|
Name |
Accession |
Description |
Interval |
E-value |
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-234 |
3.10e-135 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 379.33 E-value: 3.10e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMGTYRRAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:COG0410 83 VPEGRRIFPSLTVEENLLLGAYARRDRAEVRADLERVYELFPRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 161 PSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYLGI 234
Cdd:COG0410 163 PSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAYLGV 236
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-224 |
2.18e-118 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 336.33 E-value: 2.18e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILI 81
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMGTYRRAARAAQEsRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKA-RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:cd03224 160 SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-233 |
1.60e-86 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 256.34 E-value: 1.60e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMGTYRrAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAMGGFF-AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 161 PSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYLG 233
Cdd:PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
2-230 |
2.64e-74 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 224.71 E-value: 2.64e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILI 81
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMGTyrrAARAAQESRM-EEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTGL---AALPRRSRKIpDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 161 PSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEAlLNNDHVRRA 230
Cdd:TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAeGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE-LDEDKVRRY 227
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-233 |
2.85e-62 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 194.48 E-value: 2.85e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVREN----LQMgtyRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:COG1137 83 LPQEASIFRKLTVEDNilavLEL---RKLSKKEREERLEELLEEF-GITHLRKSKAYSLSGGERRRVEIARALATNPKFI 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYLG 233
Cdd:COG1137 159 LLDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPLVRKVYLG 235
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-233 |
8.09e-62 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 194.10 E-value: 8.09e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIil 80
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGI-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 ipeGR-----QLFPDMTVRENLQMG-----------------TYRRAARAAQEsRMEEVLELFpRVRERLDQTASSLSGG 138
Cdd:COG0411 82 ---ARtfqnpRLFPELTVLENVLVAaharlgrgllaallrlpRARREEREARE-RAEELLERV-GLADRADEPAGNLSYG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 139 EQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQN---VFttlKVANRGYVLENGRVVL 214
Cdd:COG0411 157 QQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDeRGITILLIEHDmdlVM---GLADRIVVLDFGRVIA 233
|
250
....*....|....*....
gi 597799979 215 ADSSEALLNNDHVRRAYLG 233
Cdd:COG0411 234 EGTPAEVRADPRVIEAYLG 252
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-233 |
1.58e-61 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 192.37 E-value: 1.58e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILI 81
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:cd03218 81 PQEASIFRKLTVEENILAVlEIRGLSKKEREEKLEELLEEF-HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 161 PSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYLG 233
Cdd:cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
2-233 |
3.50e-61 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 191.72 E-value: 3.50e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILI 81
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQ--MGTYRRAARAAQESRMEEVLELFPRVRERlDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:TIGR04406 82 PQEASIFRKLTVEENIMavLEIRKDLDRAEREERLEALLEEFQISHLR-DNKAMSLSGGERRRVEIARALATNPKFILLD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYLG 233
Cdd:TIGR04406 161 EPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVYLG 234
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-227 |
1.67e-59 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 187.26 E-value: 1.67e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIili 81
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 peGR-----QLFPDMTVRENLQMG-----------TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAI 145
Cdd:cd03219 78 --GRtfqipRLFPELTVLENVMVAaqartgsglllARARREEREARERAEELLERV-GLADLADRPAGELSYGQQRRLEI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 146 ARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
..
gi 597799979 226 HV 227
Cdd:cd03219 235 RV 236
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-223 |
2.55e-57 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 181.80 E-value: 2.55e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevVDRGIILI 81
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAE--VRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQ-MGTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:COG1131 79 PQEPALYPDLTVRENLRfFARLYGLPRKEARERIDELLELF-GLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 161 PSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLN 223
Cdd:COG1131 158 PTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-224 |
1.72e-52 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 169.65 E-value: 1.72e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevVDRGIIL 80
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPRE--ARRQIGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQM-GTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:COG4555 79 LPDERGLYDRLTVRENIRYfAELYGLFDEELKKRIEELIELL-GLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:COG4555 158 EPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREE 222
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-226 |
8.84e-52 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 167.85 E-value: 8.84e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdrgiil 80
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKE-------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQ----------LFPDMTVREN----LQMgtYRRAARAAQESRMEEVLELFprvreRLDQTA----SSLSGGEQQM 142
Cdd:COG1127 77 LYELRRrigmlfqggaLFDSLTVFENvafpLRE--HTDLSEAEIRELVLEKLELV-----GLPGAAdkmpSELSGGMRKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 143 VAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEAL 221
Cdd:COG1127 150 VALARALALDPEILLYDEPTAGLDPITSAVIDELIRELrDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEEL 229
|
....*
gi 597799979 222 LNNDH 226
Cdd:COG1127 230 LASDD 234
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
4-226 |
3.55e-50 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 163.44 E-value: 3.55e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHE--VVDRGIILI 81
Cdd:cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAElyRLRRRMGML 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMGTYRRAARAAQESRmEEVLELFPRV--RERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:cd03261 83 FQSGALFDSLTVFENVAFPLREHTRLSEEEIR-EIVLEKLEAVglRGAEDLYPAELSGGMKKRVALARALALDPELLLYD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDH 226
Cdd:cd03261 162 EPTAGLDPIASGVIDDLIRSLkKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD 229
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-231 |
3.64e-50 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 163.72 E-value: 3.64e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITH-------LPAHEV 73
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRarrrigyVPQRAE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 74 VDRGiilipegrqlFPdMTVRENLQMGTYR-----RAARAAQESRMEEVLElfpRV--RERLDQTASSLSGGEQQMVAIA 146
Cdd:COG1121 86 VDWD----------FP-ITVRDVVLMGRYGrrglfRRPSRADREAVDEALE---RVglEDLADRPIGELSGGQQQRVLLA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 147 RGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLeNGRVVLADSSEALLNNDH 226
Cdd:COG1121 152 RALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVLTPEN 230
|
....*
gi 597799979 227 VRRAY 231
Cdd:COG1121 231 LSRAY 235
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-231 |
1.15e-48 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 160.21 E-value: 1.15e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIIL 80
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARR-IAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMGTYRRAARAAQESR-----MEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRI 155
Cdd:COG1120 80 VPQEPPAPFGLTVRELVALGRYPHLGLFGRPSAedreaVEEALERT-GLEHLADRPVDELSGGERQRVLIARALAQEPPL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 156 LMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAY 231
Cdd:COG1120 159 LLLDEPTSHLDLAHQLEVLELLRRLARErGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVY 235
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-233 |
1.15e-48 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 160.06 E-value: 1.15e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILI 81
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQ--MGTYRRAARAAQESRMEEVLELFPRVRERlDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:PRK10895 84 PQEASIFRRLSVYDNLMavLQIRDDLSAEQREDRANELMEEFHIEHLR-DSMGQSLSGGERRRVEIARALAANPKFILLD 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYLG 233
Cdd:PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLG 236
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-213 |
3.67e-48 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 157.68 E-value: 3.67e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdRGIILI 81
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER---RNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMGTYRRA-ARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGLKLRGvPKAEIRARVRELLELV-GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 597799979 161 PSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03259 157 PLSALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-224 |
2.19e-47 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 156.31 E-value: 2.19e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevvdrgiil 80
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKD--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQ----------LFPDMTVRENLQMG--TYRRAARAAQESRMEEVLElfpRV--RERLDQTASSLSGGEQQMVAIA 146
Cdd:COG1126 72 INKLRRkvgmvfqqfnLFPHLTVLENVTLApiKVKKMSKAEAEERAMELLE---RVglADKADAYPAQLSGGQQQRVAIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 147 RGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVeqnvftT------LKVANRGYVLENGRVVLADSSEA 220
Cdd:COG1126 149 RALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVV------ThemgfaREVADRVVFMDGGRIVEEGPPEE 222
|
....
gi 597799979 221 LLNN 224
Cdd:COG1126 223 FFEN 226
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-212 |
8.62e-47 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 152.94 E-value: 8.62e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIThlPAHEVVDRGIILI 81
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK--KEPEEVKRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQmgtyrraaraaqesrmeevlelfprvrerldqtassLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:cd03230 79 PEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEP 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:cd03230 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-224 |
7.36e-46 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 152.10 E-value: 7.36e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRAT-ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIIL 80
Cdd:COG1122 1 IELENLSFSYPGGTpALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRK-VGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 I---PEgRQLFpDMTVRENL-----QMGTYRRAARAaqesRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIArGMMA- 151
Cdd:COG1122 80 VfqnPD-DQLF-APTVEEDVafgpeNLGLPREEIRE----RVEEALELV-GLEHLADRPPHELSGGQKQRVAIA-GVLAm 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 152 NPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:COG1122 152 EPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSD 224
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
4-211 |
3.80e-45 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 149.92 E-value: 3.80e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRAT--ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-GIIL 80
Cdd:cd03225 2 LKNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKvGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 I-PEgRQLFPDmTVRE-------NLQMgtyrraARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIArGMMA- 151
Cdd:cd03225 82 QnPD-DQFFGP-TVEEevafgleNLGL------PEEEIEERVEEALELV-GLEGLRDRSPFTLSGGQKQRVAIA-GVLAm 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 152 NPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGR 211
Cdd:cd03225 152 DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-161 |
1.01e-44 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 152.94 E-value: 1.01e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdRGIIL 80
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK---RNVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVREN----LQMgtyRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:COG3842 82 VFQDYALFPHLTVAENvafgLRM---RGVPKAEIRARVAELLELV-GLEGLADRYPHQLSGGQQQRVALARALAPEPRVL 157
|
....*
gi 597799979 157 MFDEP 161
Cdd:COG3842 158 LLDEP 162
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-213 |
8.36e-44 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 146.52 E-value: 8.36e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIT-------HLPAHEVVDR 76
Cdd:cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEkerkrigYVPQRRSIDR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 GiilipegrqlFPdMTVRENLQMGTYRR--AARAAQESRMEEVLELFPRV--RERLDQTASSLSGGEQQMVAIARGMMAN 152
Cdd:cd03235 82 D----------FP-ISVRDVVLMGLYGHkgLFRRLSKADKAKVDEALERVglSELADRQIGELSGGQQQRVLLARALVQD 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 153 PRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRgYVLENGRVV 213
Cdd:cd03235 151 PDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVV 210
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-161 |
5.53e-43 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 142.40 E-value: 5.53e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPaHEVVDRGIILIPEGRQLFPDMTVREN 96
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDE-RKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 97 LQMGTYRRA-ARAAQESRMEEVLELFPRV---RERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:pfam00005 80 LRLGLLLKGlSKREKDARAEEALEKLGLGdlaDRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-231 |
1.71e-42 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 144.04 E-value: 1.71e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEV--VDRG 77
Cdd:COG3638 2 MLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALrrLRRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQLFPDMTVRENLQMGT--YRRAARA-----AQESRmEEVLELFPRV--RERLDQTASSLSGGEQQMVAIARG 148
Cdd:COG3638 82 IGMIFQQFNLVPRLSVLTNVLAGRlgRTSTWRSllglfPPEDR-ERALEALERVglADKAYQRADQLSGGQQQRVAIARA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 149 MMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEAlLNNDHV 227
Cdd:COG3638 161 LVQEPKLILADEPVASLDPKTARQVMDLLRRIAREdGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAE-LTDAVL 239
|
....
gi 597799979 228 RRAY 231
Cdd:COG3638 240 REIY 243
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-212 |
2.07e-42 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 143.05 E-value: 2.07e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAH-EVVDRGIIL 80
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNiNELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMG--TYRRAARAAQESRMEEVLElfpRVR--ERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLApiKVKGMSKAEAEERALELLE---KVGlaDKADAYPAQLSGGQQQRVAIARALAMNPKVM 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-212 |
2.51e-42 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 142.65 E-value: 2.51e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVdRGIILI 81
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWR-RQVAYV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDmTVRENLQMgTYRRAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:COG4619 80 PQEPALWGG-TVRDNLPF-PFQLRERKFDRERALELLERLGLPPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 162 SLGLAPIVVSQVFDVVRK-IAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:COG4619 158 TSALDPENTRRVEELLREyLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-211 |
3.82e-42 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 141.17 E-value: 3.82e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPA-HEVVDRGIIL 80
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDeLPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMGtyrraaraaqesrmeevlelfprvrerldqtassLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 161 PSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGR 211
Cdd:cd03229 127 PTSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-188 |
5.72e-42 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 144.10 E-value: 5.72e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAhevvdRGIIL 80
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPEDR-----RRIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQ-MGTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:COG4152 76 LPEERGLYPKMKVGEQLVyLARLKGLSKAEAKRRADEWLERL-GLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILD 154
|
170 180
....*....|....*....|....*....
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVL 188
Cdd:COG4152 155 EPFSGLDPVNVELLKDVIRELAAKGTTVI 183
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-224 |
6.95e-42 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 148.51 E-value: 6.95e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGY-----GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD 75
Cdd:COG1123 260 LLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 --RGIILI---PEGrQLFPDMTVRENLQMG--TYRRAARAAQESRMEEVLE---LFPRVRERLdqtASSLSGGEQQMVAI 145
Cdd:COG1123 340 lrRRVQMVfqdPYS-SLNPRMTVGDIIAEPlrLHGLLSRAERRERVAELLErvgLPPDLADRY---PHELSGGQRQRVAI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 146 ARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:COG1123 416 ARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQReLGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFAN 495
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-213 |
7.86e-42 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 141.73 E-value: 7.86e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGR-ATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD--RG 77
Cdd:COG2884 1 MIRFENVSKRYPGgREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYlrRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQLFPDMTVRENLQ-----MGTYRRAARAaqesRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMAN 152
Cdd:COG2884 81 IGVVFQDFRLLPDRTVYENVAlplrvTGKSRKEIRR----RVREVLDLV-GLSDKAKALPHELSGGEQQRVAIARALVNR 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 153 PRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIV--EQNVFTTLKvaNRGYVLENGRVV 213
Cdd:COG2884 156 PELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIAthDLELVDRMP--KRVLELEDGRLV 216
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-213 |
1.16e-41 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 147.86 E-value: 1.16e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:COG1129 4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAGIAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMGTYRRAA----RAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:COG1129 84 IHQELNLVPNLSVAENIFLGREPRRGglidWRAMRRRARELLARL-GLDIDPDTPVGDLSVAQQQLVEIARALSRDARVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIV-----EqnVFttlKVANRGYVLENGRVV 213
Cdd:COG1129 163 ILDEPTASLTEREVERLFRIIRRLKAQGVAIIYIshrldE--VF---EIADRVTVLRDGRLV 219
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
20-233 |
1.28e-41 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 142.05 E-value: 1.28e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 20 VSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQLFPDMTVRENL-- 97
Cdd:PRK11300 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLlv 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 98 ----QMGT-----------YRRAARAAQEsRMEEVLElfpRV--RERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:PRK11300 104 aqhqQLKTglfsgllktpaFRRAESEALD-RAATWLE---RVglLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 161 PSLGLAP---IVVSQVFDVVRKiaATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYLG 233
Cdd:PRK11300 180 PAAGLNPketKELDELIAELRN--EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPDVIKAYLG 253
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-161 |
1.89e-41 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 144.45 E-value: 1.89e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevvDRGIIL 80
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPK---DRNIAM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:COG3839 80 VFQSYALYPHMTVYENIAFPlKLRKVPKAEIDRRVREAAELL-GLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLD 158
|
..
gi 597799979 160 EP 161
Cdd:COG3839 159 EP 160
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-213 |
2.74e-41 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 140.56 E-value: 2.74e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHV----DAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD- 75
Cdd:COG1136 4 LLELRNLtksyGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELARl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 R----GIILipegrQ---LFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIAR 147
Cdd:COG1136 84 RrrhiGFVF-----QffnLLPELTALENVALPlLLAGVSRKERRERARELLERV-GLGDRLDHRPSQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 148 GMMANPRILMFDEP--SL----GlapivvSQVFDVVRKIAA-TGTTVLIV--EQNVfttLKVANRGYVLENGRVV 213
Cdd:COG1136 158 ALVNRPKLILADEPtgNLdsktG------EEVLELLRELNReLGTTIVMVthDPEL---AARADRVIRLRDGRIV 223
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-215 |
7.70e-41 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 138.95 E-value: 7.70e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdrgIILI 81
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR-----IGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENL----QMGTYRRAARAAQESRMEEVLELFPRVRERLDQtassLSGGEQQMVAIARGMMANPRILM 157
Cdd:cd03269 76 PEERGLYPKMKVIDQLvylaQLKGLKKEEARRRIDEWLERLELSEYANKRVEE----LSKGNQQKVQFIAAVIHDPELLI 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 158 FDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLA 215
Cdd:cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-213 |
1.38e-40 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 138.79 E-value: 1.38e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGY----GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR 76
Cdd:cd03257 1 LLEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 G--IILIPE--GRQLFPDMTVRENLQ---MGTYRRAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGM 149
Cdd:cd03257 81 RkeIQMVFQdpMSSLNPRMTIGEQIAeplRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 150 MANPRILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEeLGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-231 |
2.28e-40 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 138.47 E-value: 2.28e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRAT-ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEV--VDRGI 78
Cdd:cd03256 1 IEVENLSKTYPNGKkALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALrqLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPEGRQLFPDMTVRENL------QMGTYRRAARAAQESRMEEVLELFPRV--RERLDQTASSLSGGEQQMVAIARGMM 150
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVlsgrlgRRSTWRSLFGLFPKEEKQRALAALERVglLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 151 ANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLaDSSEALLNNDHVRR 229
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAELTDEVLDE 239
|
..
gi 597799979 230 AY 231
Cdd:cd03256 240 IY 241
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-213 |
2.61e-40 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 137.39 E-value: 2.61e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevvDRGIILI 81
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK---DRDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGlKLRKVPKDEIDERVREVAELL-QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 597799979 161 PSLGL-APIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03301 157 PLSNLdAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
17-213 |
3.52e-40 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 137.85 E-value: 3.52e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdRGIILIPEGRQLFPDMTVREN 96
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK---RDISYVPQNYALFPHMTVYKN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFD 175
Cdd:cd03299 92 IAYGlKKRKVDKKEIERKVLEIAEML-GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLRE 170
|
170 180 190
....*....|....*....|....*....|....*....
gi 597799979 176 VVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03299 171 ELKKIrKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-214 |
7.39e-40 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 136.19 E-value: 7.39e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLpaHEVVDR-GIIL 80
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRiGALI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 ipEGRQLFPDMTVRENLqmgtyRRAARAAQ--ESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMF 158
Cdd:cd03268 79 --EAPGFYPNLTARENL-----RLLARLLGirKKRIDEVLDVV-GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 159 DEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVL 214
Cdd:cd03268 151 DEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-211 |
9.67e-40 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 134.29 E-value: 9.67e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 3 TLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIILIP 82
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRR-IGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 EgrqlfpdmtvrenlqmgtyrraaraaqesrmeevlelfprvrerldqtassLSGGEQQMVAIARGMMANPRILMFDEPS 162
Cdd:cd00267 80 Q---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT 108
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 597799979 163 LGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGR 211
Cdd:cd00267 109 SGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-190 |
4.96e-39 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 134.15 E-value: 4.96e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRA----TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD-- 75
Cdd:cd03255 1 IELKNLSKTYGGGgekvQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAfr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 -RGIILIPEGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANP 153
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENVELPlLLAGVPKKERRERAEELLERV-GLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIV 190
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKeAGTTIVVV 197
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-213 |
5.02e-39 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 134.42 E-value: 5.02e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGY----GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevVDR 76
Cdd:cd03266 1 MITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAE--ARR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 GIILIPEGRQLFPDMTVRENLQ-MGTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRI 155
Cdd:cd03266 79 RLGFVSDSTGLYDRLTARENLEyFAGLYGLKGDELTARLEELADRL-GMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 156 LMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-161 |
5.50e-39 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 134.67 E-value: 5.50e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdRGIILI 81
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK---RPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:cd03300 78 FQNYALFPHLTVFENIAFGlRLKKLPKAEIKERVAEALDLV-QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156
|
.
gi 597799979 161 P 161
Cdd:cd03300 157 P 157
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-189 |
2.12e-38 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 132.22 E-value: 2.12e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevVDRGIIL 80
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARED--YRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMgtYRRA-ARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:COG4133 80 LGHADGLKPELTVRENLRF--WAALyGLRADREAIDEALEAV-GLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
|
170 180 190
....*....|....*....|....*....|
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLI 189
Cdd:COG4133 157 EPFTALDAAGVALLAELIAAHLARGGAVLL 186
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-223 |
3.92e-38 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 133.00 E-value: 3.92e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYG----RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHlPAHEVVDR 76
Cdd:COG1124 1 MLEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTR-RRRKAFRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 GIILI---PEGrQLFPDMTVRENLqMGTYRRAARAAQESRMEEVLE---LFPRVRERLdqtASSLSGGEQQMVAIARGMM 150
Cdd:COG1124 80 RVQMVfqdPYA-SLHPRHTVDRIL-AEPLRIHGLPDREERIAELLEqvgLPPSFLDRY---PHQLSGGQRQRVAIARALI 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 151 ANPRILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLN 223
Cdd:COG1124 155 LEPELLLLDEPTSALDVSVQAEILNLLKDLrEERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-231 |
4.38e-38 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 132.93 E-value: 4.38e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 iPEGRQL-FPdMTVRENLQMGTYRRAARAAQESR-MEEVLElfpRV-----RERLDQTassLSGGEQQMVAIAR------ 147
Cdd:COG4559 81 -PQHSSLaFP-FTVEEVVALGRAPHGSSAAQDRQiVREALA---LVglahlAGRSYQT---LSGGEQQRVQLARvlaqlw 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 148 -GMMANPRILMFDEP--SLGLAPivVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:COG4559 153 ePVDGGPRWLFLDEPtsALDLAH--QHAVLRLARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTD 230
|
....*..
gi 597799979 225 DHVRRAY 231
Cdd:COG4559 231 ELLERVY 237
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-233 |
4.72e-38 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 132.55 E-value: 4.72e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIilipeGRQ-----LFPDM 91
Cdd:COG4674 26 LNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLGI-----GRKfqkptVFEEL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 92 TVRENLQM---------GTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPS 162
Cdd:COG4674 101 TVFENLELalkgdrgvfASLFARLTAEERDRIEEVLETI-GLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLLLDEPV 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 163 LGLAPIVVSQVFDVVRKIAATgTTVLIVEQNVFTTLKVANRGYVLENGRvVLADSS-EALLNNDHVRRAYLG 233
Cdd:COG4674 180 AGMTDAETERTAELLKSLAGK-HSVVVVEHDMEFVRQIARKVTVLHQGS-VLAEGSlDEVQADPRVIEVYLG 249
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-211 |
7.67e-38 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 129.81 E-value: 7.67e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYG--RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgII 79
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-IA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFpDMTVRENLqmgtyrraaraaqesrmeevlelfprvrerldqtassLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:cd03228 80 YVPQDPFLF-SGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAAtGTTVLIVEQNVfTTLKVANRGYVLENGR 211
Cdd:cd03228 122 EATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRDADRIIVLDDGR 171
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-224 |
1.17e-37 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 134.12 E-value: 1.17e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDI-THLPAHEvvdRGIIL 80
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLfTNLPPRE---RRVGF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFprvreRLDQTA----SSLSGGEQQMVAIARGMMANPRI 155
Cdd:COG1118 80 VFQHYALFPHMTVAENIAFGlRVRPPSKAEIRARVEELLELV-----QLEGLAdrypSQLSGGQRQRVALARALAVEPEV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 156 LMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:COG1118 155 LLLDEPFGALDAKVRKELRRWLRRLhDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDR 224
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-225 |
2.06e-37 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 138.43 E-value: 2.06e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRAT--ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVvdRGII 79
Cdd:COG2274 474 IELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASL--RRQI 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 -LIPEGRQLFPDmTVRENLQMG----TYRRAARAAQESRMEEVLELFP-----RVRERldqtASSLSGGEQQMVAIARGM 149
Cdd:COG2274 552 gVVLQDVFLFSG-TIRENITLGdpdaTDEEIIEAARLAGLHDFIEALPmgydtVVGEG----GSNLSGGQRQRLAIARAL 626
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 150 MANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAtGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:COG2274 627 LRNPRILILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRL-STIRLADRIIVLDKGRIVEDGTHEELLARK 700
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
10-213 |
5.51e-37 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 135.15 E-value: 5.51e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQ--- 86
Cdd:COG1129 261 GLSVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGIAYVPEDRKgeg 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 87 LFPDMTVRENLQMGTYRRAAR------AAQESRMEEVLELFpRVR-ERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:COG1129 341 LVLDLSIRENITLASLDRLSRgglldrRRERALAEEYIKRL-RIKtPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILD 419
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 160 EPSLGlapIVV---SQVFDVVRKIAATGTTVLIV-----EqnvftTLKVANRGYVLENGRVV 213
Cdd:COG1129 420 EPTRG---IDVgakAEIYRLIRELAAEGKAVIVIsselpE-----LLGLSDRILVMREGRIV 473
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-213 |
6.61e-37 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 129.22 E-value: 6.61e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTI-----VGQIQPRAGKITFLGEDITHLPAHEV-VD 75
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLnrlndLIPGAPDEGEVLLDGKDIYDLDVDVLeLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 RGIILIPEGRQLFPdMTVRENLQMG--TYRRAARAAQESRMEEVLE---LFPRVRERLDqtASSLSGGEQQMVAIARGMM 150
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGlrLHGIKLKEELDERVEEALRkaaLWDEVKDRLH--ALGLSGGQQQRLCLARALA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 151 ANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATgTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
17-212 |
7.15e-37 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 127.55 E-value: 7.15e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPDMTV 93
Cdd:cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKregLVLDLSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 94 RENLQMGtyrraaraaqesrmeevlelfprvrerldqtaSSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQV 173
Cdd:cd03215 96 AENIALS--------------------------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143
|
170 180 190
....*....|....*....|....*....|....*....
gi 597799979 174 FDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:cd03215 144 YRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-226 |
8.77e-37 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 129.34 E-value: 8.77e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvVDRGIIL 80
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE-LRRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVREN----LQMGTYRRAARAAQESRMEEVLELFPrvRERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:cd03295 80 VIQQIGLFPHMTVEENialvPKLLKWPKEKIRERADELLALVGLDP--AEFADRYPHELSGGQQQRVGVARALAADPPLL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDH 226
Cdd:cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-213 |
8.20e-36 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 124.86 E-value: 8.20e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 3 TLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdrgiilip 82
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 egrqlfpdmtvrenlqmgtyrraaRAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPS 162
Cdd:cd03214 71 ------------------------LARKIAYVPQALELL-GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 163 LGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03214 126 SHLDIAHQIELLELLRRLAReRGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
4-213 |
1.41e-35 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 126.28 E-value: 1.41e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGE--DITHLPAHEVVD---RGI 78
Cdd:COG4161 5 LKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEKAIRllrQKV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPEGRQLFPDMTVRENLQMGTYRRAARAAQESRmEEVLELFPRVR--ERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:COG4161 85 GMVFQQYNLWPHLTVMENLIEAPCKVLGLSKEQAR-EKAMKLLARLRltDKADRFPLHLSGGQQQRVAIARALMMEPQVL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:COG4161 164 LFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRII 220
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-225 |
1.43e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 132.19 E-value: 1.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIIL 80
Cdd:COG4988 337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQ-IAW 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDmTVRENLQMGtyRRAA------RAAQESRMEEVLELFPR-VRERLDQTASSLSGGEQQMVAIARGMMANP 153
Cdd:COG4988 416 VPQNPYLFAG-TIRENLRLG--RPDAsdeeleAALEAAGLDEFVAALPDgLDTPLGEGGRGLSGGQAQRLALARALLRDA 492
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKIAAtGTTVLIVeqnvfT----TLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:COG4988 493 PLLLLDEPTAHLDAETEAEILQALRRLAK-GRTVILI-----ThrlaLLAQADRILVLDDGRIVEQGTHEELLAKN 562
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
1-211 |
2.06e-35 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 125.05 E-value: 2.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRAT-ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEV--VDRG 77
Cdd:TIGR02673 1 MIEFHNVSKAYPGGVaALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLplLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQLFPDMTVRENLQMGTY-RRAARAAQESRMEEVLELFPrVRERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEvRGKKEREIQRRVGAALRQVG-LEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGR 211
Cdd:TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-213 |
2.72e-35 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 124.29 E-value: 2.72e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 3 TLEHVDAGYGRAT-ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIthlPAHEVVDRGIILI 81
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KAKERRKSIGYVM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PE-GRQLFPDmTVRENLQMGTYRRAARAAQESRMEEVLELFpRVRERLDQtasSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:cd03226 78 QDvDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPL---SLSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 597799979 161 PSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03226 153 PTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
4-213 |
2.76e-35 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 125.51 E-value: 2.76e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGE--DITHLPAhevvDRGIILI 81
Cdd:PRK11124 5 LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTPS----DKAIREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 pegRQ----------LFPDMTVRENLQMGTYRRAARAAQESrMEEVLELFPRVR--ERLDQTASSLSGGEQQMVAIARGM 149
Cdd:PRK11124 81 ---RRnvgmvfqqynLWPHLTVQQNLIEAPCRVLGLSKDQA-LARAEKLLERLRlkPYADRFPLHLSGGQQQRVAIARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 150 MANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-213 |
3.06e-35 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 125.59 E-value: 3.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGY----GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAhevvDR 76
Cdd:COG1116 7 ALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGP----DR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 GIILipegrQ---LFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFprvreRLDQTASS----LSGGEQQMVAIARG 148
Cdd:COG1116 83 GVVF-----QepaLLPWLTVLDNVALGlELRGVPKAERRERARELLELV-----GLAGFEDAyphqLSGGMRQRVAIARA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 149 MMANPRILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLEN--GRVV 213
Cdd:COG1116 153 LANDPEVLLMDEPFGALDALTRERLQDELLRLwQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIV 220
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
6-224 |
5.04e-35 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 130.02 E-value: 5.04e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 6 HVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA---GKITFLGEDITHLPAHEVVDR-GIILI 81
Cdd:COG1123 11 SVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEALRGRRiGMVFQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPdMTVRENLQMGTyrRAARAAQESRMEEVLELFPRVR--ERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:COG1123 91 DPMTQLNP-VTVGDQIAEAL--ENLGLSRAEARARVLELLEAVGleRRLDRYPHQLSGGQRQRVAIAMALALDPDLLIAD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:COG1123 168 EPTTALDVTTQAEILDLLRELQReRGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-213 |
5.37e-35 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 122.15 E-value: 5.37e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILI 81
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEgrqlfpdmtvrenlqmgtyrraaraaqesrmeevlelfprvrerldqtassLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:cd03216 81 YQ---------------------------------------------------LSVGERQMVEIARALARNARLLILDEP 109
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03216 110 TAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-224 |
8.15e-35 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 124.05 E-value: 8.15e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIThlpAHEVVDRGIil 80
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN---DPKVDERLI-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 ipegRQ----------LFPDMTVRENLQMG--TYRRAARAAQEsrmEEVLELFPRV--RERLDQTASSLSGGEQQMVAIA 146
Cdd:PRK09493 76 ----RQeagmvfqqfyLFPHLTALENVMFGplRVRGASKEEAE---KQARELLAKVglAERAHHYPSELSGGQQQRVAIA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 147 RGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-231 |
8.47e-35 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 124.43 E-value: 8.47e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGK-ITFLGEDithlpahevvdRGII 79
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdVRLFGER-----------RGGE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLF------------PDMTVRENL------QMGTYRRAArAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQ 141
Cdd:COG1119 72 DVWELRKRIglvspalqlrfpRDETVLDVVlsgffdSIGLYREPT-DEQRERARELLELL-GLAHLADRPFGTLSQGEQR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 142 MVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLI-----VEQ--NVFTtlkvanRGYVLENGRVVL 214
Cdd:COG1119 150 RVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVlvthhVEEipPGIT------HVLLLKDGRVVA 223
|
250
....*....|....*..
gi 597799979 215 ADSSEALLNNDHVRRAY 231
Cdd:COG1119 224 AGPKEEVLTSENLSEAF 240
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-231 |
1.26e-34 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 129.50 E-value: 1.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY--GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgII 79
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRR-IA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFpDMTVRENLQMgtyrrAARAAQESRMEEVLE------LFPRVRERLD----QTASSLSGGEQQMVAIARGM 149
Cdd:COG4987 413 VVPQRPHLF-DTTLRENLRL-----ARPDATDEELWAALErvglgdWLAALPDGLDtwlgEGGRRLSGGERRRLALARAL 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 150 MANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENGRVVLADSSEALL-NNDHVR 228
Cdd:COG4987 487 LRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHR--LAGLERMDRILVLEDGRIVEQGTHEELLaQNGRYR 564
|
...
gi 597799979 229 RAY 231
Cdd:COG4987 565 QLY 567
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-234 |
2.40e-34 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 122.56 E-value: 2.40e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATIlqDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdRGI-I 79
Cdd:COG3840 1 MLRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE---RPVsM 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGrQLFPDMTVRENLQMGtyRRAA---RAAQESRMEEVLElfpRV--RERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:COG3840 76 LFQEN-NLFPHLTVAQNIGLG--LRPGlklTAEQRAQVEQALE---RVglAGLLDRLPGQLSGGQRQRVALARCLVRKRP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 155 ILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALL--NNDHVRRAY 231
Cdd:COG3840 150 ILLLDEPFSALDPALRQEMLDLVDELCReRGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLdgEPPPALAAY 229
|
...
gi 597799979 232 LGI 234
Cdd:COG3840 230 LGI 232
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-224 |
5.75e-34 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 121.53 E-value: 5.75e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHV----DAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD- 75
Cdd:cd03258 1 MIELKNVskvfGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 -RGIILIPEGRQLFPDMTVREN----LQMGtyrRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMM 150
Cdd:cd03258 81 rRRIGMIFQHFNLLSSRTVFENvalpLEIA---GVPKAEIEERVLELLELV-GLEDKADAYPAQLSGGQKQRVGIARALA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 151 ANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-213 |
6.48e-34 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 121.04 E-value: 6.48e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRA----TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAhevvDRG 77
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGP----DRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILipegrQ---LFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANP 153
Cdd:cd03293 77 YVF-----QqdaLLPWLTVLDNVALGlELQGVPKAEARERAEELLELV-GLSGFENAYPHQLSGGMRQRVALARALAVDP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLEN--GRVV 213
Cdd:cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIV 213
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-212 |
7.32e-34 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 121.68 E-value: 7.32e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdRGIILI 81
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---RNVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMG-----TYRRAARAAQESRMEEVLELFprvreRLDQTA----SSLSGGEQQMVAIARGMMAN 152
Cdd:cd03296 80 FQHYALFRHMTVFDNVAFGlrvkpRSERPPEAEIRAKVHELLKLV-----QLDWLAdrypAQLSGGQRQRVALARALAVE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 153 PRILMFDEPSLGLAPIVVSQVFDVVRKIA-ATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHdELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-222 |
2.27e-33 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 122.22 E-value: 2.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIilI 81
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV--V 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQM-GTYRRAARAAQESRMEEVLElFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:PRK13537 86 PQFDNLDPDFTVRENLLVfGRYFGLSAAAARALVPPLLE-FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 161 PSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-225 |
4.54e-33 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 125.28 E-value: 4.54e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRAT-ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVvdRGII- 79
Cdd:COG1132 340 IEFENVSFSYPGDRpVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESL--RRQIg 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFpDMTVRENLQMGTY-------RRAARAAQesrMEEVLELFP-----RVRERldqtASSLSGGEQQMVAIAR 147
Cdd:COG1132 418 VVPQDTFLF-SGTIRENIRYGRPdatdeevEEAAKAAQ---AHEFIEALPdgydtVVGER----GVNLSGGQRQRIAIAR 489
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 148 GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAtGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:COG1132 490 ALLKDPPILILDEATSALDTETEALIQEALERLMK-GRTTIVIAHRL-STIRNADRILVLDDGRIVEQGTHEELLARG 565
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
17-213 |
8.62e-33 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 118.17 E-value: 8.62e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVK---EGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLG------EDITHLPAHevvDRGIILIPEGRQL 87
Cdd:cd03297 10 LPDFTLKIDfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdsRKKINLPPQ---QRKIGLVFQQYAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 88 FPDMTVRENLQMGtYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAP 167
Cdd:cd03297 87 FPHLNVRENLAFG-LKRKRNREDRISVDELLDLL-GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDR 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 597799979 168 IVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03297 165 ALRLQLLPELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-221 |
1.61e-32 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 117.47 E-value: 1.61e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 5 EHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevVDRGIILIPEG 84
Cdd:cd03265 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE--VRRRIGIVFQD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 85 RQLFPDMTVRENLQM-GTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSL 163
Cdd:cd03265 82 LSVDDELTGWENLYIhARLYGVPGAERRERIDELLDFV-GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 164 GLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEAL 221
Cdd:cd03265 161 GLDPQTRAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-231 |
1.02e-31 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 116.41 E-value: 1.02e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 iPEGRQL-FPdMTVRENLQMGTYRRAARAAQESR-----MEEV--LELfprvRERLDQTassLSGGEQQMVAIARGMM-- 150
Cdd:PRK13548 82 -PQHSSLsFP-FTVEEVVAMGRAPHGLSRAEDDAlvaaaLAQVdlAHL----AGRDYPQ---LSGGEQQRVQLARVLAql 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 151 ----ANPRILMFDEP--SLGLApivvSQ--VFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEAL 221
Cdd:PRK13548 153 wepdGPPRWLLLDEPtsALDLA----HQhhVLRLARQLAHErGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228
|
250
....*....|
gi 597799979 222 LNNDHVRRAY 231
Cdd:PRK13548 229 LTPETLRRVY 238
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
10-189 |
1.04e-31 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 115.29 E-value: 1.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevVDRGIILIPEGRQLFP 89
Cdd:cd03263 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKA--ARQSLGYCPQFDALFD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 90 DMTVRENLQM-----GTYRRAARAAQEsRMEEVLELFPrVRERLdqtASSLSGGEQQMVAIARGMMANPRILMFDEPSLG 164
Cdd:cd03263 89 ELTVREHLRFyarlkGLPKSEIKEEVE-LLLRVLGLTD-KANKR---ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163
|
170 180
....*....|....*....|....*
gi 597799979 165 LAPIVVSQVFDVVRKIaATGTTVLI 189
Cdd:cd03263 164 LDPASRRAIWDLILEV-RKGRSIIL 187
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-214 |
1.07e-31 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 116.72 E-value: 1.07e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRAT-----ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvd 75
Cdd:COG1101 1 MLELKNLSKTFNPGTvnekrALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYK--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 R-GIIlipeGRqLF--------PDMTVRENLQMGTYR-------RAARAAQESRMEEVLELFPRVRE-RLDQTASSLSGG 138
Cdd:COG1101 78 RaKYI----GR-VFqdpmmgtaPSMTIEENLALAYRRgkrrglrRGLTKKRRELFRELLATLGLGLEnRLDTKVGLLSGG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 139 EQQmvAIARGM--MANPRILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVVL 214
Cdd:COG1101 153 QRQ--ALSLLMatLTKPKLLLLDEHTAALDPKTAALVLELTEKIvEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIIL 229
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-213 |
3.59e-31 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 117.10 E-value: 3.59e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHV----DAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD- 75
Cdd:COG1135 1 MIELENLsktfPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 -RGIILIPEGRQLFPDMTVREN----LQMGTYRRAARAAqesRMEEVLELfprV--RERLDQTASSLSGGEQQMVAIARG 148
Cdd:COG1135 81 rRKIGMIFQHFNLLSSRTVAENvalpLEIAGVPKAEIRK---RVAELLEL---VglSDKADAYPSQLSGGQKQRVGIARA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 149 MMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIV--EQNVFTtlKVANRGYVLENGRVV 213
Cdd:COG1135 155 LANNPKVLLCDEATSALDPETTRSILDLLKDINReLGLTIVLIthEMDVVR--RICDRVAVLENGRIV 220
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-161 |
4.39e-31 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 117.36 E-value: 4.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevvDRGIILI 81
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE---NRHVNTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMGTyrraaraaqesRMEEV--LELFPRVRE-----RLDQTA----SSLSGGEQQMVAIARGMM 150
Cdd:PRK09452 92 FQSYALFPHMTVFENVAFGL-----------RMQKTpaAEITPRVMEalrmvQLEEFAqrkpHQLSGGQQQRVAIARAVV 160
|
170
....*....|.
gi 597799979 151 ANPRILMFDEP 161
Cdd:PRK09452 161 NKPKVLLLDES 171
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-213 |
8.10e-31 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 118.59 E-value: 8.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDA-GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:COG3845 258 LEVENLSVrDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGVAY 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQ---LFPDMTVRENLQMGTYRRAA--------RAAQESRMEEVLELFpRVRER-LDQTASSLSGGEQQMVAIARG 148
Cdd:COG3845 338 IPEDRLgrgLVPDMSVAENLILGRYRRPPfsrggfldRKAIRAFAEELIEEF-DVRTPgPDTPARSLSGGNQQKVILARE 416
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 149 MMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:COG3845 417 LSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIV 481
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-225 |
1.38e-30 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 117.84 E-value: 1.38e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLP---AHEVvdrG 77
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTpakAHQL---G 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQLFPDMTVRENLqmgTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILM 157
Cdd:PRK15439 88 IYLVPQEPLLFPNLSVKENI---LFGLPKRQASMQKMKQLLAAL-GCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 158 FDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-231 |
2.19e-30 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 116.09 E-value: 2.19e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvVDRGIIL 80
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARA-ASRRVAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMG---------TYRRAARAAQESRMEEVlelfpRVRERLDQTASSLSGGEQQMVAIARGMMA 151
Cdd:PRK09536 82 VPQDTSLSFEFDVRQVVEMGrtphrsrfdTWTETDRAAVERAMERT-----GVAQFADRPVTSLSGGERQRVLLARALAQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 152 NPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAY 231
Cdd:PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAF 236
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
17-229 |
1.11e-29 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 111.58 E-value: 1.11e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD---RGIILIPEGRQLFPDMTV 93
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRElrrKKISMVFQSFALLPHRTV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 94 RENLQMG-TYRRAARAAQESRMEEVLELFPrVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQ 172
Cdd:cd03294 120 LENVAFGlEVQGVPRAEREERAAEALELVG-LEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRRE 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 173 VFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN---DHVRR 229
Cdd:cd03294 199 MQDELLRLQAElQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNpanDYVRE 259
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-223 |
1.52e-29 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 112.62 E-value: 1.52e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIthlPAHEVVDR-GIILIP 82
Cdd:PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV---PARARLARaRIGVVP 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 EGRQLFPDMTVRENLQM-GTYRRAARAAQESRMEEVLElFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK13536 121 QFDNLDLEFTVRENLLVfGRYFGMSTREIEAVIPSLLE-FARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLN 223
Cdd:PRK13536 200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-161 |
1.57e-29 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 109.49 E-value: 1.57e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA---GKITFLGEDITHLPAHEvvdRG 77
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFsasGEVLLNGRRLTALPAEQ---RR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQLFPDMTVRENLQMGTYRRAARAAQESRMEEVLE------LFPRvrerldqTASSLSGGEQQMVAIARGMMA 151
Cdd:COG4136 78 IGILFQDDLLFPHLSVGENLAFALPPTIGRAQRRARVEQALEeaglagFADR-------DPATLSGGQRARVALLRALLA 150
|
170
....*....|
gi 597799979 152 NPRILMFDEP 161
Cdd:COG4136 151 EPRALLLDEP 160
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-210 |
2.53e-29 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 108.82 E-value: 2.53e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGeIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIThlpAHEVVDRGII-L 80
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL---KQPQKLRRRIgY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQ-MGTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:cd03264 77 LPQEFGVYPNFTVREFLDyIAWLKGIPSKEVKARVDEVLELV-NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVL---IVE--QNVFTTLKVANRGYVLENG 210
Cdd:cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILsthIVEdvESLCNQVAVLNKGKLVFEG 211
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
12-224 |
5.99e-29 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 110.53 E-value: 5.99e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 12 GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA---GKITFLGEDITHLPAHE---VVDRGIILIPegr 85
Cdd:COG0444 16 GVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGitsGEILFDGEDLLKLSEKElrkIRGREIQMIF--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 86 Q-----LFPDMTVREnlQMG----TYRRAARAAQESRMEEVLEL--FPRVRERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:COG0444 93 QdpmtsLNPVMTVGD--QIAeplrIHGGLSKAEARERAIELLERvgLPDPERRLDRYPHELSGGMRQRVMIARALALEPK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 155 ILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:COG0444 171 LLIADEPTTALDVTIQAQILNLLKDLQReLGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELFEN 241
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
6-190 |
1.17e-28 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 107.90 E-value: 1.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 6 HVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLpahevvDRgiilipEGR 85
Cdd:COG4181 17 TVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFAL------DE------DAR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 86 ---------------QLFPDMTVRENLQMGTYRRAARAAQEsRMEEVLElfpRV--RERLDQTASSLSGGEQQMVAIARG 148
Cdd:COG4181 85 arlrarhvgfvfqsfQLLPTLTALENVMLPLELAGRRDARA-RARALLE---RVglGHRLDHYPAQLSGGEQQRVALARA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 597799979 149 MMANPRILMFDEPSLGL----APIVVSQVFDVVRkiaATGTTVLIV 190
Cdd:COG4181 161 FATEPAILFADEPTGNLdaatGEQIIDLLFELNR---ERGTTLVLV 203
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
19-222 |
1.43e-28 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 110.19 E-value: 1.43e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGED------ITHLPAHEvvdRGIILIP-EGRqLFPDM 91
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVlqdsarGIFLPPHR---RRIGYVFqEAR-LFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 92 TVRENLQMGtYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP--SLGLA--- 166
Cdd:COG4148 93 SVRGNLLYG-RKRAPRAERRISFDEVVELL-GIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPlaALDLArka 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 167 ---------------PIV-VSQVFDVVRKIAatgTTVLiveqnvfttlkvanrgyVLENGRVVLADSSEALL 222
Cdd:COG4148 171 eilpylerlrdeldiPILyVSHSLDEVARLA---DHVV-----------------LLEQGRVVASGPLAEVL 222
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
19-212 |
1.48e-28 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 112.07 E-value: 1.48e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPDMTVRE 95
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQssgLYLDAPLAW 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTYRRAARAAQESRMEEVLELFPRVR----ERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVS 171
Cdd:PRK15439 361 NVCALTHNRRGFWIKPARENAVLERYRRALnikfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 597799979 172 QVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:PRK15439 441 DIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-223 |
1.77e-28 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 107.32 E-value: 1.77e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYG-RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVvDRGIIL 80
Cdd:cd03253 1 IEFENVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL-RRAIGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDmTVRENLQMGT-------YRRAARAAQesrMEEVLELFP-----RVRERldqtASSLSGGEQQMVAIARG 148
Cdd:cd03253 80 VPQDTVLFND-TIGYNIRYGRpdatdeeVIEAAKAAQ---IHDKIMRFPdgydtIVGER----GLKLSGGEKQRVAIARA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 149 MMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENGRVVLADSSEALLN 223
Cdd:cd03253 152 ILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHR--LSTIVNADKIIVLKDGRIVERGTHEELLA 224
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
17-216 |
3.55e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 106.13 E-value: 3.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPaHEVVDRGIILIPEGRQLFPDmTVREN 96
Cdd:cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLD-PADLRRNIGYVPQDVTLFYG-TLRDN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQMG----TYRRAARAAQESRMEEVLELFPR-----VRERldqtASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAP 167
Cdd:cd03245 98 ITLGaplaDDERILRAAELAGVTDFVNKHPNgldlqIGER----GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDM 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 597799979 168 IVVSQVFDVVRKIAATGTTVLIVEQNVFttLKVANRGYVLENGRVVlAD 216
Cdd:cd03245 174 NSEERLKERLRQLLGDKTLIIITHRPSL--LDLVDRIIVMDSGRIV-AD 219
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
17-212 |
4.04e-28 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 105.95 E-value: 4.04e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEV--VDRGIILIPEGRQLFPDMTVR 94
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIpyLRRKIGVVFQDFRLLPDRNVY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 EN--LQMGTYRRAARAAQEsRMEEVLELFPrVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQ 172
Cdd:cd03292 97 ENvaFALEVTGVPPREIRK-RVPAALELVG-LSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 597799979 173 VFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:cd03292 175 IMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-161 |
5.02e-28 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 108.65 E-value: 5.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHlpaHEVVDRGIILI 81
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH---RSIQQRDICMV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMGtYRRAARAAQE--SRMEEVLEL--FPRVRER-LDQtassLSGGEQQMVAIARGMMANPRIL 156
Cdd:PRK11432 84 FQSYALFPHMSLGENVGYG-LKMLGVPKEErkQRVKEALELvdLAGFEDRyVDQ----ISGGQQQRVALARALILKPKVL 158
|
....*
gi 597799979 157 MFDEP 161
Cdd:PRK11432 159 LFDEP 163
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
19-213 |
9.83e-28 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 104.88 E-value: 9.83e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPaheVVDRGIILIPEGRQLFPDMTVRENLQ 98
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP---PADRPVSMLFQENNLFAHLTVEQNVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 99 MG-TYRRAARAAQESRMEEVLELFPrVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVV 177
Cdd:cd03298 93 LGlSPGLKLTAEDRQAIEVALARVG-LAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
|
170 180 190
....*....|....*....|....*....|....*..
gi 597799979 178 RKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03298 172 LDLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-213 |
1.09e-27 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 109.73 E-value: 1.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIALGIGM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMGTYRRAA----RAAQESRMEEVLELFP-RVreRLDQTASSLSGGEQQMVAIARGMMANPRI 155
Cdd:COG3845 85 VHQHFMLVPNLTVAENIVLGLEPTKGgrldRKAARARIRELSERYGlDV--DPDAKVEDLSVGEQQRVEILKALYRGARI 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 156 LMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVeqnvftT------LKVANRGYVLENGRVV 213
Cdd:COG3845 163 LILDEPTAVLTPQEADELFEILRRLAAEGKSIIFI------ThklrevMAIADRVTVLRRGKVV 220
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-161 |
1.56e-27 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 109.38 E-value: 1.56e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITfLGE--DITHLPAHEvvdrgi 78
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVK-LGEtvKIGYFDQHQ------ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ilipegRQLFPDMTVRENLqmgtyRRAARAAQESRMEEVLE--LFPrvRERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:COG0488 388 ------EELDPDKTVLDEL-----RDGAPGGTEQEVRGYLGrfLFS--GDDAFKPVGVLSGGEKARLALAKLLLSPPNVL 454
|
....*
gi 597799979 157 MFDEP 161
Cdd:COG0488 455 LLDEP 459
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-161 |
3.83e-27 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 104.56 E-value: 3.83e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYG----RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHlPAhevVDR 76
Cdd:COG4525 3 MLTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG-PG---ADR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 GIILIPEGrqLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFprvreRLDQTAS----SLSGGEQQMVAIARGMMA 151
Cdd:COG4525 79 GVVFQKDA--LLPWLNVLDNVAFGlRLRGVPKAERRARAEELLALV-----GLADFARrriwQLSGGMRQRVGIARALAA 151
|
170
....*....|
gi 597799979 152 NPRILMFDEP 161
Cdd:COG4525 152 DPRFLLMDEP 161
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
19-228 |
6.00e-27 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 106.46 E-value: 6.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvdRGIILIPEGRQLFPDMTVRENLQ 98
Cdd:PRK11607 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ---RPINMMFQSYALFPHMTVEQNIA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 99 MGTYR-RAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQV-FDV 176
Cdd:PRK11607 114 FGLKQdKLPKAEIASRVNEMLGLV-HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMqLEV 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 177 VRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVR 228
Cdd:PRK11607 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTR 244
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-161 |
1.11e-26 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 105.17 E-value: 1.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevvDRGIILI 81
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR---DRKVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMG-----TYRRAARAAQESRMEEVLEL--FPRVRERLdqtASSLSGGEQQMVAIARGMMANPR 154
Cdd:PRK10851 80 FQHYALFRHMTVFDNIAFGltvlpRRERPNAAAIKAKVTQLLEMvqLAHLADRY---PAQLSGGQKQRVALARALAVEPQ 156
|
....*..
gi 597799979 155 ILMFDEP 161
Cdd:PRK10851 157 ILLLDEP 163
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
4-193 |
1.20e-26 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 101.92 E-value: 1.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHL---PAHEVVDRGIIL 80
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLnskKASKFRREKLGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:TIGR03608 81 LFQNFALIENETVEENLDLGlKYKKLSKKEKREKKKEALEKV-GLNLKLKQKIYELSGGEQQRVALARAILKPPPLILAD 159
|
170 180 190
....*....|....*....|....*....|....
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQN 193
Cdd:TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD 193
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
19-222 |
1.89e-26 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 104.81 E-value: 1.89e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHlpahevVDRGIILIPEGRQ---------LFP 89
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFD------SRKGIFLPPEKRRigyvfqearLFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 90 DMTVRENLQMGtYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIV 169
Cdd:TIGR02142 89 HLSVRGNLRYG-MKRARPSERRISFERVIELL-GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPR 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 597799979 170 VSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:TIGR02142 167 KYEILPYLERLHAeFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
16-213 |
1.95e-26 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 102.23 E-value: 1.95e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTtlrtIVGQIQ----PRAGKITFLGEDITHLPAHEVvdRGII-LIPEGRQLFpD 90
Cdd:cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKST----VVSLLErfydPTSGEILLDGVDIRDLNLRWL--RSQIgLVSQEPVLF-D 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 91 MTVRENLQMGTYRR----AARAAQESRMEEVLELFP-RVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGL 165
Cdd:cd03249 91 GTIAENIRYGKPDAtdeeVEEAAKKANIHDFIMSLPdGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSAL 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 597799979 166 ---APIVVSQVFDVVRKiaatGTTVLIVEQNVfTTLKVANRGYVLENGRVV 213
Cdd:cd03249 171 daeSEKLVQEALDRAMK----GRTTIVIAHRL-STIRNADLIAVLQNGQVV 216
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-213 |
2.32e-26 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 101.06 E-value: 2.32e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA--GKITFLGEDITHLPAHEVVDRGII 79
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVteGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LipegrqlfpdmtvrenlqmgtyrraarAAQES-RMEEV-LELFPR-VRErldqtasSLSGGEQQMVAIARGMMANPRIL 156
Cdd:cd03217 81 L---------------------------AFQYPpEIPGVkNADFLRyVNE-------GFSGGEKKRNEILQLLLLEPDLA 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVE--QNVFTTLKvANRGYVLENGRVV 213
Cdd:cd03217 127 ILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIThyQRLLDYIK-PDRVHVLYDGRIV 184
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-213 |
2.41e-26 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 102.40 E-value: 2.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR---- 76
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRlall 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 -GIILIPEGrqlfpdMTVREnlqMGTYRRA------ARAAQESR------MEEVlelfpRVRERLDQTASSLSGGEQQMV 143
Cdd:PRK11231 82 pQHHLTPEG------ITVRE---LVAYGRSpwlslwGRLSAEDNarvnqaMEQT-----RINHLADRRLTDLSGGQRQRA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 144 AIARGMMANPRILMFDEPSLGLApiVVSQV--FDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLD--INHQVelMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-224 |
3.11e-26 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 102.14 E-value: 3.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFlgEDIThLPAHEVVDRGIIL 80
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV--GDIT-IDTARSLSQQKGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQ----------LFPDMTVRENLQMG--TYRRAARAAQESRMEEVL---------ELFPRvrerldqtasSLSGGE 139
Cdd:PRK11264 80 IRQLRQhvgfvfqnfnLFPHRTVLENIIEGpvIVKGEPKEEATARARELLakvglagkeTSYPR----------RLSGGQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 140 QQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSE 219
Cdd:PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229
|
....*
gi 597799979 220 ALLNN 224
Cdd:PRK11264 230 ALFAD 234
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-190 |
4.49e-26 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 105.52 E-value: 4.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIIL 80
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR-VSV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFpDMTVRENLQMG----TYRRAARAAQESRMEEVLELFPR-VRERLDQTASSLSGGEQQMVAIARGMMANPRI 155
Cdd:TIGR02868 414 CAQDAHLF-DTTVRENLRLArpdaTDEELWAALERVGLADWLRALPDgLDTVLGEGGARLSGGERQRLALARALLADAPI 492
|
170 180 190
....*....|....*....|....*....|....*
gi 597799979 156 LMFDEPSLGLAPIVVSQVFDVVRKiAATGTTVLIV 190
Cdd:TIGR02868 493 LLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLI 526
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
12-234 |
4.91e-26 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 101.77 E-value: 4.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 12 GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAH---EVVDRGIILIPEGrQLF 88
Cdd:PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSrlyTVRKRMSMLFQSG-ALF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 89 PDMTVRENLQMgTYRRAARAAQESRMEEVLELFPRV--RERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:PRK11831 97 TDMNVFDNVAY-PLREHTQLPAPLLHSTVMMKLEAVglRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 167 PIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVR-RAYL-GI 234
Cdd:PRK11831 176 PITMGVLVKLISELnSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRvRQFLdGI 246
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
17-233 |
5.11e-26 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 104.99 E-value: 5.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQLFPDMTVREN 96
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAEN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQMGTYRRAARAAQESRM-EEVLELFPRVRERLDQTA--SSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQV 173
Cdd:PRK11288 100 LYLGQLPHKGGIVNRRLLnYEAREQLEHLGVDIDPDTplKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 174 FDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYLG 233
Cdd:PRK11288 180 FRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVG 239
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-222 |
7.29e-26 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 100.64 E-value: 7.29e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYG--RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIThLPAHEVVDRGII 79
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA-LADPAWLRRQVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFpDMTVRENLQMG----TYRRAARAAqesRMEEVLELFPRVRERLDQT----ASSLSGGEQQMVAIARGMMA 151
Cdd:cd03252 80 VVLQENVLF-NRSIRDNIALAdpgmSMERVIEAA---KLAGAHDFISELPEGYDTIvgeqGAGLSGGQRQRIAIARALIH 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 152 NPRILMFDEPSLGLAPIVVSQVFDVVRKIAAtGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELL 224
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-190 |
2.31e-25 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 103.52 E-value: 2.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIIL 80
Cdd:TIGR02857 322 LEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ-IAW 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDmTVRENLQMGT-------YRRAARAAQESRMEEVLELfpRVRERLDQTASSLSGGEQQMVAIARGMMANP 153
Cdd:TIGR02857 401 VPQHPFLFAG-TIAENIRLARpdasdaeIREALERAGLDEFVAALPQ--GLDTPIGEGGAGLSGGQAQRLALARAFLRDA 477
|
170 180 190
....*....|....*....|....*....|....*..
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKIaATGTTVLIV 190
Cdd:TIGR02857 478 PLLLLDEPTAHLDAETEAEVLEALRAL-AQGRTVLLV 513
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
10-190 |
5.19e-25 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 97.30 E-value: 5.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITF-LGEDITHLPAHEVVDRgiilipegrqLF 88
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRaGGARVAYVPQRSEVPD----------SL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 89 PdMTVRENLQMGT---------YRRAARAAQESRMEEVlelfpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:NF040873 71 P-LTVRDLVAMGRwarrglwrrLTRDDRAAVDDALERV-----GLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLD 144
|
170 180 190
....*....|....*....|....*....|.
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLIV 190
Cdd:NF040873 145 EPTTGLDAESRERIIALLAEEHARGATVVVV 175
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-214 |
5.52e-25 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 96.61 E-value: 5.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYG--RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLpaHEVVDRGII 79
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKALSSLIS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFpDMTVRENLQmgtyRRaaraaqesrmeevlelfprvrerldqtassLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:cd03247 79 VLNQRPYLF-DTTLRNNLG----RR------------------------------FSGGERQRLALARILLQDAPIVLLD 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 160 EPSLGLAPI----VVSQVFDVVRkiaatGTTVLIVEQNVfTTLKVANRGYVLENGRVVL 214
Cdd:cd03247 124 EPTVGLDPIterqLLSLIFEVLK-----DKTLIWITHHL-TGIEHMDKILFLENGKIIM 176
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-222 |
1.97e-24 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 96.92 E-value: 1.97e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRAT--ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVvDRGII 79
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASL-RRQIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFPDmTVRENLQMGTY-------RRAARAAQEsrMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMAN 152
Cdd:cd03251 80 LVSQDVFLFND-TVAENIAYGRPgatreevEEAARAANA--HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 153 PRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHR--LSTIENADRIVVLEDGKIVERGTHEELL 224
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-214 |
3.09e-24 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 100.21 E-value: 3.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY--GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPaHEVVDRGII 79
Cdd:COG4618 331 LSVENLTVVPpgSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWD-REELGRHIG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFPDmTVREN---LQMGTYRRAARAAQESRMEEVLELFPRVRE-RLDQTASSLSGGEQQMVAIARGMMANPRI 155
Cdd:COG4618 410 YLPQDVELFDG-TIAENiarFGDADPEKVVAAAKLAGVHEMILRLPDGYDtRIGEGGARLSGGQRQRIGLARALYGDPRL 488
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 156 LMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVfTTLKVANRGYVLENGRVVL 214
Cdd:COG4618 489 VVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRP-SLLAAVDKLLVLRDGRVQA 546
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
10-213 |
3.72e-24 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 94.93 E-value: 3.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA--GKITFLGEdithlPAHEVVDRGII-LIPEGRQ 86
Cdd:cd03213 18 SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGR-----PLDKRSFRKIIgYVPQDDI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 87 LFPDMTVRENLQMgtyrraarAAQesrmeevlelfprvrerldqtASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:cd03213 93 LHPTLTVRETLMF--------AAK---------------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 597799979 167 PIVVSQVFDVVRKIAATGTTVLI-VEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03213 144 SSSALQVMSLLRRLADTGRTIICsIHQPSSEIFELFDKLLLLSQGRVI 191
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
16-213 |
6.34e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 95.37 E-value: 6.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPaHEVVDRGIILIPEGRQLFPDmTVRE 95
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS-RKSLRSMIGVVLQDTFLFSG-TIME 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMG----TYRRAARAAQESRMEEVLELFPR-----VRERldqtASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:cd03254 96 NIRLGrpnaTDEEVIEAAKEAGAHDFIMKLPNgydtvLGEN----GGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 597799979 167 PIVVSQVFDVVRKIaATGTTVLIVEQNVfTTLKVANRGYVLENGRVV 213
Cdd:cd03254 172 TETEKLIQEALEKL-MKGRTSIIIAHRL-STIKNADKILVLDDGKII 216
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
18-225 |
6.78e-24 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 99.09 E-value: 6.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 18 QDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPDMTVR 94
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRdngFFPNFSIA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMgtyrraARAAQESRMEEVLELFPRVRER----------------LDQTASSLSGGEQQMVAIARGMMANPRILMF 158
Cdd:PRK09700 360 QNMAI------SRSLKDGGYKGAMGLFHEVDEQrtaenqrellalkchsVNQNITELSGGNQQKVLISKWLCCCPEVIIF 433
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 159 DEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVvladsSEALLNND 225
Cdd:PRK09700 434 DEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL-----TQILTNRD 495
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-224 |
7.36e-24 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 95.87 E-value: 7.36e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTI--VGQIQPRA---GKITFLGEDIthlpahevVDR 76
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrMNDLIPGArveGEILLDGEDI--------YDP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 GIILIPEGRQL---------FPdMTVRENLQMG--TYRRAARAAQESRMEEVLE---LFPRVRERLDQTASSLSGGEQQM 142
Cdd:COG1117 84 DVDVVELRRRVgmvfqkpnpFP-KSIYDNVAYGlrLHGIKSKSELDEIVEESLRkaaLWDEVKDRLKKSALGLSGGQQQR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 143 VAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATgTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:COG1117 163 LCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIF 241
|
..
gi 597799979 223 NN 224
Cdd:COG1117 242 TN 243
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
11-224 |
7.48e-24 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 95.81 E-value: 7.48e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 11 YGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHE----VVDRGIILIPEGR- 85
Cdd:PRK10619 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDgqlkVADKNQLRLLRTRl 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 86 -------QLFPDMTVRENLQMGTYRRAARAAQESRMEEVLELFP-RVRERL-DQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:PRK10619 95 tmvfqhfNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKvGIDERAqGKYPVHLSGGQQQRVSIARALAMEPEVL 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK10619 175 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
5-232 |
1.28e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 95.67 E-value: 1.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 5 EHVDAGYGRATILQ-----DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR--- 76
Cdd:PRK13641 6 ENVDYIYSPGTPMEkkgldNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKlrk 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 --GIIL-IPEGrQLFPDmTVRENLQMGTyRRAARAAQESRmEEVLELFPRV---RERLDQTASSLSGGEQQMVAIArGMM 150
Cdd:PRK13641 86 kvSLVFqFPEA-QLFEN-TVLKDVEFGP-KNFGFSEDEAK-EKALKWLKKVglsEDLISKSPFELSGGQMRRVAIA-GVM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 151 AN-PRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN-DHVR 228
Cdd:PRK13641 161 AYePEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDkEWLK 240
|
....
gi 597799979 229 RAYL 232
Cdd:PRK13641 241 KHYL 244
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
2-223 |
2.02e-23 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 98.10 E-value: 2.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGR--ATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-GI 78
Cdd:TIGR03797 452 IEVDRVTFRYRPdgPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQlGV 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILipEGRQLFPDmTVRENLQMG---TYRRAARAAQESRMEEVLELFPR-VRERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:TIGR03797 532 VL--QNGRLMSG-SIFENIAGGaplTLDEAWEAARMAGLAEDIRAMPMgMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 155 ILMFDEPSLGLAPI---VVSQVFDVVRkiaatGTTVLIVEQnvFTTLKVANRGYVLENGRVVLADSSEALLN 223
Cdd:TIGR03797 609 ILLFDEATSALDNRtqaIVSESLERLK-----VTRIVIAHR--LSTIRNADRIYVLDAGRVVQQGTYDELMA 673
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
17-210 |
2.07e-23 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 94.07 E-value: 2.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHlPAHevvDRGIILipEGRQLFPDMTVREN 96
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE-PGP---DRMVVF--QNYSLLPWLTVREN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQMGT---YRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQV 173
Cdd:TIGR01184 75 IALAVdrvLPDLSKSERRAIVEEHIALV-GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153
|
170 180 190
....*....|....*....|....*....|....*...
gi 597799979 174 FDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENG 210
Cdd:TIGR01184 154 QEELMQIWEeHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
2-234 |
3.62e-23 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 96.26 E-value: 3.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLP---AHEVVDRGI 78
Cdd:PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISdaeLREVRRKKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPEGRQLFPDMTVRENLQMGTyrRAARAAQESRMEEVLELFPRV--RERLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:PRK10070 109 AMVFQSFALMPHMTVLDNTAFGM--ELAGINAEERREKALDALRQVglENYAHSYPDELSGGMRQRVGLARALAINPDIL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGT-TVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLN---NDHVRRAYL 232
Cdd:PRK10070 187 LMDEAFSALDPLIRTEMQDELVKLQAKHQrTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNnpaNDYVRTFFR 266
|
..
gi 597799979 233 GI 234
Cdd:PRK10070 267 GV 268
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
15-213 |
4.07e-23 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 93.59 E-value: 4.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVG--QIQPRAGKITFLGEDITHLPAHEVVDRGIIL----IPEgrqlF 88
Cdd:COG0396 14 EILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGhpKYEVTSGSILLDGEDILELSPDERARAGIFLafqyPVE----I 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 89 PDMTVRENLqmgtyRRAARAAQESRMEeVLELFPRVRERLDQT-----------ASSLSGGEQQMVAIARGMMANPRILM 157
Cdd:COG0396 90 PGVSVSNFL-----RTALNARRGEELS-AREFLKLLKEKMKELgldedfldryvNEGFSGGEKKRNEILQMLLLEPKLAI 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 158 FDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIV-EQNVFTTLKVANRGYVLENGRVV 213
Cdd:COG0396 164 LDETDSGLDIDALRIVAEGVNKLRSPDRGILIItHYQRILDYIKPDFVHVLVDGRIV 220
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-234 |
4.58e-23 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 93.11 E-value: 4.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDvsLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHL-PAHEVVDrgiI 79
Cdd:PRK10771 1 MLKLTDITWLYHHLPMRFD--LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTpPSRRPVS---M 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEgRQLFPDMTVRENLQMG--------TYRRAARAAQESRM--EEVLELFPrvrerldqtaSSLSGGEQQMVAIARGM 149
Cdd:PRK10771 76 LFQE-NNLFSHLTVAQNIGLGlnpglklnAAQREKLHAIARQMgiEDLLARLP----------GQLSGGQRQRVALARCL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 150 MANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVR 228
Cdd:PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQErQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASA 224
|
....*.
gi 597799979 229 RAYLGI 234
Cdd:PRK10771 225 SALLGI 230
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
17-161 |
4.99e-23 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 94.80 E-value: 4.99e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD--RGIILI---PEGrQLFPDM 91
Cdd:COG4608 34 VDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRPlrRRMQMVfqdPYA-SLNPRM 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 92 TVRENLQ--MGTYRRAARAAqesRMEEVLELFPRV---RERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:COG4608 113 TVGDIIAepLRIHGLASKAE---RRERVAELLELVglrPEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEP 184
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
19-212 |
5.74e-23 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 96.61 E-value: 5.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPDMTVRE 95
Cdd:PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKrdgLVLGMSVKE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTYRRAARAA-----QESRM--EEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPI 168
Cdd:PRK10762 350 NMSLTALRYFSRAGgslkhADEQQavSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 597799979 169 VVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:PRK10762 430 AKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
17-188 |
7.49e-23 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 92.50 E-value: 7.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGE----DITHLPAHEVVD--RGII--------LIP 82
Cdd:COG4778 27 LDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDggwvDLAQASPREILAlrRRTIgyvsqflrVIP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 egRQLFPDMTVRENLQMGTYRRAARAaqesRMEEVLELFpRVRERLDQTA-SSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:COG4778 107 --RVSALDVVAEPLLERGVDREEARA----RARELLARL-NLPERLWDLPpATFSGGEQQRVNIARGFIADPPLLLLDEP 179
|
170 180
....*....|....*....|....*..
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVL 188
Cdd:COG4778 180 TASLDAANRAVVVELIEEAKARGTAII 206
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-195 |
1.11e-22 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 92.84 E-value: 1.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAhevvDRGIIL 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGA----ERGVVF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGrqLFPDMTVREN----LQMGTYRRAARAAQESRMEEVLELFPRVRERLDQtassLSGGEQQMVAIARGMMANPRIL 156
Cdd:PRK11248 77 QNEG--LLPWRNVQDNvafgLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQ----LSGGQRQRVGIARALAANPQLL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLI----VEQNVF 195
Cdd:PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLwQETGKQVLLithdIEEAVF 194
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-226 |
1.18e-22 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 92.53 E-value: 1.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTI--VGQIQPR---AGKITFLGEDItHLPAHEVVD 75
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPEvtiTGSIVYNGHNI-YSPRTDTVD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 --RGIILIPEGRQLFPdMTVRENLQMGTyrRAARAAQESRMEEVLE-------LFPRVRERLDQTASSLSGGEQQMVAIA 146
Cdd:PRK14239 84 lrKEIGMVFQQPNPFP-MSIYENVVYGL--RLKGIKDKQVLDEAVEkslkgasIWDEVKDRLHDSALGLSGGQQQRVCIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 147 RGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATgTTVLIVEQNVFTTLKVANR-GYVLENGRVVLADSSEALLNND 225
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRtGFFLDGDLIEYNDTKQMFMNPK 239
|
.
gi 597799979 226 H 226
Cdd:PRK14239 240 H 240
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-234 |
1.51e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 92.74 E-value: 1.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRAT-ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR--G 77
Cdd:PRK13644 1 MIRLENVSYSYPDGTpALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKlvG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILI-PEGRqlFPDMTVRENLQMG----------TYRRAARAAQESRMEEVLELFPRvrerldqtasSLSGGEQQMVAIA 146
Cdd:PRK13644 81 IVFQnPETQ--FVGRTVEEDLAFGpenlclppieIRKRVDRALAEIGLEKYRHRSPK----------TLSGGQGQCVALA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 147 RGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALLNNDH 226
Cdd:PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL-EELHDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
....*...
gi 597799979 227 VRraYLGI 234
Cdd:PRK13644 228 LQ--TLGL 233
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
17-213 |
2.14e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 91.63 E-value: 2.14e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEdithLP---AHEVVDRGIILIPEGRQLFPDMTV 93
Cdd:cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL----VPwkrRKKFLRRIGVVFGQKTQLWWDLPV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 94 RENLQM--GTYRRAARAAQEsRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLApiVVS 171
Cdd:cd03267 113 IDSFYLlaAIYDLPPARFKK-RLDELSELL-DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD--VVA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 597799979 172 Q------VFDVVRKiaaTGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03267 189 QenirnfLKEYNRE---RGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
16-203 |
2.47e-22 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 91.42 E-value: 2.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAH---EVVDRGIILIPEGRQLFPDMT 92
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAakaELRNQKLGFIYQFHHLLPDFT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 93 VRENLQM----GTYRRAARAAQESRMEEVLELFPRVRERldqtASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPI 168
Cdd:PRK11629 104 ALENVAMplliGKKKPAEINSRALEMLAAVGLEHRANHR----PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDAR 179
|
170 180 190
....*....|....*....|....*....|....*.
gi 597799979 169 VVSQVFDVVRKI-AATGTTVLIVEQNvfttLKVANR 203
Cdd:PRK11629 180 NADSIFQLLGELnRLQGTAFLVVTHD----LQLAKR 211
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-213 |
3.44e-22 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 90.70 E-value: 3.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEV--VDRG 77
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVpfLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQLFPDMTVRENLQMGTYrrAARAAQESRMEEVLELFPRVrERLDQTAS---SLSGGEQQMVAIARGMMANPR 154
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLI--IAGASGDDIRRRVSAALDKV-GLLDKAKNfpiQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 155 ILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
17-232 |
3.94e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 92.07 E-value: 3.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDI---THLPAHEVVDRGIIL----------IPE 83
Cdd:PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEknkKKTKEKEKVLEKLVIqktrfkkikkIKE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 84 GR------------QLFpDMTVREN-----LQMGTYRRAAraaqESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIA 146
Cdd:PRK13651 103 IRrrvgvvfqfaeyQLF-EQTIEKDiifgpVSMGVSKEEA----KKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 147 rGMMA-NPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVL-ADSSEALLNN 224
Cdd:PRK13651 178 -GILAmEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKdGDTYDILSDN 256
|
....*...
gi 597799979 225 DHVRRAYL 232
Cdd:PRK13651 257 KFLIENNM 264
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
2-160 |
4.46e-22 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 94.12 E-value: 4.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVvdRGII- 79
Cdd:COG5265 358 VRFENVSFGYdPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASL--RAAIg 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFPDmTVRENLQMG-------TYRRAARAAQesrMEEVLELFP-----RVRER-LdqtasSLSGGEQQMVAIA 146
Cdd:COG5265 436 IVPQDTVLFND-TIAYNIAYGrpdaseeEVEAAARAAQ---IHDFIESLPdgydtRVGERgL-----KLSGGEKQRVAIA 506
|
170
....*....|....
gi 597799979 147 RGMMANPRILMFDE 160
Cdd:COG5265 507 RTLLKNPPILIFDE 520
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
3-212 |
4.52e-22 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 92.79 E-value: 4.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 3 TLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAhevVDRGIILIP 82
Cdd:PRK11000 5 TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGMVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 EGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK11000 82 QSYALYPHLSVAENMSFGlKLAGAKKEEINQRVNQVAEVL-QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 162 SLGL-APIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:PRK11000 161 LSNLdAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-224 |
4.73e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 91.31 E-value: 4.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIvGQIQPR------AGKITFLGEDITHLPAHEVVDRGIILIPE 83
Cdd:PRK14271 30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTL-NRMNDKvsgyrySGDVLLGGRSIFNYRDVLEFRRRVGMLFQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 84 GRQLFPdMTVRENLQMGTY------RRAARAAQESRMEEVlELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILM 157
Cdd:PRK14271 109 RPNPFP-MSIMDNVLAGVRahklvpRKEFRGVAQARLTEV-GLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLL 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 158 FDEPSLGLAPIVVSQVFDVVRKIAATgTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK14271 187 LDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
7-213 |
7.83e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 93.33 E-value: 7.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 7 VDAGYGRAtiLQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITF-LGEDITHLPAHEVVDRG-----IIL 80
Cdd:TIGR03269 292 VDRGVVKA--VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVrVGDEWVDMTKPGPDGRGrakryIGI 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLqmgTYRRAARAAQE-SRMEEVLELF------PRVRERLDQTASSLSGGEQQMVAIARGMMANP 153
Cdd:TIGR03269 370 LHQEYDLYPHRTVLDNL---TEAIGLELPDElARMKAVITLKmvgfdeEKAEEILDKYPDELSEGERHRVALAQVLIKEP 446
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:TIGR03269 447 RIVILDEPTGTMDPITKVDVTHSILKArEEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-225 |
1.18e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 90.05 E-value: 1.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRAT--ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-G 77
Cdd:PRK13632 7 MIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKiG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQlFPDMTVRENLQMGTYRRA----------ARAAQESRMEEVlelfprvrerLDQTASSLSGGEQQMVAIAR 147
Cdd:PRK13632 87 IIFQNPDNQ-FIGATVEDDIAFGLENKKvppkkmkdiiDDLAKKVGMEDY----------LDKEPQNLSGGQKQRVAIAS 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 148 GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLI-VEQNVFTTLKvANRGYVLENGRVVLADSSEALLNND 225
Cdd:PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLIsITHDMDEAIL-ADKVIVFSEGKLIAQGKPKEILNNK 233
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
17-232 |
1.45e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 90.14 E-value: 1.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITH-----LPAHEVVdrGIILIPEGRQLFPDm 91
Cdd:PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYdkkslLEVRKTV--GIVFQNPDDQLFAP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 92 TVRENLQMGTYRRAARaaqesrMEEVLElfpRVRERLDQTASS---------LSGGEQQMVAIARGMMANPRILMFDEPS 162
Cdd:PRK13639 95 TVEEDVAFGPLNLGLS------KEEVEK---RVKEALKAVGMEgfenkpphhLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 163 LGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADS-SEALLNNDHVRRAYL 232
Cdd:PRK13639 166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTpKEVFSDIETIRKANL 236
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
2-211 |
1.48e-21 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 88.30 E-value: 1.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGedithlpahevvdrGIILI 81
Cdd:cd03250 6 ASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------SIAYV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDmTVRENLQMGT------YRRAARAAQesrMEEVLELFPRvrerLDQT-----ASSLSGGEQQMVAIARGMM 150
Cdd:cd03250 72 SQEPWIQNG-TIRENILFGKpfdeerYEKVIKACA---LEPDLEILPD----GDLTeigekGINLSGGQKQRISLARAVY 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 151 ANPRILMFDEPSLGLAPIVVSQVFD-VVRKIAATGTTVLIVEQNVfTTLKVANRGYVLENGR 211
Cdd:cd03250 144 SDADIYLLDDPLSAVDAHVGRHIFEnCILGLLLNNKTRILVTHQL-QLLPHADQIVVLDNGR 204
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
5-217 |
1.62e-21 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 88.70 E-value: 1.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 5 EHVDAGY--GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIILIP 82
Cdd:cd03244 6 KNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR-ISIIP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 EGRQLFPDmTVRENLQ-MGTYRRAA--RAAQESRMEEVLELFP-RVRERLDQTASSLSGGEQQMVAIARGMMANPRILMF 158
Cdd:cd03244 85 QDPVLFSG-TIRSNLDpFGEYSDEElwQALERVGLKEFVESLPgGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 159 DEPSLGLAPIVVSQVFDVVRKiAATGTTVLIVEQNVFTTLKvANRGYVLENGRVVLADS 217
Cdd:cd03244 164 DEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
16-192 |
2.29e-21 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 88.48 E-value: 2.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA---GKITFLGEDIThlpAHEVVDRgIILIPEGRQLFPDMT 92
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPRK---PDQFQKC-VAYVRQDDILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 93 VRENLqmgTY------RRAARAAQESRMEEVLEL----FPRVRERLdqtASSLSGGEQQMVAIARGMMANPRILMFDEPS 162
Cdd:cd03234 98 VRETL---TYtailrlPRKSSDAIRKKRVEDVLLrdlaLTRIGGNL---VKGISGGERRRVSIAVQLLWDPKVLILDEPT 171
|
170 180 190
....*....|....*....|....*....|.
gi 597799979 163 LGLAPIVVSQVFDVVRKIAATGTTVLI-VEQ 192
Cdd:cd03234 172 SGLDSFTALNLVSTLSQLARRNRIVILtIHQ 202
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-189 |
3.66e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 88.43 E-value: 3.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQ----PR-AGKITFLGEDITHLPAHEVVDR 76
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeARvSGEVYLDGQDIFKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 --GIILIPEGrqlFPDMTVRENLQMG-TYRRAARAAQE--SRMEEVLE---LFPRVRERLDQTASSLSGGEQQMVAIARG 148
Cdd:PRK14247 84 vqMVFQIPNP---IPNLSIFENVALGlKLNRLVKSKKElqERVRWALEkaqLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 597799979 149 MMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLI 189
Cdd:PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLV 201
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-161 |
3.86e-21 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 91.28 E-value: 3.86e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFL-GEDITHLPahevvdrgiilip 82
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPkGLRIGYLP------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 egrQ---LFPDMTVRENLQMG---------TYRRAARAAQES-----RMEEVLELF---------PRVR----------E 126
Cdd:COG0488 68 ---QeppLDDDLTVLDTVLDGdaelraleaELEELEAKLAEPdedleRLAELQEEFealggweaeARAEeilsglgfpeE 144
|
170 180 190
....*....|....*....|....*....|....*
gi 597799979 127 RLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:COG0488 145 DLDRPVSELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
9-213 |
3.95e-21 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 87.97 E-value: 3.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 9 AGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITflgedithlpahevVDRGIILIPE-GRQL 87
Cdd:cd03220 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT--------------VRGRVSSLLGlGGGF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 88 FPDMTVRENLQM-GTYRRAARAAQESRMEEVLElFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEpslGLA 166
Cdd:cd03220 96 NPELTGRENIYLnGRLLGLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE---VLA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 167 piVVSQVF-----DVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:cd03220 172 --VGDAAFqekcqRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-212 |
4.30e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 86.50 E-value: 4.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYG--RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgII 79
Cdd:cd03246 1 LEVENVSFRYPgaEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH-VG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFPDmTVRENLqmgtyrraaraaqesrmeevlelfprvrerldqtassLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:cd03246 80 YLPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVfTTLKVANRGYVLENGRV 212
Cdd:cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
10-223 |
5.08e-21 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 87.83 E-value: 5.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEdITHLpahevVDRGIILIPEgrqlfp 89
Cdd:COG1134 35 RREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGR-VSAL-----LELGAGFHPE------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 90 dMTVRENLQM-GTYRRAARAAQESRMEEVLElFPRVRERLDQTASSLSGGeqqMV-----AIArgMMANPRILMFDEpsl 163
Cdd:COG1134 103 -LTGRENIYLnGRLLGLSRKEIDEKFDEIVE-FAELGDFIDQPVKTYSSG---MRarlafAVA--TAVDPDILLVDE--- 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 164 GLApiVVSQVF-----DVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLN 223
Cdd:COG1134 173 VLA--VGDAAFqkkclARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIA 235
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-225 |
5.97e-21 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 90.65 E-value: 5.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRAT--ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPaHEVVDRGII 79
Cdd:PRK11160 339 LTLNNVSFTYPDQPqpVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS-EAALRQAIS 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFPDmTVRENLQMgtyrrAARAAQESRMEEVLElfpRV--------RERLDQ----TASSLSGGEQQMVAIAR 147
Cdd:PRK11160 418 VVSQRVHLFSA-TLRDNLLL-----AAPNASDEALIEVLQ---QVgleklledDKGLNAwlgeGGRQLSGGEQRRLGIAR 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 148 GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAtGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:PRK11160 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRL-TGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-228 |
6.09e-21 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 90.61 E-value: 6.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVRENLQMGtyRRAAR----------AAQESRMEEVLeLFPRVRERLDQTASSLSGGEQQMVAIARGMM 150
Cdd:PRK09700 85 IYQELSVIDELTVLENLYIG--RHLTKkvcgvniidwREMRVRAAMML-LRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 151 ANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVR 228
Cdd:PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-160 |
7.98e-21 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 87.08 E-value: 7.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPahevvdrgiil 80
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK----------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 iPEG-RQ----------LFPDmTVRENLQMgTYRRAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGM 149
Cdd:PRK10247 76 -PEIyRQqvsycaqtptLFGD-TVYDNLIF-PWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL 152
|
170
....*....|.
gi 597799979 150 MANPRILMFDE 160
Cdd:PRK10247 153 QFMPKVLLLDE 163
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
10-189 |
1.19e-20 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 86.16 E-value: 1.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA---GKITFLGEDIthLPAHEVVDRGIILIPEGRQ 86
Cdd:cd03233 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYNGIPY--KEFAEKYPGEIIYVSEEDV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 87 LFPDMTVREnlqmgTYRRAARAaqesrmeevlelfprvreRLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:cd03233 94 HFPTLTVRE-----TLDFALRC------------------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
170 180
....*....|....*....|....
gi 597799979 167 PIVVSQVFDVVRKIA-ATGTTVLI 189
Cdd:cd03233 151 SSTALEILKCIRTMAdVLKTTTFV 174
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
5-213 |
1.42e-20 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 89.64 E-value: 1.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 5 EHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLpAHEVVDRGIILIPE 83
Cdd:PRK13657 338 DDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV-TRASLRRNIAVVFQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 84 GRQLFpDMTVRENLQMG-------TYRRAARAAQesrmeeVLELFPRVRERLDQTA----SSLSGGEQQMVAIARGMMAN 152
Cdd:PRK13657 417 DAGLF-NRSIEDNIRVGrpdatdeEMRAAAERAQ------AHDFIERKPDGYDTVVgergRQLSGGERQRLAIARALLKD 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 153 PRILMFDEPSLGL---APIVVSQVFDVVRKiaatGTTVLIVEQNVfTTLKVANRGYVLENGRVV 213
Cdd:PRK13657 490 PPILILDEATSALdveTEAKVKAALDELMK----GRTTFIIAHRL-STVRNADRILVFDNGRVV 548
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-213 |
1.61e-20 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 88.32 E-value: 1.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHV----DAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD- 75
Cdd:PRK11153 1 MIELKNIskvfPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 -RGIILIPEGRQLFPDMTVRENLQMgtyrrAARAAQESRME---EVLELFPRV--RERLDQTASSLSGGEQQMVAIARGM 149
Cdd:PRK11153 81 rRQIGMIFQHFNLLSSRTVFDNVAL-----PLELAGTPKAEikaRVTELLELVglSDKADRYPAQLSGGQKQRVAIARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 150 MANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIV--EQNVFTtlKVANRGYVLENGRVV 213
Cdd:PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRElGLTIVLIthEMDVVK--RICDRVAVIDAGRLV 220
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-224 |
1.73e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 87.84 E-value: 1.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDithlPAHEVVD--RGIILIPEGR-QLFPDMTV 93
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYV----PFKRRKEfaRRIGVVFGQRsQLWWDLPA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 94 RENLQM--GTYRRAARAAQEsRMEEVLELFpRVRERLDQTASSLSGGeQQMVA-IARGMMANPRILMFDEPSLGLApiVV 170
Cdd:COG4586 114 IDSFRLlkAIYRIPDAEYKK-RLDELVELL-DLGELLDTPVRQLSLG-QRMRCeLAAALLHRPKILFLDEPTIGLD--VV 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 171 SQ--VFDVVRKIAAT-GTTVLI-------VEQnvfttlkVANRGYVLENGRVVLADSSEALLNN 224
Cdd:COG4586 189 SKeaIREFLKEYNRErGTTILLtshdmddIEA-------LCDRVIVIDHGRIIYDGSLEELKER 245
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
9-213 |
2.00e-20 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 87.05 E-value: 2.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 9 AGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHL--PAHEVVDRGIILIPEGR- 85
Cdd:PRK10419 20 GKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLnrAQRKAFRRDIQMVFQDSi 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 86 -QLFPDMTVRENLQ--MGTYRRAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPS 162
Cdd:PRK10419 100 sAVNPRKTVREIIRepLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 163 LGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:PRK10419 180 SNLDLVLQAGVIRLLKKLqQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-223 |
2.50e-20 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 89.03 E-value: 2.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYG-RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVvdRGII- 79
Cdd:TIGR01193 474 IVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL--RQFIn 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFpDMTVRENLQMGTYRRAA-----RAAQESRMEEVLELFPR-VRERLDQTASSLSGGEQQMVAIARGMMANP 153
Cdd:TIGR01193 552 YLPQEPYIF-SGSILENLLLGAKENVSqdeiwAACEIAEIKDDIENMPLgYQTELSEEGSSISGGQKQRIALARALLTDS 630
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKIaaTGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALLN 223
Cdd:TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRL-SVAKQSDKIIVLDHGKIIEQGSHDELLD 697
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
17-232 |
2.75e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 86.78 E-value: 2.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-GIILIPEGRQLFPDmTVRE 95
Cdd:PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFvGLVFQNPDDQIFSP-TVEQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTYRRAA-RAAQESRMEEVLELFPrVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVF 174
Cdd:PRK13652 99 DIAFGPINLGLdEETVAHRVSSALHMLG-LEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 175 DVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADS-SEALLNNDHVRRAYL 232
Cdd:PRK13652 178 DFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTvEEIFLQPDLLARVHL 237
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-213 |
3.00e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 86.61 E-value: 3.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRAT--ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-GI 78
Cdd:PRK13635 6 IRVEHISFRYPDAAtyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQvGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPEGRQlFPDMTVRENLQMGTYRRA-ARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILM 157
Cdd:PRK13635 86 VFQNPDNQ-FVGATVQDDVAFGLENIGvPREEMVERVDQALRQV-GMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 158 FDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKvANRGYVLENGRVV 213
Cdd:PRK13635 164 LDEATSMLDPRGRREVLETVRQLkEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEIL 219
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1-231 |
4.26e-20 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 86.03 E-value: 4.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQI----QPRA----GKITFLGEDITHLPAHE 72
Cdd:PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLtgggAPRGarvtGDVTLNGEPLAAIDAPR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 73 VVDRGIILIPEGRQLFPdMTVRENLQMGTYRRAARAAQESRMEEvlELFPRVRERLDQTA------SSLSGGEQQMVAIA 146
Cdd:PRK13547 81 LARLRAVLPQAAQPAFA-FSAREIVLLGRYPHARRAGALTHRDG--EIAWQALALAGATAlvgrdvTTLSGGELARVQFA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 147 R---------GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLAD 216
Cdd:PRK13547 158 RvlaqlwpphDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDwNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
|
250
....*....|....*
gi 597799979 217 SSEALLNNDHVRRAY 231
Cdd:PRK13547 238 APADVLTPAHIARCY 252
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-225 |
5.72e-20 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 87.96 E-value: 5.72e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGqIQPRA---GKITFLGEDITHLPAHEVVDRG 77
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGtwdGEIYWSGSPLKASNIRDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQLFPDMTVRENLQMGTY-----RRAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMAN 152
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEitlpgGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 153 PRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDD 232
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
17-224 |
8.44e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 85.48 E-value: 8.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIT--HLPAHEVVDR-GIIL-IPEgRQLFPDmT 92
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITdkKVKLSDIRKKvGLVFqYPE-YQLFEE-T 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 93 VRENLQMGTYRRAARAAQ-ESRMEEVLELFPRVRERL-DQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVV 170
Cdd:PRK13637 101 IEKDIAFGPINLGLSEEEiENRVKRAMNIVGLDYEDYkDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 171 SQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK13637 181 DEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-229 |
1.32e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 84.70 E-value: 1.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 11 YGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTI--VGQIQPRA---GKITFLGEDITHLPAH-EVVDRGIILIPEG 84
Cdd:PRK14258 17 YDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLnrMNELESEVrveGRVEFFNQNIYERRVNlNRLRRQVSMVHPK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 85 RQLFPdMTVRENLQMGTYRRAARAAQE--SRMEEVL---ELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:PRK14258 97 PNLFP-MSVYDNVAYGVKIVGWRPKLEidDIVESALkdaDLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIA-ATGTTVLIVEQNV--------FTTLKVANRGYVlenGRVVLADSSEALLNNDHVRR 229
Cdd:PRK14258 176 EPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNLhqvsrlsdFTAFFKGNENRI---GQLVEFGLTKKIFNSPHDSR 251
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
17-212 |
1.38e-19 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 86.71 E-value: 1.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPDMTV 93
Cdd:PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRstgIYAYLDI 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 94 REN---LQMGTYRRAARAAQESRMEE----VLELFpRVRERLDQTA-SSLSGGEQQMVAIARGMMANPRILMFDEPSLGL 165
Cdd:PRK10982 344 GFNsliSNIRNYKNKVGLLDNSRMKSdtqwVIDSM-RVKTPGHRTQiGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGI 422
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 597799979 166 APIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:PRK10982 423 DVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-214 |
1.68e-19 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 84.34 E-value: 1.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKItFLGEdithLPAHEVVDRGIILI 81
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGT----APLAEAREDTRLMF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRqLFPDMTVRENLQM---GTYRRAARAAqesrMEEV-LElfprvrERLDQTASSLSGGEQQMVAIARGMMANPRILM 157
Cdd:PRK11247 88 QDAR-LLPWKKVIDNVGLglkGQWRDAALQA----LAAVgLA------DRANEWPAALSGGQKQRVALARALIHRPGLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 158 FDEPsLG----LAPIVVSQVfdVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVL 214
Cdd:PRK11247 157 LDEP-LGaldaLTRIEMQDL--IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
16-212 |
2.65e-19 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 82.90 E-value: 2.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIThLPAHEVVDRGIILIPEGRQLFPDmTVRE 95
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS-QYEHKYLHSKVSLVGQEPVLFAR-SLQD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMG----TYRRAARAAQESRMEEVLELFPR-VRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVV 170
Cdd:cd03248 107 NIAYGlqscSFECVKEAAQKAHAHSFISELASgYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 597799979 171 SQVFDVVRKiAATGTTVLIVEQNVfTTLKVANRGYVLENGRV 212
Cdd:cd03248 187 QQVQQALYD-WPERRTVLVIAHRL-STVERADQILVLDGGRI 226
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
12-213 |
3.52e-19 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 85.87 E-value: 3.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 12 GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQP---RAGKITFLGEDITHLPAHEVVDrgiiLIPEGRQLF 88
Cdd:TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPIDAKEMRAISA----YVQQDDLFI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 89 PDMTVRENLQ-MGTYRRAARAAQESRMEEVLELFPRVRER--------LDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:TIGR00955 112 PTLTVREHLMfQAHLRMPRRVTKKEKRERVDEVLQALGLRkcantrigVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLI-VEQNVFTTLKVANRGYVLENGRVV 213
Cdd:TIGR00955 192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICtIHQPSSELFELFDKIILMAEGRVA 246
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
17-232 |
3.96e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 83.63 E-value: 3.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-GIILIPEGRQLFpDMTVRE 95
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKvGLVFQDPDDQVF-SSTVWD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTYRRAARAAQ-ESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVF 174
Cdd:PRK13647 100 DVAFGPVNMGLDKDEvERRVEEALKAV-RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 175 DVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYL 232
Cdd:PRK13647 179 EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGL 236
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
19-212 |
4.48e-19 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 85.37 E-value: 4.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPR-AGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPDMTVR 94
Cdd:PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRwEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKrdgIVPVMGVG 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMGTYRRAARAaqeSRMEEVLELfPRVRERLDQ----TAS------SLSGGEQQMVAIARGMMANPRILMFDEPSLG 164
Cdd:PRK13549 360 KNITLAALDRFTGG---SRIDDAAEL-KTILESIQRlkvkTASpelaiaRLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 597799979 165 LAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:PRK13549 436 IDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-189 |
4.73e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 81.84 E-value: 4.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDItHLPAHEVVDRGIil 80
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI-DDPDVAEACHYL-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 ipeGRQ--LFPDMTVRENLQmgtYRRAARAAQESRMEEVLELF--PRVrerLDQTASSLSGGEQQMVAIARGMMANPRIL 156
Cdd:PRK13539 79 ---GHRnaMKPALTVAENLE---FWAAFLGGEELDIAAALEAVglAPL---AHLPFGYLSAGQKRRVALARLLVSNRPIW 149
|
170 180 190
....*....|....*....|....*....|...
gi 597799979 157 MFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLI 189
Cdd:PRK13539 150 ILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-224 |
4.84e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 83.17 E-value: 4.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQ------PRAGKITFLGEDITHLPAHEVvDRGIILIPEGRQLFP 89
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQIDAIKL-RKEVGMVFQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 90 DMTVRENLQMGTYRRAARAAQESR--MEEVLE---LFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSlG 164
Cdd:PRK14246 104 HLSIYDNIAYPLKSHGIKEKREIKkiVEECLRkvgLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPT-S 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 165 LAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK14246 183 MIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-230 |
5.36e-19 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 83.14 E-value: 5.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQ----------------PRAGKitfLGED 64
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksagshiellgrtvQREGR---LARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 65 ITHLPAHEvvdrGIILipEGRQLFPDMTVRENLQMGT------YRRAARAAQESRMEEVLELFPRV--RERLDQTASSLS 136
Cdd:PRK09984 81 IRKSRANT----GYIF--QQFNLVNRLSVLENVLIGAlgstpfWRTCFSWFTREQKQRALQALTRVgmVHFAHQRVSTLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 137 GGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLA 215
Cdd:PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234
|
250
....*....|....*..
gi 597799979 216 DSSEALLNN--DHVRRA 230
Cdd:PRK09984 235 GSSQQFDNErfDHLYRS 251
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-161 |
6.83e-19 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 83.74 E-value: 6.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGY-GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHL-PAhevvDRGI 78
Cdd:PRK11650 3 GLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELePA----DRDI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPEGRQLFPDMTVRENLQMG-TYRRAARAAQESRMEEV---LELfprvRERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:PRK11650 79 AMVFQNYALYPHMSVRENMAYGlKIRGMPKAEIEERVAEAariLEL----EPLLDRKPRELSGGQRQRVAMGRAIVREPA 154
|
....*..
gi 597799979 155 ILMFDEP 161
Cdd:PRK11650 155 VFLFDEP 161
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-232 |
6.86e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 82.97 E-value: 6.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRAT-ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITH-----LPAHEVV 74
Cdd:PRK13636 5 ILKVEELNYNYSDGThALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYsrkglMKLRESV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 75 drGIILIPEGRQLFpDMTVRENLQMGtyrraaraAQESRMEEVlELFPRVRERLDQTASS---------LSGGEQQMVAI 145
Cdd:PRK13636 85 --GMVFQDPDNQLF-SASVYQDVSFG--------AVNLKLPED-EVRKRVDNALKRTGIEhlkdkpthcLSFGQKKRVAI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 146 ARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIA-ATGTTVLIVEQNVFTTLKVANRGYVLENGRVVL-ADSSEALLN 223
Cdd:PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQkELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILqGNPKEVFAE 232
|
....*....
gi 597799979 224 NDHVRRAYL 232
Cdd:PRK13636 233 KEMLRKVNL 241
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
19-212 |
8.80e-19 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 84.49 E-value: 8.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPR-AGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPDMTVR 94
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKrhgIVPILGVG 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMGTYRRAA---RAAQESRMEEVLELFPRVRERL---DQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPI 168
Cdd:TIGR02633 358 KNITLSVLKSFCfkmRIDAAAELQIIGSAIQRLKVKTaspFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 597799979 169 VVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:TIGR02633 438 AKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-225 |
9.25e-19 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 84.38 E-value: 9.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATI--LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVvDRGII 79
Cdd:TIGR02203 331 VEFRNVTFRYPGRDRpaLDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL-RRQVA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFPDmTVRENLQMGTYRRAARAAQES--RMEEVLELFPRVRERLD----QTASSLSGGEQQMVAIARGMMANP 153
Cdd:TIGR02203 410 LVSQDVVLFND-TIANNIAYGRTEQADRAEIERalAAAYAQDFVDKLPLGLDtpigENGVLLSGGQRQRLAIARALLKDA 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:TIGR02203 489 PILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR--LSTIEKADRIVVMDDGRIVERGTHNELLARN 558
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-165 |
1.58e-18 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 81.31 E-value: 1.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITflgedithlpaHEVVDRgIIL 80
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-----------RNGKLR-IGY 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVrenlqmgTYRRAARAAQESRMEEVLELFPRVR--ERLDQTASSLSGGEQQMVAIARGMMANPRILMF 158
Cdd:PRK09544 72 VPQKLYLDTTLPL-------TVNRFLRLRPGTKKEDILPALKRVQagHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144
|
....*..
gi 597799979 159 DEPSLGL 165
Cdd:PRK09544 145 DEPTQGV 151
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
17-192 |
1.59e-18 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 84.26 E-value: 1.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIqpragkitflgediTHLPAHEVVDRG-IILIPEGRQLFpDMTVRE 95
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL--------------SHAETSSVVIRGsVAYVPQVSWIF-NATVRE 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGT---YRRAARAAQESRMEEVLELFP-RVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVS 171
Cdd:PLN03232 698 NILFGSdfeSERYWRAIDVTALQHDLDLLPgRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAH 777
|
170 180
....*....|....*....|..
gi 597799979 172 QVFDVVRKIAATGTT-VLIVEQ 192
Cdd:PLN03232 778 QVFDSCMKDELKGKTrVLVTNQ 799
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
11-232 |
2.64e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 81.21 E-value: 2.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 11 YGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHlpahevVDRGIILI--------- 81
Cdd:PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY------SKRGLLALrqqvatvfq 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 -PEGRQLFPDMTVRENLQMgtyRRAARAAQE--SRMEEVLELFPRVRERlDQTASSLSGGEQQMVAIARGMMANPRILMF 158
Cdd:PRK13638 85 dPEQQIFYTDIDSDIAFSL---RNLGVPEAEitRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRVAIAGALVLQARYLLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 159 DEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLA-DSSEALLNNDHVRRAYL 232
Cdd:PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHgAPGEVFACTEAMEQAGL 235
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
17-234 |
3.07e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 81.32 E-value: 3.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-----GIIL-IPEGrQLFPD 90
Cdd:PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPvrkkvGVVFqFPES-QLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 91 mTVRENLQMGTYRRA-ARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIV 169
Cdd:PRK13643 101 -TVLKDVAFGPQNFGiPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 170 VSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADS-SEALLNNDHVRRAYLGI 234
Cdd:PRK13643 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTpSDVFQEVDFLKAHELGV 245
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1-160 |
3.59e-18 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 82.55 E-value: 3.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVD-AGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGqIQPRA-GKItflgeditHLPAHEvvdrGI 78
Cdd:COG4178 362 ALALEDLTlRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAG-LWPYGsGRI--------ARPAGA----RV 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPEgRQLFPDMTVRENLqmgTYRRAARAAQESRMEEVLELF--PRVRERLDQTAS---SLSGGEQQMVAIARGMMANP 153
Cdd:COG4178 429 LFLPQ-RPYLPLGTLREAL---LYPATAEAFSDAELREALEAVglGHLAERLDEEADwdqVLSLGEQQRLAFARLLLHKP 504
|
....*..
gi 597799979 154 RILMFDE 160
Cdd:COG4178 505 DWLFLDE 511
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-224 |
4.36e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 80.60 E-value: 4.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTI--VGQIQPRA---GKITFLGEDI--THLPAHEVV 74
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFnrLNDLIPGFrveGKVTFHGKNLyaPDVDPVEVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 75 DRgIILIPEGRQLFPDmTVRENLQMGtyrrAARAAQESRMEEVLE-------LFPRVRERLDQTASSLSGGEQQMVAIAR 147
Cdd:PRK14243 91 RR-IGMVFQKPNPFPK-SIYDNIAYG----ARINGYKGDMDELVErslrqaaLWDEVKDKLKQSGLSLSGGQQQRLCIAR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 148 GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATgTTVLIVEQNV-----------FTTLKVANRGYvlENGRVVLAD 216
Cdd:PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMqqaarvsdmtaFFNVELTEGGG--RYGYLVEFD 241
|
....*...
gi 597799979 217 SSEALLNN 224
Cdd:PRK14243 242 RTEKIFNS 249
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-189 |
5.52e-18 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 78.94 E-value: 5.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvvDRGIILI 81
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEP--HENILYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMgtYRRAARAAQESrMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:TIGR01189 79 GHLPGLKPELSALENLHF--WAAIHGGAQRT-IEDALAAV-GLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEP 154
|
170 180
....*....|....*....|....*...
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVLI 189
Cdd:TIGR01189 155 TTALDKAGVALLAGLLRAHLARGGIVLL 182
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
5-162 |
6.05e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 79.44 E-value: 6.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 5 EHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAH---EVVDRGIILI 81
Cdd:PRK10584 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEaraKLRAKHVGFV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMGTYRRAARAAQ-ESRMEEVLELFPrVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:PRK10584 94 FQSFMLIPTLNALENVELPALLRGESSRQsRNGAKALLEQLG-LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADE 172
|
..
gi 597799979 161 PS 162
Cdd:PRK10584 173 PT 174
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
18-161 |
7.76e-18 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 78.69 E-value: 7.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 18 QDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHevvdrgiilipEGRQLF--------- 88
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE-----------YHQDLLylghqpgik 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 89 PDMTVRENLQMgtyrrAARAAQESRMEEVLELFPRV--RERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK13538 87 TELTALENLRF-----YQRLHGPGDDEALWEALAQVglAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
11-189 |
8.98e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 79.50 E-value: 8.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 11 YGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTI-----VGQIQPRAGKITFLGEDITHLPAHEV-VDRGIILIPEG 84
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFnrlleLNEEARVEGEVRLFGRNIYSPDVDPIeVRREVGMVFQY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 85 RQLFPDMTVRENLQMGT-YRRAARAAQE--SRMEEVLE---LFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMF 158
Cdd:PRK14267 94 PNPFPHLTIYDNVAIGVkLNGLVKSKKEldERVEWALKkaaLWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173
|
170 180 190
....*....|....*....|....*....|.
gi 597799979 159 DEPSLGLAPIVVSQVFDVVRKIAATGTTVLI 189
Cdd:PRK14267 174 DEPTANIDPVGTAKIEELLFELKKEYTIVLV 204
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-224 |
1.04e-17 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 81.27 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 3 TLEHVDAgygratiLQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGqIQPRAGKITFLGEDITHLPAHEvvdrgiiLIP 82
Cdd:COG4172 295 TVGHVKA-------VDGVSLTLRRGETLGLVGESGSGKSTLGLALLR-LIPSEGEIRFDGQDLDGLSRRA-------LRP 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 EGRQL---F--------PDMTVRENLQ--MGTYRRAA-RAAQESRMEEVLE---LFPRVRERLdqtASSLSGGEQQMVAI 145
Cdd:COG4172 360 LRRRMqvvFqdpfgslsPRMTVGQIIAegLRVHGPGLsAAERRARVAEALEevgLDPAARHRY---PHEFSGGQRQRIAI 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 146 ARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLiveqnvFTT--LKV----ANRGYVLENGRVVLADSS 218
Cdd:COG4172 437 ARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREhGLAYL------FIShdLAVvralAHRVMVMKDGKVVEQGPT 510
|
....*.
gi 597799979 219 EALLNN 224
Cdd:COG4172 511 EQVFDA 516
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
16-222 |
1.22e-17 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 81.33 E-value: 1.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHL-PAHEVVDRGIILipEGRQLFpDMTVR 94
Cdd:TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAdPAWLRRQMGVVL--QENVLF-SRSIR 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMG----TYRRAARAAQESRMEEVLELFPR-VRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIV 169
Cdd:TIGR01846 549 DNIALCnpgaPFEHVIHAAKLAGAHDFISELPQgYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 597799979 170 VSQVFDVVRKIAAtGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:TIGR01846 629 EALIMRNMREICR-GRTVIIIAHRL-STVRACDRIIVLEKGQIAESGRHEELL 679
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
5-231 |
1.51e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 78.87 E-value: 1.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 5 EHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIILIPEG 84
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR-IGLLAQN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 85 RQLFPDMTVRENLQMGTY---------RRAARAAQESRMEEVlelfpRVRERLDQTASSLSGGEQQMVAIARGMMANPRI 155
Cdd:PRK10253 90 ATTPGDITVQELVARGRYphqplftrwRKEDEEAVTKAMQAT-----GITHLADQSVDTLSGGQRQRAWIAMVLAQETAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 156 LMFDEPSLGLApivVSQVFDVVRKIA----ATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAY 231
Cdd:PRK10253 165 MLLDEPTTWLD---ISHQIDLLELLSelnrEKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-186 |
2.29e-17 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 80.36 E-value: 2.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGqIQPRA---GKITFLGEDIThlpAHEVVD-- 75
Cdd:PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGtyeGEIIFEGEELQ---ASNIRDte 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 76 -RGIILIPEGRQLFPDMTVRENLQMGT-YRRAARAAQESRMEEVLELFPRVRERLD--QTASSLSGGEQQMVAIARGMMA 151
Cdd:PRK13549 81 rAGIAIIHQELALVKELSVLENIFLGNeITPGGIMDYDAMYLRAQKLLAQLKLDINpaTPVGNLGLGQQQLVEIAKALNK 160
|
170 180 190
....*....|....*....|....*....|....*
gi 597799979 152 NPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTT 186
Cdd:PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIA 195
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
11-213 |
3.20e-17 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 78.04 E-value: 3.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 11 YGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDrgiiliPEGRQL--- 87
Cdd:PRK11701 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSE------AERRRLlrt 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 88 ---FPDMTVRENLQMGT-----------------YRRaARAAQESRMEEVlELFPrvrERLDQTASSLSGGEQQMVAIAR 147
Cdd:PRK11701 90 ewgFVHQHPRDGLRMQVsaggnigerlmavgarhYGD-IRATAGDWLERV-EIDA---ARIDDLPTTFSGGMQQRLQIAR 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 148 GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
2-231 |
3.33e-17 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 77.67 E-value: 3.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGygraTILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGqIQPRAGKITFLGEDITHLPAHEVVDRGIILI 81
Cdd:PRK03695 1 MQLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHRAYLS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFpDMTVRENLQMGTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMM-----ANP--R 154
Cdd:PRK03695 76 QQQTPPF-AMPVFQYLTLHQPDKTRTEAVASALNEVAEAL-GLDDKLGRSVNQLSGGEWQRVRLAAVVLqvwpdINPagQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 155 ILMFDEPSlglAPIVVSQV---FDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAY 231
Cdd:PRK03695 154 LLLLDEPM---NSLDVAQQaalDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVF 230
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
9-193 |
3.67e-17 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 79.77 E-value: 3.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 9 AGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTtLRTIVGQI-QPRAGKITFLGEDITHLPAHEVVDR-----GIILip 82
Cdd:PRK10535 16 SGEEQVEVLKGISLDIYAGEMVAIVGASGSGKST-LMNILGCLdKPTSGTYRVAGQDVATLDADALAQLrrehfGFIF-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 83 EGRQLFPDMTVRENLQM-GTYRRAARAAQESRMEEVLELFPrVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK10535 93 QRYHLLSHLTAAQNVEVpAVYAGLERKQRLLRAQELLQRLG-LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP 171
|
170 180 190
....*....|....*....|....*....|..
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVLIVEQN 193
Cdd:PRK10535 172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
16-217 |
6.52e-17 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 76.30 E-value: 6.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvVDRGIILIPEGRQLFpdmtvre 95
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLED-LRSSLTIIPQDPTLF------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 nlqMGTYRRAARAAQESRMEEVLELFprvreRLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFD 175
Cdd:cd03369 95 ---SGTIRSNLDPFDEYSDEEIYGAL-----RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 597799979 176 VVRKiAATGTTVLIVEQNVFTTLKVAnRGYVLENGRVVLADS 217
Cdd:cd03369 167 TIRE-EFTNSTILTIAHRLRTIIDYD-KILVMDAGEVKEYDH 206
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
9-224 |
6.85e-17 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 78.96 E-value: 6.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 9 AGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA----GKITFLGEDITHLPAHEVvdRGIilipEG 84
Cdd:COG4172 18 QGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPAahpsGSILFDGQDLLGLSEREL--RRI----RG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 85 RQ-----------LFPDMTVREnlQMG----TYRRAARAAQESRMEEVLEL--FPRVRERLDQTASSLSGGEQQMVAIAR 147
Cdd:COG4172 92 NRiamifqepmtsLNPLHTIGK--QIAevlrLHRGLSGAAARARALELLERvgIPDPERRLDAYPHQLSGGQRQRVMIAM 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 148 GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVL-------IVEqnvfttlKVANRGYVLENGRVVLADSSE 219
Cdd:COG4172 170 ALANEPDLLIADEPTTALDVTVQAQILDLLKDLqRELGMALLlithdlgVVR-------RFADRVAVMRQGEIVEQGPTA 242
|
....*
gi 597799979 220 ALLNN 224
Cdd:COG4172 243 ELFAA 247
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
18-213 |
8.17e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 78.80 E-value: 8.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 18 QDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPDMTVR 94
Cdd:PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKaegIIPVHSVA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMGTYRRAARA------AQESRMEEvlelfpRVRERL-------DQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK11288 350 DNINISARRHHLRAgclinnRWEAENAD------RFIRSLniktpsrEQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:PRK11288 424 TRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
17-219 |
8.67e-17 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 77.99 E-value: 8.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKE----GEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITfLGEdithlpaHEVVD--RGIILIPEGR----- 85
Cdd:PRK11144 10 LGDLCLTVNLtlpaQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV-LNG-------RVLFDaeKGICLPPEKRrigyv 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 86 ----QLFPDMTVRENLQMGTyrRAARAAQESRMEEVLELFPRvrerLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK11144 82 fqdaRLFPHYKVRGNLRYGM--AKSMVAQFDKIVALLGIEPL----LDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 162 slgLAPIvvsqvfDVVRK---------IAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSE 219
Cdd:PRK11144 156 ---LASL------DLPRKrellpylerLAREiNIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLE 214
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
17-213 |
1.09e-16 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 78.23 E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQLFPDMTVREN 96
Cdd:PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQMGTYRRAARAAQESRM-EEVLELFPRVRERLD--QTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQV 173
Cdd:PRK10982 94 MWLGRYPTKGMFVDQDKMyRDTKAIFDELDIDIDprAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 597799979 174 FDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:PRK10982 174 FTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-189 |
1.10e-16 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 75.37 E-value: 1.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITH-LPAHEvvdRGII 79
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKdLCTYQ---KQLC 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFPDMTVRENlqmgTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:PRK13540 78 FVGHRSGINPYLTLREN----CLYDIHFSPGAVGITELCRLF-SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD 152
|
170 180 190
....*....|....*....|....*....|
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLI 189
Cdd:PRK13540 153 EPLVALDELSLLTIITKIQEHRAKGGAVLL 182
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-162 |
1.36e-16 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 73.64 E-value: 1.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITfLGEDIThlPAHevvdrgiili 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT-WGSTVK--IGY---------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 pegrqlfpdmtvrenlqmgtyrraaraaqesrmeevlelfprvrerLDQtassLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:cd03221 68 ----------------------------------------------FEQ----LSGGEKMRLALAKLLLENPNLLLLDEP 97
|
.
gi 597799979 162 S 162
Cdd:cd03221 98 T 98
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
11-212 |
2.41e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 77.75 E-value: 2.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 11 YGRATIlQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDI-THLpahEVVDRGIILIPEGRQLFP 89
Cdd:TIGR01257 941 SGRPAV-DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNL---DAVRQSLGMCPQHNILFH 1016
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 90 DMTVRENLqMGTYRRAARAAQESR--MEEVLElFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAP 167
Cdd:TIGR01257 1017 HLTVAEHI-LFYAQLKGRSWEEAQleMEAMLE-DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 597799979 168 IVVSQVFDVVRKIaATGTTVLIVEQNVFTTLKVANRGYVLENGRV 212
Cdd:TIGR01257 1095 YSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
16-213 |
2.79e-16 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 77.45 E-value: 2.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLpAHEVVDRGIILIPEGRQLFpDMTVRE 95
Cdd:TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY-DHHYLHRQVALVGQEPVLF-SGSVRE 573
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTYR----RAARAAQESRMEEVLELFPR-VRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLaPIVV 170
Cdd:TIGR00958 574 NIAYGLTDtpdeEIMAAAKAANAHDFIMEFPNgYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL-DAEC 652
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 597799979 171 SQVFDVVRKIAatGTTVLIVEQNVfTTLKVANRGYVLENGRVV 213
Cdd:TIGR00958 653 EQLLQESRSRA--SRTVLLIAHRL-STVERADQILVLKKGSVV 692
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
23-191 |
7.01e-16 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 75.98 E-value: 7.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 23 EVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFlGEDITHLPAHEVVDRgiilipegrqlfpDMTVRENLqmgty 102
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDE-DLKISYKPQYISPDY-------------DGTVEEFL----- 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 103 RRAARAAQESRM--EEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSlglAPIVVSQ---VFDVV 177
Cdd:COG1245 423 RSANTDDFGSSYykTEIIKPL-GLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS---AHLDVEQrlaVAKAI 498
|
170
....*....|....*
gi 597799979 178 RKIA-ATGTTVLIVE 191
Cdd:COG1245 499 RRFAeNRGKTAMVVD 513
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
2-226 |
7.84e-16 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 74.94 E-value: 7.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEhVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPR----AGKITFLGEDITHLPAHE---VV 74
Cdd:COG4170 9 LTIE-IDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtADRFRWNGIDLLKLSPRErrkII 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 75 DRGIILI------------PEGRQLfpdmtvRENLQMGTYRRA--ARAAQesRMEEVLELFPRV-----RERLDQTASSL 135
Cdd:COG4170 88 GREIAMIfqepsscldpsaKIGDQL------IEAIPSWTFKGKwwQRFKW--RKKRAIELLHRVgikdhKDIMNSYPHEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 136 SGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVL 214
Cdd:COG4170 160 TEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLqGTSILLISHDLESISQWADTITVLYCGQTVE 239
|
250
....*....|..
gi 597799979 215 ADSSEALLNNDH 226
Cdd:COG4170 240 SGPTEQILKSPH 251
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
16-221 |
8.20e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 74.38 E-value: 8.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-GIILIPEGRQlFPDMTVR 94
Cdd:PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKiGMVFQNPDNQ-FVGATVE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMGTYRRA-ARAAQESRMEEVLELFPrVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQV 173
Cdd:PRK13650 101 DDVAFGLENKGiPHEEMKERVNEALELVG-MQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 597799979 174 FDVVRKIAAT-GTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEAL 221
Cdd:PRK13650 180 IKTIKGIRDDyQMTVISITHDL-DEVALSDRVLVMKNGQVESTSTPREL 227
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
14-210 |
9.40e-16 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 74.51 E-value: 9.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 14 ATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEdithlpahevvdrgIILIPEGRQLFPDmTV 93
Cdd:cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR--------------ISFSSQFSWIMPG-TI 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 94 RENLQMGT------YRRAARAAQesrMEEVLELFP-RVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:cd03291 115 KENIIFGVsydeyrYKSVVKACQ---LEEDITKFPeKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 597799979 167 PIVVSQVFD-VVRKIAATGTTVLIVeqNVFTTLKVANRGYVLENG 210
Cdd:cd03291 192 VFTEKEIFEsCVCKLMANKTRILVT--SKMEHLKKADKILILHEG 234
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
2-215 |
1.11e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 74.01 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY-------GRAtiLQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVV 74
Cdd:PRK13649 3 INLQNVSYTYqagtpfeGRA--LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 75 DR-----GIIL-IPEGrQLFpDMTVRENLQMGTYRRA-ARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIAR 147
Cdd:PRK13649 81 KQirkkvGLVFqFPES-QLF-EETVLKDVAFGPQNFGvSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 148 GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLA 215
Cdd:PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
17-184 |
1.48e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 75.04 E-value: 1.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQLFPDMTVREN 96
Cdd:PRK10762 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAEN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQMG-TYRRAARAAQESRM-EEVLELFPR--VRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQ 172
Cdd:PRK10762 100 IFLGrEFVNRFGRIDWKKMyAEADKLLARlnLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179
|
170
....*....|..
gi 597799979 173 VFDVVRKIAATG 184
Cdd:PRK10762 180 LFRVIRELKSQG 191
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
17-225 |
1.90e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 73.66 E-value: 1.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-----GIIL-IPEGrQLFPD 90
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPvrkriGMVFqFPES-QLFED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 91 MTVRE------NLQMGTYRRAARAAQesrmeEVLEL-FPrvRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSL 163
Cdd:PRK13646 102 TVEREiifgpkNFKMNLDEVKNYAHR-----LLMDLgFS--RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 164 GLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:PRK13646 175 GLDPQSKRQVMRLLKSLQTdENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
17-208 |
2.49e-15 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 72.44 E-value: 2.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEG-----EIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPahevvdrgiilipegRQLFPD- 90
Cdd:cd03237 10 LGEFTLEVEGGsisesEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKP---------------QYIKADy 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 91 -MTVRENLQMGTYRRAARAAQESRMEEVLELfprvrERL-DQTASSLSGGEQQMVAIARGMMANPRILMFDEPSlglAPI 168
Cdd:cd03237 75 eGTVRDLLSSITKDFYTHPYFKTEIAKPLQI-----EQIlDREVPELSGGELQRVAIAACLSKDADIYLLDEPS---AYL 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 597799979 169 VVSQ---VFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLE 208
Cdd:cd03237 147 DVEQrlmASKVIRRFAEnNEKTAFVVEHDIIMIDYLADRLIVFE 190
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
15-227 |
3.63e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 72.96 E-value: 3.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAG-----------KITFLGEDITHLPaHEVVD----RGII 79
Cdd:PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGtiqvgdiyigdKKNNHELITNPYS-KKIKNfkelRRRV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LI----PEgRQLFPDmTVRENLQMG-------TYRRAARAAQESRMEEVLELFprvrerLDQTASSLSGGEQQMVAIArG 148
Cdd:PRK13631 119 SMvfqfPE-YQLFKD-TIEKDIMFGpvalgvkKSEAKKLAKFYLNKMGLDDSY------LERSPFGLSGGQKRRVAIA-G 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 149 MMA-NPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHV 227
Cdd:PRK13631 190 ILAiQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHI 269
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-223 |
1.27e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 72.43 E-value: 1.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRA----TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVgQIQPR------AGKITFLGEDITHlpA 70
Cdd:PRK15134 5 LLAIENLSVAFRQQqtvrTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL-RLLPSppvvypSGDIRFHGESLLH--A 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 71 HEVVDRGIilipEGRQL---FPDMTVREN--------------LQMGTYRRAARAaqesrmeEVLELFPRV-----RERL 128
Cdd:PRK15134 82 SEQTLRGV----RGNKIamiFQEPMVSLNplhtlekqlyevlsLHRGMRREAARG-------EILNCLDRVgirqaAKRL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 129 DQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVL 207
Cdd:PRK15134 151 TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVRKLADRVAVM 230
|
250
....*....|....*.
gi 597799979 208 ENGRVVLADSSEALLN 223
Cdd:PRK15134 231 QNGRCVEQNRAATLFS 246
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-230 |
1.63e-14 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 70.65 E-value: 1.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYgraTILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRaGKITFLGEDITHLPAHEVvDRGIILI 81
Cdd:cd03289 8 LTAKYTEGGN---AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKW-RKAFGVI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDmTVRENLQ-MGTYRRAA--RAAQESRMEEVLELFP-RVRERLDQTASSLSGGEQQMVAIARGMMANPRILM 157
Cdd:cd03289 83 PQKVFIFSG-TFRKNLDpYGKWSDEEiwKVAEEVGLKSVIEQFPgQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 158 FDEPSLGLAPIvVSQVFDVVRKIAATGTTVLIVEQNVFTTLKvANRGYVLENGRVVLADSSEALLN-NDHVRRA 230
Cdd:cd03289 162 LDEPSAHLDPI-TYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNeKSHFKQA 233
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
11-213 |
1.65e-14 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 71.69 E-value: 1.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 11 YGRATILQDVSLEVKEGEIVTIVGANGAG--KTTTLRTIVGqiqPRAGKITFlgEDITHLPAHEVVDRGIIL---IPEGR 85
Cdd:NF000106 23 FGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*G---PDAGRRPW--RF*TWCANRRALRRTIG*hrpVR*GR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 86 QlfPDMTVRENLQM-GTYRRAARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLG 164
Cdd:NF000106 98 R--ESFSGRENLYMiGR*LDLSRKDARARADELLERF-SLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTG 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 597799979 165 LAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:NF000106 175 LDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVI 223
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-210 |
2.51e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 70.17 E-value: 2.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGY--GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEV-VDRG 77
Cdd:PRK13648 7 IIVFKNVSFQYqsDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLrKHIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILI-PEGRqlFPDMTVRENLQMGTYRRAarAAQESRMEEVLELFPRVR--ERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:PRK13648 87 IVFQnPDNQ--FVGSIVKYDVAFGLENHA--VPYDEMHRRVSEALKQVDmlERADYEPNALSGGQKQRVAIAGVLALNPS 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 155 ILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLK-----VANRGYVLENG 210
Cdd:PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEhNITIISITHDLSEAMEadhviVMNKGTVYKEG 224
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-224 |
2.62e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 70.21 E-value: 2.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY--GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRA---GKITFLGEDITHLPAHEVVDR 76
Cdd:PRK13640 6 VEFKHVSFTYpdSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTAKTVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 -GIILIPEGRQlFPDMTVRENLQMGTYRRAA-RAAQESRMEEVLELFPRVrERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:PRK13640 86 vGIVFQNPDNQ-FVGATVGDDVAFGLENRAVpRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 155 ILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKkNNLTVISITHDI-DEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
17-224 |
2.66e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 71.69 E-value: 2.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKitflgedithlpahEVVDRG-IILIPEGRQLFpDMTVRE 95
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA--------------SVVIRGtVAYVPQVSWIF-NATVRD 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTYRRAAR---AAQESRMEEVLELFP-----RVRERldqtASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAP 167
Cdd:PLN03130 698 NILFGSPFDPERyerAIDVTALQHDLDLLPggdltEIGER----GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 168 IVVSQVFDVVRKIAATGTT-VLIVEQNVFttLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PLN03130 774 HVGRQVFDKCIKDELRGKTrVLVTNQLHF--LSQVDRIILVHEGMIKEEGTYEELSNN 829
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
23-194 |
2.69e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 71.38 E-value: 2.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 23 EVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFlGEDITHLPAHEVVDrgiilipegrqlfPDMTVRENLqmgty 102
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP-ELKISYKPQYIKPD-------------YDGTVEDLL----- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 103 RRAARAAQESRME-EVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSlglAPIVVSQ---VFDVVR 178
Cdd:PRK13409 422 RSITDDLGSSYYKsEIIKPL-QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS---AHLDVEQrlaVAKAIR 497
|
170
....*....|....*..
gi 597799979 179 KIAA-TGTTVLIVEQNV 194
Cdd:PRK13409 498 RIAEeREATALVVDHDI 514
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-223 |
2.82e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 71.37 E-value: 2.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVG--QIQPRAGKI----------------TFLGE 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGRIiyhvalcekcgyverpSKVGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 64 DITHLP---AHEVVD--------------RGIILIPEGRQLFPDMTVRENLqMGTYRRAARAAQESrMEEVLELFPRVR- 125
Cdd:TIGR03269 81 PCPVCGgtlEPEEVDfwnlsdklrrrirkRIAIMLQRTFALYGDDTVLDNV-LEALEEIGYEGKEA-VGRAVDLIEMVQl 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 126 -ERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRK-IAATGTTVLIVEQNVFTTLKVANR 203
Cdd:TIGR03269 159 sHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEaVKASGISMVLTSHWPEVIEDLSDK 238
|
250 260
....*....|....*....|
gi 597799979 204 GYVLENGRVVLADSSEALLN 223
Cdd:TIGR03269 239 AIWLENGEIKEEGTPDEVVA 258
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
25-191 |
2.99e-14 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 71.35 E-value: 2.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 25 KEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKIT-----------FLGEDI-THL---------PAHEV--VDrgiiLI 81
Cdd:COG1245 97 KKGKVTGILGPNGIGKSTALKILSGELKPNLGDYDeepswdevlkrFRGTELqDYFkklangeikVAHKPqyVD----LI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PegRQLfpDMTVRENLqmgtyrraARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:COG1245 173 P--KVF--KGTVRELL--------EKVDERGKLDELAEKL-GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190
....*....|....*....|....*....|...
gi 597799979 162 SLGLApivVSQ---VFDVVRKIAATGTTVLIVE 191
Cdd:COG1245 240 SSYLD---IYQrlnVARLIRELAEEGKYVLVVE 269
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
15-234 |
4.01e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 69.53 E-value: 4.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEdithlPAHEVVDRGII-LIPEGRQL---FPd 90
Cdd:PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ-----PTRQALQKNLVaYVPQSEEVdwsFP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 91 MTVRENLQMGTY-----RRAARAAQESRMEEVLELFPRVRERLDQTAsSLSGGEQQMVAIARGMMANPRILMFDEPSLGL 165
Cdd:PRK15056 95 VLVEDVVMMGRYghmgwLRRAKKRDRQIVTAALARVDMVEFRHRQIG-ELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 166 APIVVSQVFDVVRKIAATGTTVLIVEQNV-----FTTLKVANRGYVLENGrvvladSSEALLNNDHVRRAYLGI 234
Cdd:PRK15056 174 DVKTEARIISLLRELRDEGKTMLVSTHNLgsvteFCDYTVMVKGTVLASG------PTETTFTAENLELAFSGV 241
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
15-189 |
4.46e-14 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 68.29 E-value: 4.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEdithlPAHEVVD---RGIILIPEGRQLFPDM 91
Cdd:cd03231 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG-----PLDFQRDsiaRGLLYLGHAPGIKTTL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 92 TVRENLQMgtYRR-AARAAQESRMEEVlelfpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVV 170
Cdd:cd03231 89 SVLENLRF--WHAdHSDEQVEEALARV-----GLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
170
....*....|....*....
gi 597799979 171 SQVFDVVRKIAATGTTVLI 189
Cdd:cd03231 162 ARFAEAMAGHCARGGMVVL 180
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-224 |
5.08e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 69.65 E-value: 5.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRAT-----ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKiTFLGEdiTHLPAH----- 71
Cdd:PRK13645 7 IILDNVSYTYAKKTpfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ-TIVGD--YAIPANlkkik 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 72 EVVD--RGIILI---PEgRQLFPDmTVRENLQMGTYRRAARAAQE-SRMEEVLELFPRVRERLDQTASSLSGGEQQMVAI 145
Cdd:PRK13645 84 EVKRlrKEIGLVfqfPE-YQLFQE-TIEKDIAFGPVNLGENKQEAyKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 146 ARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
24-191 |
5.27e-14 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 68.93 E-value: 5.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 24 VKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKitFLGED-----ITHLPAHE-------VVDRGI--ILIPEGRQLFP 89
Cdd:cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK--FDDPPdwdeiLDEFRGSElqnyftkLLEGDVkvIVKPQYVDLIP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 90 ---DMTVRENLQmgtyRRAARAAQESRMEeVLELfprvRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:cd03236 101 kavKGKVGELLK----KKDERGKLDELVD-QLEL----RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
170 180
....*....|....*....|....*...
gi 597799979 167 pivVSQVFD---VVRKIAATGTTVLIVE 191
Cdd:cd03236 172 ---IKQRLNaarLIRELAEDDNYVLVVE 196
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-161 |
6.95e-14 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 70.31 E-value: 6.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFL-GEDITHLP---AHEvvdrg 77
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSeNANIGYYAqdhAYD----- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 iilipegrqlFP-DMTVREnlQMGTYRraaraaQESRMEEVLE------LFPrvRERLDQTASSLSGGEQQMVAIARGMM 150
Cdd:PRK15064 395 ----------FEnDLTLFD--WMSQWR------QEGDDEQAVRgtlgrlLFS--QDDIKKSVKVLSGGEKGRMLFGKLMM 454
|
170
....*....|.
gi 597799979 151 ANPRILMFDEP 161
Cdd:PRK15064 455 QKPNVLVMDEP 465
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
17-161 |
9.02e-14 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 69.82 E-value: 9.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGqIQPRA---GKITFLGE-----DIthlpaHEVVDRGIILIPEGRQLF 88
Cdd:NF040905 17 LDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYPHGsyeGEILFDGEvcrfkDI-----RDSEALGIVIIHQELALI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 89 PDMTVRENLQMG-------------TYRRAAraaqesrmeevlELFPRV--RERLDQTASSLSGGEQQMVAIARGMMANP 153
Cdd:NF040905 91 PYLSIAENIFLGnerakrgvidwneTNRRAR------------ELLAKVglDESPDTLVTDIGVGKQQLVEIAKALSKDV 158
|
....*...
gi 597799979 154 RILMFDEP 161
Cdd:NF040905 159 KLLILDEP 166
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
16-210 |
1.01e-13 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 69.94 E-value: 1.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEdithlpahevvdrgIILIPEGRQLFPDmTVRE 95
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR--------------ISFSPQTSWIMPG-TIKD 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGT------YRRAARAAQesrMEEVLELFP-RVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPI 168
Cdd:TIGR01271 506 NIIFGLsydeyrYTSVIKACQ---LEEDIALFPeKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 597799979 169 VVSQVFD-VVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENG 210
Cdd:TIGR01271 583 TEKEIFEsCLCKLMSNKTRILVTSK--LEHLKKADKILLLHEG 623
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
16-213 |
1.94e-13 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 68.66 E-value: 1.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPR--AGKITFLGEDITHLPAHEVVDRGIILIPEGRQ---LFPD 90
Cdd:NF040905 275 VVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRSYGRniSGTVFKDGKEVDVSTVSDAIDAGLAYVTEDRKgygLNLI 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 91 MTVRENLQMGTYRRAARAAQESRMEE--VLELFprvRERL-------DQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:NF040905 355 DDIKRNITLANLGKVSRRGVIDENEEikVAEEY---RKKMniktpsvFQKVGNLSGGNQQKVVLSKWLFTDPDVLILDEP 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 162 SLGlapIVVS---QVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:NF040905 432 TRG---IDVGakyEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRIT 483
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-231 |
2.43e-13 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 68.78 E-value: 2.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGygRAtILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVgQIQPRAGKITFLGEDITHLPAHEVvDRGIILI 81
Cdd:TIGR01271 1223 LTAKYTEAG--RA-VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGVSWNSVTLQTW-RKAFGVI 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDmTVRENLQmgTYRRAA-----RAAQESRMEEVLELFP-RVRERLDQTASSLSGGEQQMVAIARGMMANPRI 155
Cdd:TIGR01271 1298 PQKVFIFSG-TFRKNLD--PYEQWSdeeiwKVAEEVGLKSVIEQFPdKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 156 LMFDEPSLGLAPIVVsQVFDVVRKIAATGTTVLIVEQNVFTTLKvANRGYVLENGRVVLADSSEALLNN-DHVRRAY 231
Cdd:TIGR01271 1375 LLLDEPSAHLDPVTL-QIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLNEtSLFKQAM 1449
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
24-191 |
3.03e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 68.30 E-value: 3.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 24 VKEGEIVTIVGANGAGKTTTLRTIVGQIQPRagkitfLGEDITHLPAHEVVD--RG-----------------------I 78
Cdd:PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPN------LGDYEEEPSWDEVLKrfRGtelqnyfkklyngeikvvhkpqyV 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPegRQLfpDMTVRENLqmgtyrraARAAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMF 158
Cdd:PRK13409 170 DLIP--KVF--KGKVRELL--------KKVDERGKLDEVVERL-GLENILDRDISELSGGELQRVAIAAALLRDADFYFF 236
|
170 180 190
....*....|....*....|....*....|....*
gi 597799979 159 DEPSLGLApivVSQVFDVVRKIA--ATGTTVLIVE 191
Cdd:PRK13409 237 DEPTSYLD---IRQRLNVARLIRelAEGKYVLVVE 268
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-222 |
6.77e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 67.44 E-value: 6.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGR-ATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLpAHEVVDRGIIL 80
Cdd:PRK10790 341 IDIDNVSFAYRDdNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL-SHSVLRQGVAM 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDmTVRENLQMGtyrraaRAAQESRMEEVLE---LFPRVRE-------RLDQTASSLSGGEQQMVAIARGMM 150
Cdd:PRK10790 420 VQQDPVVLAD-TFLANVTLG------RDISEEQVWQALEtvqLAELARSlpdglytPLGEQGNNLSVGQKQLLALARVLV 492
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 151 ANPRILMFDEPSlglAPI------VVSQVFDVVRKiaatgTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:PRK10790 493 QTPQILILDEAT---ANIdsgteqAIQQALAAVRE-----HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
2-226 |
9.32e-13 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 66.36 E-value: 9.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGyGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVG----QIQPRAGKITFLGEDITHLPAHE---VV 74
Cdd:PRK15093 9 LTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvtkdNWRVTADRMRFDDIDLLRLSPRErrkLV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 75 DRGIILI---PE---------GRQLFpdmtvrENLQMGTYRRAARAAQESRMEEVLELFPRV--RERLDQTAS---SLSG 137
Cdd:PRK15093 88 GHNVSMIfqePQscldpservGRQLM------QNIPGWTYKGRWWQRFGWRKRRAIELLHRVgiKDHKDAMRSfpyELTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 138 GEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKVANRGYVLENGRVVLAD 216
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLnQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
|
250
....*....|
gi 597799979 217 SSEALLNNDH 226
Cdd:PRK15093 242 PSKELVTTPH 251
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
2-167 |
1.01e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 65.81 E-value: 1.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY-------GRAtiLQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITfLGEDI-------TH 67
Cdd:PRK13634 3 ITFQKVEHRYqyktpfeRRA--LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT-IGERVitagkknKK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 68 L-PAHEVVdrGIIL-IPEgRQLFPDmTVRENLQMGTYR-RAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVA 144
Cdd:PRK13634 80 LkPLRKKV--GIVFqFPE-HQLFEE-TVEKDICFGPMNfGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155
|
170 180
....*....|....*....|....
gi 597799979 145 IArGMMA-NPRILMFDEPSLGLAP 167
Cdd:PRK13634 156 IA-GVLAmEPEVLVLDEPTAGLDP 178
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
17-181 |
1.38e-12 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 65.76 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD-RGIILI----PEGrQLFPDM 91
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLlRQKIQIvfqnPYG-SLNPRK 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 92 TVR----ENLQMGT-YRRAARAAQESRMEEVLELFPrvrERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP----- 161
Cdd:PRK11308 110 KVGqileEPLLINTsLSAAERREKALAMMAKVGLRP---EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPvsald 186
|
170 180 190
....*....|....*....|....*....|....*.
gi 597799979 162 ----------------SLGLAPIVVSQVFDVVRKIA 181
Cdd:PRK11308 187 vsvqaqvlnlmmdlqqELGLSYVFISHDLSVVEHIA 222
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
15-188 |
1.76e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 66.06 E-value: 1.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDitHLPAHEVVDRgIILIPEGRQLFPDMTVR 94
Cdd:PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN--RKPTKQILKR-TGFVTQDDILYPHLTVR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMGTYRRAARAAqeSRMEEVLELFPRVRE----RLDQTA------SSLSGGEQQMVAIARGMMANPRILMFDEPSLG 164
Cdd:PLN03211 159 ETLVFCSLLRLPKSL--TKQEKILVAESVISElgltKCENTIignsfiRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236
|
170 180
....*....|....*....|....
gi 597799979 165 LAPIVVSQVFDVVRKIAATGTTVL 188
Cdd:PLN03211 237 LDATAAYRLVLTLGSLAQKGKTIV 260
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
15-183 |
1.80e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 63.33 E-value: 1.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKItflgeditHLPAHEvvdrGIILIPEgRQLFPDMTVR 94
Cdd:cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI--------GMPEGE----DLLFLPQ-RPYLPLGTLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLqmgtyrraaraaqesrmeevleLFPrvrerLDQTassLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVF 174
Cdd:cd03223 82 EQL----------------------IYP-----WDDV---LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY 131
|
....*....
gi 597799979 175 DVVRKIAAT 183
Cdd:cd03223 132 QLLKELGIT 140
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
19-180 |
2.59e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 65.11 E-value: 2.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVD--RGIILIPEG--RQLFPDMTV- 93
Cdd:PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAvrSDIQMIFQDplASLNPRMTIg 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 94 ---RENLQmgTYR-RAARAAQESRMEEVLE---LFPRVRERLDQtasSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:PRK15079 119 eiiAEPLR--TYHpKLSRQEVKDRVKAMMLkvgLLPNLINRYPH---EFSGGQCQRIGIARALILEPKLIICDEPVSALD 193
|
170
....*....|....
gi 597799979 167 PIVVSQVFDVVRKI 180
Cdd:PRK15079 194 VSIQAQVVNLLQQL 207
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
16-225 |
2.80e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 65.77 E-value: 2.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvVDRGIILIPEGRQLFPDmTVRE 95
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD-LRRVLSIIPQSPVLFSG-TVRF 1328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTYRRAA---RAAQESRMEEVLELFP-RVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVS 171
Cdd:PLN03232 1329 NIDPFSEHNDAdlwEALERAHIKDVIDRNPfGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 597799979 172 QVFDVVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:PLN03232 1409 LIQRTIREEFKSCTMLVIAHR--LNTIIDCDKILVLSSGQVLEYDSPQELLSRD 1460
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-219 |
3.35e-12 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 63.89 E-value: 3.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQ--IQPRAGKITFLGEDITHLPAHEVVDRGI 78
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHpaYKILEGDILFKGESILDLEPEERAHLGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPEGRQLFPDMTvRENLQMGTYrRAARAAQESRMEEVLELFPRVRERLDQTASS-----------LSGGEQQMVAIAR 147
Cdd:CHL00131 87 FLAFQYPIEIPGVS-NADFLRLAY-NSKRKFQGLPELDPLEFLEIINEKLKLVGMDpsflsrnvnegFSGGEKKRNEILQ 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 597799979 148 GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVE--QNVFTTLKvANRGYVLENGRVVLADSSE 219
Cdd:CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIThyQRLLDYIK-PDYVHVMQNGKIIKTGDAE 237
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
10-161 |
3.50e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 65.36 E-value: 3.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDI-THL----PAHE---VVDrgiiLI 81
Cdd:PRK11147 12 SFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIvARLqqdpPRNVegtVYD----FV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQlfpdmTVRENLQmgTYRRAARAAQESRMEEVLELFPRVRERLDQTA-----------------------SSLSGG 138
Cdd:PRK11147 88 AEGIE-----EQAEYLK--RYHDISHLVETDPSEKNLNELAKLQEQLDHHNlwqlenrinevlaqlgldpdaalSSLSGG 160
|
170 180
....*....|....*....|...
gi 597799979 139 EQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK11147 161 WLRKAALGRALVSNPDVLLLDEP 183
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-162 |
6.02e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 64.57 E-value: 6.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 5 EHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITfLGEDIThlpahevvdrgIILIPEG 84
Cdd:TIGR03719 326 ENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIE-IGETVK-----------LAYVDQS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 85 RQ-LFPDMTVREN-------LQMGTYRRAARA----------AQESRmeevlelfprvrerldqtASSLSGGEQQMVAIA 146
Cdd:TIGR03719 394 RDaLDPNKTVWEEisggldiIKLGKREIPSRAyvgrfnfkgsDQQKK------------------VGQLSGGERNRVHLA 455
|
170
....*....|....*.
gi 597799979 147 RGMMANPRILMFDEPS 162
Cdd:TIGR03719 456 KTLKSGGNVLLLDEPT 471
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
14-213 |
2.88e-11 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 62.55 E-value: 2.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 14 ATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIqPRAGKITFLGEDITHLPaHEVVDRGIILIPEGRQLFPDmTV 93
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELD-PESWRKHLSWVGQNPQLPHG-TL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 94 RENLQMGTYrraarAAQESRMEEVL------ELFPRVRERLDQT----ASSLSGGEQQMVAIARGMMANPRILMFDEPSL 163
Cdd:PRK11174 440 RDNVLLGNP-----DASDEQLQQALenawvsEFLPLLPQGLDTPigdqAAGLSVGQAQRLALARALLQPCQLLLLDEPTA 514
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 597799979 164 GLAPIVVSQVFDVVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENGRVV 213
Cdd:PRK11174 515 SLDAHSEQLVMQALNAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDGQIV 562
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
17-225 |
3.03e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 62.66 E-value: 3.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEdITHLPAHEVVDrgiilipegrqlfpDMTVREN 96
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS-VAYVPQQAWIQ--------------NDSLREN 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQMGtyrraaRAAQESRMEEVLE---LFPRV-------RERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:TIGR00957 719 ILFG------KALNEKYYQQVLEacaLLPDLeilpsgdRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 167 PIVVSQVFDVV---RKIAATGTTVLIVEQNVFttLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:TIGR00957 793 AHVGKHIFEHVigpEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQELLQRD 852
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-189 |
3.88e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 62.06 E-value: 3.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVG--QIQprAGKITFLGEDITHlPAH-EVVDRGIIL 80
Cdd:NF033858 4 LEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGarKIQ--QGRVEVLGGDMAD-ARHrRAVCPRIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPE--GRQLFPDMTVRENLQ-MGTYRRAARAAQESRMEEVLE---LFPrvreRLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:NF033858 81 MPQglGKNLYPTLSVFENLDfFGRLFGQDAAERRRRIDELLRatgLAP----FADRPAGKLSGGMKQKLGLCCALIHDPD 156
|
170 180 190
....*....|....*....|....*....|....*..
gi 597799979 155 ILMFDEPSLGLAPIVVSQVFDVVRKIAAT--GTTVLI 189
Cdd:NF033858 157 LLILDEPTTGVDPLSRRQFWELIDRIRAErpGMSVLV 193
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
20-177 |
4.55e-11 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 61.30 E-value: 4.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 20 VSLEVKEGEIVTIVGANGAGKTTTLRTIVGQI----QPRAGKITFLGEDITHLPAHEvvdRGIILIPEGRQLFPD-MT-- 92
Cdd:PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIdypgRVMAEKLEFNGQDLQRISEKE---RRNLVGAEVAMIFQDpMTsl 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 93 ---------VRENLQmgTYRRAARAAQESRMEEVLEL--FPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK11022 103 npcytvgfqIMEAIK--VHQGGNKKTRRQRAIDLLNQvgIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180
|
170
....*....|....*.
gi 597799979 162 SLGLAPIVVSQVFDVV 177
Cdd:PRK11022 181 TTALDVTIQAQIIELL 196
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
12-234 |
4.61e-11 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 60.96 E-value: 4.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 12 GRaTILQDVSLEVKEGEIVTIVGANGAGKTTTLRtIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQLFPDM 91
Cdd:PRK10575 23 GR-TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 92 TVRENLQMGTYR------RAARAAQEsRMEEVLELF---PRVRERLDqtasSLSGGEQQMVAIARGMMANPRILMFDEPS 162
Cdd:PRK10575 101 TVRELVAIGRYPwhgalgRFGAADRE-KVEEAISLVglkPLAHRLVD----SLSGGERQRAWIAMLVAQDSRCLLLDEPT 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 163 LGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNNDHVRRAYlGI 234
Cdd:PRK10575 176 SALDIAHQVDVLALVHRLSQErGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIY-GI 247
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
7-188 |
5.76e-11 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 59.56 E-value: 5.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 7 VDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTL-----RTIVGQIQpraGKITFLGedithLPAHEVVDRGIILI 81
Cdd:cd03232 13 VPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLdvlagRKTAGVIT---GEILING-----RPLDKNFQRSTGYV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 PEGRQLFPDMTVRENLQMGTYRRAaraaqesrmeevlelfprvrerldqtassLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:cd03232 85 EQQDVHSPNLTVREALRFSALLRG-----------------------------LSVEQRKRLTIGVELAAKPSILFLDEP 135
|
170 180 190
....*....|....*....|....*....|.
gi 597799979 162 SLGL----APIVVSqvfdVVRKIAATGTTVL 188
Cdd:cd03232 136 TSGLdsqaAYNIVR----FLKKLADSGQAIL 162
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
17-180 |
7.23e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 60.49 E-value: 7.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEGRQLFPDMTVREN 96
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQMGTYRRA-ARAAQESRMEEVLeLFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFD 175
Cdd:PRK13642 103 VAFGMENQGiPREEMIKRVDEAL-LAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
|
....*
gi 597799979 176 VVRKI 180
Cdd:PRK13642 182 VIHEI 186
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
2-214 |
7.90e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 60.49 E-value: 7.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGYGRATI-LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDiTHLPAH--EVVDR-G 77
Cdd:PRK13633 10 VSYKYESNEESTEKLaLDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD-TSDEENlwDIRNKaG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 78 IILIPEGRQLFPDMtVRENLQMGTYRRAARAAQ-ESRMEEVLElfpRVR--ERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:PRK13633 89 MVFQNPDNQIVATI-VEEDVAFGPENLGIPPEEiRERVDESLK---KVGmyEYRRHAPHLLSGGQKQRVAIAGILAMRPE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 155 ILMFDEPSLGLAPIVVSQVFDVVRKI-AATGTTVLIVEQNVFTTLKvANRGYVLENGRVVL 214
Cdd:PRK13633 165 CIIFDEPTAMLDPSGRREVVNTIKELnKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM 224
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
17-203 |
9.62e-11 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 58.87 E-value: 9.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQiqpragkitflgedithlpahevvdRGIILIPEGRQLFPdmtvren 96
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA-------------------------SGKARLISFLPKFS------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 lqmgtYRRAARAAQESRMEEV-LELFPrvrerLDQTASSLSGGEQQMVAIARGMMANPR--ILMFDEPSLGLAPIVVSQV 173
Cdd:cd03238 59 -----RNKLIFIDQLQFLIDVgLGYLT-----LGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQL 128
|
170 180 190
....*....|....*....|....*....|
gi 597799979 174 FDVVRKIAATGTTVLIVEQNVfTTLKVANR 203
Cdd:cd03238 129 LEVIKGLIDLGNTVILIEHNL-DVLSSADW 157
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
16-161 |
1.01e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 60.72 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKiTFLGEDIThlpahevvdrgIILIPEGRQLFPDMTVRE 95
Cdd:TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGE-ARPQPGIK-----------VGYLPQEPQLDPTKTVRE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTyrRAARAAQEsRMEEVLELFP--------------RVRERL------------------------DQTASSLSG 137
Cdd:TIGR03719 88 NVEEGV--AEIKDALD-RFNEISAKYAepdadfdklaaeqaELQEIIdaadawdldsqleiamdalrcppwDADVTKLSG 164
|
170 180
....*....|....*....|....
gi 597799979 138 GEQQMVAIARGMMANPRILMFDEP 161
Cdd:TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEP 188
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-63 |
1.28e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 60.52 E-value: 1.28e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 5 EHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITfLGE 63
Cdd:PRK11819 328 ENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK-IGE 385
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
16-222 |
1.29e-10 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 60.95 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKItflgedithlpaheVVDRGIILIPEGRQLFpDMTVRE 95
Cdd:PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------------WAERSIAYVPQQAWIM-NATVRG 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTYRRAAR---AAQESRMEEVLELFPRVRE-RLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVS 171
Cdd:PTZ00243 740 NILFFDEEDAARladAVRVSQLEADLAQLGGGLEtEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 597799979 172 QVF-DVVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:PTZ00243 820 RVVeECFLGALAGKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFM 869
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
12-180 |
1.41e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 60.49 E-value: 1.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 12 GRATILQDVSLEVKEGEIVTIVGANGAGKTTT----LRTIVGQiqpraGKITFLGEdithlPAHEVVDRGiiLIPEGRQ- 86
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTglalLRLINSQ-----GEIWFDGQ-----PLHNLNRRQ--LLPVRHRi 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 87 ----------LFPDMTVRENLQMGT---YRRAARAAQESRMEEVLE---LFPRVRERLdqtASSLSGGEQQMVAIARGMM 150
Cdd:PRK15134 365 qvvfqdpnssLNPRLNVLQIIEEGLrvhQPTLSAAQREQQVIAVMEevgLDPETRHRY---PAEFSGGQRQRIAIARALI 441
|
170 180 190
....*....|....*....|....*....|
gi 597799979 151 ANPRILMFDEPSLGLAPIVVSQVFDVVRKI 180
Cdd:PRK15134 442 LKPSLIILDEPTSSLDKTVQAQILALLKSL 471
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1-160 |
1.72e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 58.34 E-value: 1.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRaTILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIIL 80
Cdd:PRK13541 1 MLSLHQLQFNIEQ-KNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 ipeGRQLfpDMTVRENLQMGtyrraaraaqeSRMEEVLELFP------RVRERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:PRK13541 80 ---GLKL--EMTVFENLKFW-----------SEIYNSAETLYaaihyfKLHDLLDEKCYSLSSGMQKIVAIARLIACQSD 143
|
....*.
gi 597799979 155 ILMFDE 160
Cdd:PRK13541 144 LWLLDE 149
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
19-224 |
1.86e-10 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 58.94 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQP----RAGKITFLGEDIThlpAHEVVDRGIILIPEG-RQLF-PDMT 92
Cdd:PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVA---PCALRGRKIATIMQNpRSAFnPLHT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 93 VREN-----LQMGTYRRAARAAQEsrMEEV-LELFPRVrerLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLA 166
Cdd:PRK10418 98 MHTHaretcLALGKPADDATLTAA--LEAVgLENAARV---LKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 597799979 167 PIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK10418 173 VVAQARILDLLESIVQKrALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
12-173 |
2.15e-10 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 59.35 E-value: 2.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 12 GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPR---AGKITFLGEDITHLPAHE---VVDRGIILIPEG- 84
Cdd:PRK09473 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANgriGGSATFNGREILNLPEKElnkLRAEQISMIFQDp 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 85 -RQLFPDMTVRENL----QMGTYRRAARAAQES-RMEEVLELfPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMF 158
Cdd:PRK09473 107 mTSLNPYMRVGEQLmevlMLHKGMSKAEAFEESvRMLDAVKM-PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 185
|
170
....*....|....*
gi 597799979 159 DEPSLGLAPIVVSQV 173
Cdd:PRK09473 186 DEPTTALDVTVQAQI 200
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
10-161 |
2.17e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 58.50 E-value: 2.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 10 GYGRATiLQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITF--LGEDITHLPAHEVVDRGIILIPEGRQL 87
Cdd:cd03290 11 GSGLAT-LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWsnKNESEPSFEATRSRNRYSVAYAAQKPW 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 88 FPDMTVRENLQMGT---YRRAARAAQESRMEEVLELFPRVRE-RLDQTASSLSGGEQQMVAIARGMMANPRILMFDEP 161
Cdd:cd03290 90 LLNATVEENITFGSpfnKQRYKAVTDACSLQPDIDLLPFGDQtEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
24-194 |
4.18e-10 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 59.26 E-value: 4.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 24 VKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIthLPAHEVVDRGIILIPEGRQLFPDMTVRENLQMgtYR 103
Cdd:TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI--LTNISDVHQNMGYCPQFDAIDDLLTGREHLYL--YA 2037
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 104 RaARAAQESRMEEV---------LELFPrvrerlDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVF 174
Cdd:TIGR01257 2038 R-LRGVPAEEIEKVanwsiqslgLSLYA------DRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLW 2110
|
170 180
....*....|....*....|
gi 597799979 175 DVVRKIAATGTTVLIVEQNV 194
Cdd:TIGR01257 2111 NTIVSIIREGRAVVLTSHSM 2130
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-224 |
6.93e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 58.33 E-value: 6.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEV--VDRGIILIPEG--RQLFPDMT 92
Cdd:PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLqaLRRDIQFIFQDpyASLDPRQT 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 93 VRENLqMGTYRRAARAAQESRMEEVLELFPRV---RERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIV 169
Cdd:PRK10261 420 VGDSI-MEPLRVHGLLPGKAAAARVAWLLERVgllPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 170 VSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSEALLNN 224
Cdd:PRK10261 499 RGQIINLLLDLQRDfGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN 554
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
19-168 |
7.76e-10 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 58.21 E-value: 7.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 19 DVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGedithlpaHEVVDRGIilipEGRQ----------LF 88
Cdd:NF033858 284 HVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFG--------QPVDAGDI----ATRRrvgymsqafsLY 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 89 PDMTVRENLQMgtyrrAAR------AAQESRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPS 162
Cdd:NF033858 352 GELTVRQNLEL-----HARlfhlpaAEIAARVAEMLERF-DLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPT 425
|
....*.
gi 597799979 163 LGLAPI 168
Cdd:NF033858 426 SGVDPV 431
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
4-190 |
1.55e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 57.33 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVG-QIQPRAGKITFLG------EDITHLPAHevvdR 76
Cdd:PRK10938 263 LNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGdHPQGYSNDLTLFGrrrgsgETIWDIKKH----I 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 77 GIIlipeGRQLFPDMTVRENLQ----------MGTYRrAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIA 146
Cdd:PRK10938 339 GYV----SSSLHLDYRVSTSVRnvilsgffdsIGIYQ-AVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 597799979 147 RGMMANPRILMFDEPSLGLAPI---VVSQVFDVVrkIAATGTTVLIV 190
Cdd:PRK10938 414 RALVKHPTLLILDEPLQGLDPLnrqLVRRFVDVL--ISEGETQLLFV 458
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
16-188 |
2.13e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 57.04 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQprAGKITfLGEDITHLPA-HEVVDRGIILIPEGRQLFPDMTVR 94
Cdd:TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT--TGVIT-GGDRLVNGRPlDSSFQRSIGYVQQQDLHLPTSTVR 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMGTY-RRAARAAQESRM---EEVLELFprvreRLDQTASSLSG--GE------QQMVAIARGMMANPRILMF-DEP 161
Cdd:TIGR00956 855 ESLRFSAYlRQPKSVSKSEKMeyvEEVIKLL-----EMESYADAVVGvpGEglnveqRKRLTIGVELVAKPKLLLFlDEP 929
|
170 180
....*....|....*....|....*..
gi 597799979 162 SLGLAPIVVSQVFDVVRKIAATGTTVL 188
Cdd:TIGR00956 930 TSGLDSQTAWSICKLMRKLADHGQAIL 956
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
17-225 |
4.14e-09 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 56.18 E-value: 4.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTT--TLRTIVGQIQprAGKITFLGEDI-----THLPAHevvdrgIILIPEGRQLFP 89
Cdd:PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTiaNLLTRFYDID--EGEILLDGHDLrdytlASLRNQ------VALVSQNVHLFN 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 90 DmTVRENLQMGTYRRAARAAQE--SRMEEVLELFPRVRERLD----QTASSLSGGEQQMVAIARGMMANPRILMFDEPSL 163
Cdd:PRK11176 431 D-TIANNIAYARTEQYSREQIEeaARMAYAMDFINKMDNGLDtvigENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 164 GL---APIVVSQVFDVVRKiaatGTTVLIVEQNVfTTLKVANRGYVLENGRVVLADSSEALLNND 225
Cdd:PRK11176 510 ALdteSERAIQAALDELQK----NRTSLVIAHRL-STIEKADEILVVEDGEIVERGTHAELLAQN 569
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
15-189 |
5.23e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 55.89 E-value: 5.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQ----PRAGKITFLGedithLPAHEVVD--RG-IILIPEGRQL 87
Cdd:TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDgfhiGVEGVITYDG-----ITPEEIKKhyRGdVVYNAETDVH 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 88 FPDMTVRENLQM-----GTYRRAARAAQESRMEEVLELFPRVRErLDQTASS---------LSGGEQQMVAIARGMMANP 153
Cdd:TIGR00956 150 FPHLTVGETLDFaarckTPQNRPDGVSREEYAKHIADVYMATYG-LSHTRNTkvgndfvrgVSGGERKRVSIAEASLGGA 228
|
170 180 190
....*....|....*....|....*....|....*..
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLI 189
Cdd:TIGR00956 229 KIQCWDNATRGLDSATALEFIRALKTSANiLDTTPLV 265
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
15-60 |
7.92e-09 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 54.19 E-value: 7.92e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITF 60
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCV 89
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-194 |
8.16e-09 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 54.44 E-value: 8.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEdithlpahevvdRGIILIPEGrqLFPDMTVREN 96
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE------------VSVIAISAG--LSGQLTGIEN 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 97 LQ-----MGTYRRAARAAqesrMEEVLElFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEpslglAPIVVS 171
Cdd:PRK13546 106 IEfkmlcMGFKRKEIKAM----TPKIIE-FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE-----ALSVGD 175
|
170 180
....*....|....*....|....*...
gi 597799979 172 QVF-----DVVRKIAATGTTVLIVEQNV 194
Cdd:PRK13546 176 QTFaqkclDKIYEFKEQNKTIFFVSHNL 203
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
4-161 |
1.00e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 54.96 E-value: 1.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 4 LEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKI---TFLgeDITHLPAH-EVVDrgii 79
Cdd:PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIhcgTKL--EVAYFDQHrAELD---- 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 lipegrqlfPDMTVRENLqmgtyrraARAAQE----SRMEEVLE-----LFPRVRERLDQTAssLSGGEQQMVAIARGMM 150
Cdd:PRK11147 396 ---------PEKTVMDNL--------AEGKQEvmvnGRPRHVLGylqdfLFHPKRAMTPVKA--LSGGERNRLLLARLFL 456
|
170
....*....|.
gi 597799979 151 ANPRILMFDEP 161
Cdd:PRK11147 457 KPSNLLILDEP 467
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
16-161 |
1.08e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 54.74 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKiTFLGEDIThlpahevvdrgIILIPEGRQLFPDMTVRE 95
Cdd:PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGE-ARPAPGIK-----------VGYLPQEPQLDPEKTVRE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQMGTyrRAARAAQEsRMEEVLELFP--------------RVRERL------------------------DQTASSLSG 137
Cdd:PRK11819 90 NVEEGV--AEVKAALD-RFNEIYAAYAepdadfdalaaeqgELQEIIdaadawdldsqleiamdalrcppwDAKVTKLSG 166
|
170 180
....*....|....*....|....
gi 597799979 138 GEQQMVAIARGMMANPRILMFDEP 161
Cdd:PRK11819 167 GERRRVALCRLLLEKPDMLLLDEP 190
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
23-208 |
1.16e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 52.96 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 23 EVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITflgedithlpahevvdrgiilipegrqlfpdmtvrenlqmgty 102
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE------------------------------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 103 rraaraaqesrmeevlelFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAA 182
Cdd:cd03222 58 ------------------WDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE 119
|
170 180
....*....|....*....|....*..
gi 597799979 183 TGT-TVLIVEQNVFTTLKVANRGYVLE 208
Cdd:cd03222 120 EGKkTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
21-190 |
1.28e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 54.64 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 21 SLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAG-------KITFLG-EDITHLPAHEVVDRGIILIPEGRQLFpDMT 92
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGerqsqfsHITRLSfEQLQKLVSDEWQRNNTDMLSPGEDDT-GRT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 93 VRENLQMGTYRRAaraaqesRMEEVLELFpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQ 172
Cdd:PRK10938 102 TAEIIQDEVKDPA-------RCEQLAQQF-GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173
|
170
....*....|....*....
gi 597799979 173 VFDVVRKIAATGTT-VLIV 190
Cdd:PRK10938 174 LAELLASLHQSGITlVLVL 192
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-162 |
1.38e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 54.41 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFL-GEDITHLPAHEVvdrgii 79
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAkGIKLGYFAQHQL------ 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 lipegRQLFPDMTVRENLQmgtyrRAARAAQESRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:PRK10636 386 -----EFLRADESPLQHLA-----RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD 455
|
...
gi 597799979 160 EPS 162
Cdd:PRK10636 456 EPT 458
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
16-222 |
1.67e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 54.57 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIILIPEGRQLFPDmTVRE 95
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK-ITIIPQDPVLFSG-SLRM 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQ-MGTYRRAA--RAAQESRMEEVLELFPrvrERLDQTAS----SLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPI 168
Cdd:TIGR00957 1379 NLDpFSQYSDEEvwWALELAHLKTFVSALP---DKLDHECAeggeNLSVGQRQLVCLARALLRKTKILVLDEATAAVDLE 1455
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 597799979 169 VVSQVFDVVRKIAATGTTVLIVEQnvFTTLKVANRGYVLENGRVVLADSSEALL 222
Cdd:TIGR00957 1456 TDNLIQSTIRTQFEDCTVLTIAHR--LNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
17-160 |
1.84e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 54.13 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKItflgeDITHLPAhevvdrgiiLIPEGRQLFPDMTVREN 96
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAA---------LIAISSGLNGQLTGIEN 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 597799979 97 -----LQMGTYRraaraaqesrmEEVLELFPRVRERLD------QTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:PRK13545 106 ielkgLMMGLTK-----------EKIKEIIPEIIEFADigkfiyQPVKTYSSGMKSRLGFAISVHINPDILVIDE 169
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-165 |
5.58e-08 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 51.72 E-value: 5.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 1 MLTLEHVDAGYGRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVG--QIQPRAGKITFLGEDITHLPAHEVVDRGI 78
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGreDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ILIPEGRQLFPDMTVRENLQMGT-----YRRAA---RAAQESRMEEVLELFPRVRERLDQTAS-SLSGGEQQMVAIARGM 149
Cdd:PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALnavrsYRGQEpldRFDFQDLMEEKIALLKMPEDLLTRSVNvGFSGGEKKRNDILQMA 160
|
170
....*....|....*.
gi 597799979 150 MANPRILMFDEPSLGL 165
Cdd:PRK09580 161 VLEPELCILDESDSGL 176
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
5-213 |
5.69e-08 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 52.10 E-value: 5.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 5 EHVDAgygratiLQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIILI--- 81
Cdd:PRK15112 24 QTVEA-------VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR-IRMIfqd 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 ------PEGR--QLFpDMTVRENLQMGTYRRAARAAQESRMEEVLelfprvRERLDQTASSLSGGEQQMVAIARGMMANP 153
Cdd:PRK15112 96 pstslnPRQRisQIL-DFPLRLNTDLEPEQREKQIIETLRQVGLL------PDHASYYPHMLAPGQKQRLGLARALILRP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 597799979 154 RILMFDEPSLGLAPIVVSQVFDVVRKIAAT-GTTVLIVEQNVFTTLKVANRGYVLENGRVV 213
Cdd:PRK15112 169 KVIIADEALASLDMSMRSQLINLMLELQEKqGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
16-226 |
7.33e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 52.43 E-value: 7.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDR-GIilIPEGRQLFPDmTVR 94
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVlGI--IPQAPVLFSG-TVR 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 95 ENLQMGTYRRAA---RAAQESRMEEVLELFPR-VRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDEpslglAPIVV 170
Cdd:PLN03130 1331 FNLDPFNEHNDAdlwESLERAHLKDVIRRNSLgLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE-----ATAAV 1405
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 171 SQVFDVVrkIAAT------GTTVLIVEQNVFTTLKvANRGYVLENGRVVLADSSEALLNNDH 226
Cdd:PLN03130 1406 DVRTDAL--IQKTireefkSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEG 1464
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
15-160 |
7.98e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 52.41 E-value: 7.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 15 TILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIILIPEGRQLFPDmTVR 94
Cdd:PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR-LAVVSQTPFLFSD-TVA 406
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 597799979 95 ENLQMG-------TYRRAARAAqeSRMEEVLELFPRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFDE 160
Cdd:PRK10789 407 NNIALGrpdatqqEIEHVARLA--SVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
55-165 |
9.40e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 52.34 E-value: 9.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 55 AGKITFLGEDITHLPAHEVvdRGIILIPEGRQLFPDMTVRENLQMG----TYRRAARAAQESRMEEVLELFP-RVRERLD 129
Cdd:PTZ00265 1276 SGKILLDGVDICDYNLKDL--RNLFSIVSQEPMLFNMSIYENIKFGkedaTREDVKRACKFAAIDEFIESLPnKYDTNVG 1353
|
90 100 110
....*....|....*....|....*....|....*.
gi 597799979 130 QTASSLSGGEQQMVAIARGMMANPRILMFDEPSLGL 165
Cdd:PTZ00265 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSL 1389
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
128-226 |
1.37e-07 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 51.75 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 128 LDQTASSLSGGEQQMVAIARGMMANPRILMF--DEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVfTTLKVANR-- 203
Cdd:PRK00635 470 PERALATLSGGEQERTALAKHLGAELIGITYilDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE-QMISLADRii 548
|
90 100
....*....|....*....|....*..
gi 597799979 204 ----GYVLENGRVVLADSSEALLNNDH 226
Cdd:PRK00635 549 digpGAGIFGGEVLFNGSPREFLAKSD 575
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
127-210 |
2.50e-07 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 50.78 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 127 RLDQTASSLSGGEQQMVAIARGMMA---NPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVfTTLKVANr 203
Cdd:TIGR00630 822 RLGQPATTLSGGEAQRIKLAKELSKrstGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNL-DVIKTAD- 899
|
....*..
gi 597799979 204 gYVLENG 210
Cdd:TIGR00630 900 -YIIDLG 905
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
132-209 |
3.02e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 50.80 E-value: 3.02e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 132 ASSLSGGEQQMVAIARGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANRGYVLEN 209
Cdd:PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
13-188 |
4.32e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 50.23 E-value: 4.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 13 RATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQiqPRAGKITflGE-DITHLPAHEVVDRGIILIPEGRQLF-PD 90
Cdd:PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIE--GDiRISGFPKKQETFARISGYCEQNDIHsPQ 967
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 91 MTVRENLQMGTYRR-AARAAQESRM---EEVLELFprvreRLDQTASS---------LSGGEQQMVAIARGMMANPRILM 157
Cdd:PLN03140 968 VTVRESLIYSAFLRlPKEVSKEEKMmfvDEVMELV-----ELDNLKDAivglpgvtgLSTEQRKRLTIAVELVANPSIIF 1042
|
170 180 190
....*....|....*....|....*....|.
gi 597799979 158 FDEPSLGLAPIVVSQVFDVVRKIAATGTTVL 188
Cdd:PLN03140 1043 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1073
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
20-66 |
6.98e-07 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 49.41 E-value: 6.98e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 597799979 20 VSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIT 66
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVT 397
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
16-222 |
1.17e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 47.98 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 16 ILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRgIILIPEGRQLFPDmTVRE 95
Cdd:cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR-LSIILQDPILFSG-SIRF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 96 NLQmgtyrrAARAAQESRMEEVLELfprvrERLDQTASSLSGG---------------EQQMVAIARGMMANPRILMFDE 160
Cdd:cd03288 114 NLD------PECKCTDDRLWEALEI-----AQLKNMVKSLPGGldavvteggenfsvgQRQLFCLARAFVRKSSILIMDE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 161 PSLGLaPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKvANRGYVLENGRVVLADSSEALL 222
Cdd:cd03288 183 ATASI-DMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLL 242
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
115-193 |
1.25e-06 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 47.99 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 115 EEVLELF---PRVRERLD-------------QTASSLSGGEQQMVAIAR--GMMANPRIL-MFDEPSLGLAPIVVSQVFD 175
Cdd:cd03271 134 EEALEFFeniPKIARKLQtlcdvglgyiklgQPATTLSGGEAQRIKLAKelSKRSTGKTLyILDEPTTGLHFHDVKKLLE 213
|
90
....*....|....*...
gi 597799979 176 VVRKIAATGTTVLIVEQN 193
Cdd:cd03271 214 VLQRLVDKGNTVVVIEHN 231
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
127-191 |
1.35e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 47.64 E-value: 1.35e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 597799979 127 RLDQTASSLSGGEQQMVAIAR--GMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVE 191
Cdd:cd03270 130 TLSRSAPTLSGGEAQRIRLATqiGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVE 196
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
14-203 |
1.76e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 47.15 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 14 ATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIT------------HLPAhevvdrgiili 81
Cdd:PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATrgdrsrfmaylgHLPG----------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 82 pegrqLFPDMTVRENLQM--GTYRRAARAAQESRMEEVlelfpRVRERLDQTASSLSGGEQQMVAIARGMMANPRILMFD 159
Cdd:PRK13543 93 -----LKADLSTLENLHFlcGLHGRRAKQMPGSALAIV-----GLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 597799979 160 EPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFTTLKVANR 203
Cdd:PRK13543 163 EPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTR 206
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
133-210 |
2.26e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 48.29 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 133 SSLSGGEQQMVAIARGMMA---NPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVFtTLKVANrgYVLEN 209
Cdd:PRK00635 808 SSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VVKVAD--YVLEL 884
|
.
gi 597799979 210 G 210
Cdd:PRK00635 885 G 885
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
115-193 |
7.09e-06 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 46.56 E-value: 7.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 115 EEVLELF---PRVRERLD-------------QTASSLSGGEQQMVAIAR--GMMANPRIL-MFDEPSLGLAPIVVSQVFD 175
Cdd:COG0178 791 EEALEFFeniPKIARKLQtlqdvglgyiklgQPATTLSGGEAQRVKLASelSKRSTGKTLyILDEPTTGLHFHDIRKLLE 870
|
90
....*....|....*...
gi 597799979 176 VVRKIAATGTTVLIVEQN 193
Cdd:COG0178 871 VLHRLVDKGNTVVVIEHN 888
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-219 |
1.14e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 45.62 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITfLGEDITHLPAHEVVD------------RG----IIL 80
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ-CDKMLLRRRSRQVIElseqsaaqmrhvRGadmaMIF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 81 IPEGRQLFPDMTVREN------LQMGTYRRAARAAQESRMEEVLelFPRVRERLDQTASSLSGGEQQMVAIARGMMANPR 154
Cdd:PRK10261 111 QEPMTSLNPVFTVGEQiaesirLHQGASREEAMVEAKRMLDQVR--IPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 597799979 155 ILMFDEPSLGLAPIVVSQVFDVVRKIAA-TGTTVLIVEQNVFTTLKVANRGYVLENGRVVLADSSE 219
Cdd:PRK10261 189 VLIADEPTTALDVTIQAQILQLIKVLQKeMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVE 254
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
128-233 |
1.18e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 45.77 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 128 LDQTASSLSGGEQQMVAIAR-------GMManpriLMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLIVEQNVfTTLKV 200
Cdd:TIGR00630 482 LSRAAGTLSGGEAQRIRLATqigsgltGVL-----YVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHDE-DTIRA 555
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 597799979 201 ANR------GYVLENGRVVLADSSEALL-NNDHVRRAYLG 233
Cdd:TIGR00630 556 ADYvidigpGAGEHGGEVVASGTPEEILaNPDSLTGQYLS 595
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
2-189 |
1.99e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 45.15 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 2 LTLEHVDAGY--GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEvVDRGII 79
Cdd:PTZ00243 1309 LVFEGVQMRYreGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRE-LRRQFS 1387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 80 LIPEGRQLFpDMTVRENLQMGTyrrAARAAQESRMEEVLELFPRV-------RERLDQTASSLSGGEQQMVAIARGMMAN 152
Cdd:PTZ00243 1388 MIPQDPVLF-DGTVRQNVDPFL---EASSAEVWAALELVGLRERVasesegiDSRVLEGGSNYSVGQRQLMCMARALLKK 1463
|
170 180 190
....*....|....*....|....*....|....*....
gi 597799979 153 PR--ILMfDEPSLGLAPIVVSQVFDVVRKIAATGTTVLI 189
Cdd:PTZ00243 1464 GSgfILM-DEATANIDPALDRQIQATVMSAFSAYTVITI 1501
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
17-189 |
1.63e-04 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 41.91 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGeIVTIVGANGAGKTTTLRTI-------------------VGQIQPRAGKITF---------LGEDITHL 68
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILEALrlllgpsssrkfdeedfylGDDPDLPEIEIELtfgsllsrlLRLLLKEE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 69 PAHEVVDRGIILIPEGRQLFPDMT------VRENLQMGTYRRAARAAQESRMEEVLELfpRVRERLDQTASSLSGGEQQM 142
Cdd:COG3593 93 DKEELEEALEELNEELKEALKALNellseyLKELLDGLDLELELSLDELEDLLKSLSL--RIEDGKELPLDRLGSGFQRL 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 597799979 143 VAIA-------RGMMANPRILMFDEPSLGLAPIVVSQVFDVVRKIAATGTTVLI 189
Cdd:COG3593 171 ILLAllsalaeLKRAPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQVII 224
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
12-162 |
2.35e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 41.69 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 12 GRATILQDVSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLG--------EDITHL--PAHEVV---DRgi 78
Cdd:PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGnwqlawvnQETPALpqPALEYVidgDR-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 79 ilipEGRQLfpdmtvRENLQMGTYRRAARAAQ--------------ESRMEEVLELFPRVRERLDQTASSLSGGEQQMVA 144
Cdd:PRK10636 90 ----EYRQL------EAQLHDANERNDGHAIAtihgkldaidawtiRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159
|
170
....*....|....*...
gi 597799979 145 IARGMMANPRILMFDEPS 162
Cdd:PRK10636 160 LAQALICRSDLLLLDEPT 177
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
20-66 |
4.38e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 40.73 E-value: 4.38e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 597799979 20 VSLEVKEGEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDIT 66
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVT 388
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
27-84 |
5.13e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.28 E-value: 5.13e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 597799979 27 GEIVTIVGANGAGKTTTLRTIVGQIQPRAGKITFLGEDITHLPAHEVVDRGIILIPEG 84
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKA 59
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
17-167 |
1.02e-03 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 39.21 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 17 LQDVSLEVKEGEIVT-IVGANGAGKTTTLRTIV---GQIQPRAGKITFLGEDITHlpaHEVVDRG--IILIPEGRQLF-- 88
Cdd:COG3950 14 FEDLEIDFDNPPRLTvLVGENGSGKTTLLEAIAlalSGLLSRLDDVKFRKLLIRN---GEFGDSAklILYYGTSRLLLdg 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 89 ------------------------PDMTVRENLQ-MGTYRRAARAAQESRMEEVLELF-------------PRVRERLDQ 130
Cdd:COG3950 91 plkklerlkeeyfsrldgydslldEDSNLREFLEwLREYLEDLENKLSDELDEKLEAVrealnkllpdfkdIRIDRDPGR 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 597799979 131 -----------TASSLSGGEQQMVAIA-----RGMMANPR---------ILMFDEPSLGLAP 167
Cdd:COG3950 171 lvildkngeelPLNQLSDGERSLLALVgdlarRLAELNPAlenplegegIVLIDEIDLHLHP 232
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
115-193 |
1.73e-03 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 39.29 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 115 EEVLELF---PRVRERLD-------------QTASSLSGGEQQMVAIAR--GMMANPRIL-MFDEPSLGLAPIVVSQVFD 175
Cdd:PRK00349 795 EEALEFFeaiPKIARKLQtlvdvglgyiklgQPATTLSGGEAQRVKLAKelSKRSTGKTLyILDEPTTGLHFEDIRKLLE 874
|
90
....*....|....*...
gi 597799979 176 VVRKIAATGTTVLIVEQN 193
Cdd:PRK00349 875 VLHRLVDKGNTVVVIEHN 892
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
18-191 |
8.99e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 35.80 E-value: 8.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 18 QDVSLEvkEGEIVTIVGANGAGKTTTLRTIvgqiqpragkITFLGEDITHLPAHEVVDRGIILipegrqlfpdmtvrenl 97
Cdd:cd03227 14 NDVTFG--EGSLTIITGPNGSGKSTILDAI----------GLALGGAQSATRRRSGVKAGCIV----------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 597799979 98 qmgtyrraaraaqesrmeevlelfPRVRERLDQTASSLSGGEQQMVAIA---RGMMANPRIL-MFDEPSLGLAPIVVSQV 173
Cdd:cd03227 65 ------------------------AAVSAELIFTRLQLSGGEKELSALAlilALASLKPRPLyILDEIDRGLDPRDGQAL 120
|
170
....*....|....*...
gi 597799979 174 FDVVRKIAATGTTVLIVE 191
Cdd:cd03227 121 AEAILEHLVKGAQVIVIT 138
|
|
| |
