPTVTII 235
Cdd:PRK15021 195 -------LSSVVQPNFWWLLAITVLFGWMSlvgvvRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFL 265
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH