|
Name |
Accession |
Description |
Interval |
E-value |
| ArgS |
COG0018 |
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ... |
1-583 |
0e+00 |
|
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439789 [Multi-domain] Cd Length: 574 Bit Score: 522.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 1 MNLEGKIKTAIDKVLKDF--GVPGGEFKVEHPENEAHGDYSANVALVAGGG-----RDLAEKITEKLRADkgleEIASKI 73
Cdd:COG0018 1 MNIKEELAEAIAAALAALgaGLEEPDILVERPKDPEHGDYATNVAMQLAKPlkknpREIAEEIAEALDAD----PLVEKV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 74 KVAGAGFINISIKTDHLITQAVELLKEGYMGGKSTRRQGfvgQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEG 153
Cdd:COG0018 77 EIAGPGFINFFLSPAALAAVLKEILADGEDYGRSDAGKG---KKVVVEYVSANPTKPLHVGHLRGAVIGDALARILEAAG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 154 AEVKRVNYQGDVGLHVAKAIWGMKQMIQKDIDLNSLSkkslperQKFMGQAYAMGATAYEEDKKAKEEIEVLNKKIYELD 233
Cdd:COG0018 154 YDVTRENYINDAGTQIGKLALSLERYGEEEIEPESKP-------DGYLGDLYVKFHKEYEEDPELEDIARELLAKLEPGD 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 234 DDVRQLYEKGRGWSLEYFETIYKRLGTKFDDYFFEREVGQVGL--KLVKEFLKKGVFEESQGAVVFPGEKYG-LHTRVFV 310
Cdd:COG0018 227 EEALELWKKAVDWSLEEIKEDLKRLGVEFDVWFSESSLYDSGAveEVVEELKEKGLLYESDGALWVRLTEFGdDKDRVLV 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 311 NKLGLPTYEAKDLGLAPTKYGRYQYDQSIIVTANEIDEYFKVVIAALKKINPKLGKKTRHVSHGMVKLPEG-KMSSRTGK 389
Cdd:COG0018 307 KSDGTYTYFTTDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGYDPAKDLEHLLFGMVNLRDGeKMSTRAGT 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 390 IVTGEWLLDEARARALKIMAEAEISEEEKEIIaeQVGQAAVKYALLKTGIGQDVVFNFGTSVSFEGNSGPYLQYTYARAQ 469
Cdd:COG0018 387 VVTLDDLLDEAVERAREIIEEKSEEEKEEIAE--QVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNTNPYVQYAHARIC 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 470 SVLAKSETRSTKHEKISDfgfrISDLAPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFYNKMPILKAK 549
Cdd:COG0018 465 SILRKAGEELDGLAEADL----SLLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFHSFYNACRILKAE 540
|
570 580 590
....*....|....*....|....*....|....
gi 837349806 550 DEKIKSLRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:COG0018 541 DEELRAARLALVAATAQVLKNGLGLLGISAPERM 574
|
|
| argS |
PRK01611 |
arginyl-tRNA synthetase; Reviewed |
1-583 |
2.76e-125 |
|
arginyl-tRNA synthetase; Reviewed
Pssm-ID: 234964 [Multi-domain] Cd Length: 507 Bit Score: 377.96 E-value: 2.76e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 1 MNLEGKIKTAIDKVLKDFGVP-GGEFKVEHPENEAHGDYSANVALV----AGGG-RDLAEKITEKLradkgleeiaSKIK 74
Cdd:PRK01611 3 MDIKELLAEALAAALEAGGLPeLPAVLIERPKDPEHGDYATNVAMQlakkLKKNpREIAEEIVEAI----------EKVE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 75 VAGAGFINISIKTDHLITQAVELLKEGYMGGKSTRRQGfvgQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGA 154
Cdd:PRK01611 73 IAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKG---KKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGY 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 155 EVKRVNYQGDVGLHVAKAIWGMKQMIQKdidlnslskkslperqkfmgqayamgatayeedkkakeeievlnkkiyeldd 234
Cdd:PRK01611 150 DVTREYYVNDAGTQIGMLIASLELLWRK---------------------------------------------------- 177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 235 dvrqlyekGRGWSLEYFETIYKRLGTKFDDYFFEREV---GQVGlKLVKEFLKKG-VFEESQGAVVFPGEKYGL-HTRVF 309
Cdd:PRK01611 178 --------AVDISLDEIKEDLDRLGVHFDVWFSESELyynGKVD-EVVEDLKEKGlLYVESDGALWVRLTEFGDdKDRVL 248
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 310 VNKLGLPTYEAKDLGLAPTKYGRYqyDQSIIVTANEIDEYFKVVIAALKK--INPKLGKKTRHVSHGMVKLPEG-KMSSR 386
Cdd:PRK01611 249 IKSDGTYTYFTRDIAYHLYKFERF--DRVIYVVGADHHGHFKRLKAALKAlgYDPDALEVLLHQMVGLVRGGEGvKMSTR 326
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 387 TGKIVTGEWLLDEARARALKIMAEAEISEeekeiiaeQVGQAAVKYALLKTGIGQDVVFNFGTSVSFEGNSGPYLQYTYA 466
Cdd:PRK01611 327 AGNVVTLDDLLDEAVGRARELIEEKEIAE--------AVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHA 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 467 RAQSVLAKSETRStkhekISDFGFRISDlaPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFYNKMPiL 546
Cdd:PRK01611 399 RICSILRKAAEAG-----IDLLLALLTE--EEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVL-L 470
|
570 580 590
....*....|....*....|....*....|....*..
gi 837349806 547 KAKDEKIKSLRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:PRK01611 471 KDEEEELRNARLALVKATAQVLKNGLDLLGISAPERM 507
|
|
| argS |
TIGR00456 |
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed ... |
6-583 |
3.50e-99 |
|
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273085 [Multi-domain] Cd Length: 563 Bit Score: 312.35 E-value: 3.50e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 6 KIKTAIDKVLKDFGVP-GGEFKVEHPENEAHGDYSANVALVAGGG-----RDLAEKITEKLRadkgLEEIASKIKVAGAg 79
Cdd:TIGR00456 4 LLKEEISQALLKAGLSkESEILVEETPNPEFGDYASNIAFPLAKVlkkapRQIAEEIVLKLK----TGEIIEKVEAAGP- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 80 FINISIKTDHLIT---QAVELLKEGYmgGKSTRRqgfvGQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGAEV 156
Cdd:TIGR00456 79 FINFFLSPQKLLErliQKILTQKEKY--GSKKLK----NKKIIIEFSSANPAGPLHVGHLRNAIIGDSLARILEFLGYDV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 157 KRVNYQGDVGLHVAKAIWGMKQMIQKdiDLNSLSKKSLperqKFMGQAYAMGATAYEEDKKAKEEIEVLNKKIYELDDDV 236
Cdd:TIGR00456 153 IREYYVNDWGRQFGLLALGVEKFGNE--ALNIAVKKPD----HGLEGFYVEINKRLEENEELEEEARELFVKLESGDEET 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 237 RQLYEKGRGWSLEYFETIYKRLGTKFDDYFFEREVGQVG--LKLVKEFLKKGVFEEsQGAVVFPGEKYG-LHTRVFVNKL 313
Cdd:TIGR00456 227 IKLWKRLVEYSLEGIKETYDRLNIHFDSFVWEGESVKNGmlPKVLEDLKEKGLVVE-DGALWLDLTLFGdKKDRVLQKSD 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 314 GLPTYEAKDLGLAPTKYGRyQYDQSIIVTANEIDEYFKVVIAALKKINPKlGKKTRHVSHGMVklPEGKMSSRTGKIVTG 393
Cdd:TIGR00456 306 GTYLYLTTDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQMFAILEKLGYK-KKELEHLNFGMV--PLYSMKTRRGNVISL 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 394 EWLLDEARARALKIMAEAEISEEEKEIIAeqVGQAAVKYALLKTGIGQDVVFNFGTSVSFEGNSGPYLQYTYARAQSVLA 473
Cdd:TIGR00456 382 DNLLDEASKRAGNVITIKNDLEEEKVADA--VGIGAVRYFDLSKNRTTDYVFDWDAMLSFEGNTAPYIQYAHARICSILR 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 474 KSEtrSTKHEKISDFGFRISdlaPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFYNKMPILKAKDEKI 553
Cdd:TIGR00456 460 KAE--IDGEKLIADDFELLE---EKEKELLKLLLQFPEVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLDAENELA 534
|
570 580 590
....*....|....*....|....*....|
gi 837349806 554 KSlRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:TIGR00456 535 AA-RLALLKATRQTLKNGLDLLGIEPPERM 563
|
|
| Anticodon_Ia_Arg |
cd07956 |
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA ... |
424-583 |
2.67e-47 |
|
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Pssm-ID: 153410 [Multi-domain] Cd Length: 156 Bit Score: 162.77 E-value: 2.67e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 424 QVGQAAVKYALLKTGIGQDVVFNFGTSVSFEGNSGPYLQYTYARAQSVLAKSETRSTKhEKISDFgfriSDLA-PEELAV 502
Cdd:cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEA-EADADL----SLLPePDERDL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 503 LRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFYNKMPILKAkDEKIKSLRLLLTAATAEVVKRGLYLLGIQSPEK 582
Cdd:cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGA-EEELRNARLALVAAARQVLANGLDLLGIEAPER 155
|
.
gi 837349806 583 M 583
Cdd:cd07956 156 M 156
|
|
| DALR_1 |
smart00836 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
461-583 |
1.37e-34 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Pssm-ID: 214846 [Multi-domain] Cd Length: 122 Bit Score: 126.92 E-value: 1.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 461 LQYTYARAQSVLAKSETRSTKHEKISDFGF-RISDlaPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSF 539
Cdd:smart00836 1 VQYAHARICSILRKAGEAGETLPDIADADLsLLTE--PEEWALLLKLARFPEVLEAAAEQLEPHRLANYLYDLAAAFHSF 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 837349806 540 YNKMPILKAKDEKIKSLRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:smart00836 79 YNRVRVLGEENPELRKARLALLKAVRQVLANGLRLLGISAPERM 122
|
|
| tRNA-synt_1d |
pfam00750 |
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be ... |
105-447 |
1.91e-32 |
|
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Pssm-ID: 395607 [Multi-domain] Cd Length: 348 Bit Score: 128.07 E-value: 1.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 105 GKSTRRQgfvgQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGAEVKRVNYQGDVGLHVAKAIWGMKQMIQKdi 184
Cdd:pfam00750 12 GKASREK----KKVVVDFSSPNIAKEMHVGHLRSTIIGDALSRLLEFLGHSVIRANHVGDWGTQFGMLIAGLEKYQDE-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 185 dlNSLSKKSLPERQKFmgqaYAMGATAYEEDKKAKEEIEVLNKKIYELDDDVRqlyekgRGWSL--EYFETIYKRLGTKF 262
Cdd:pfam00750 86 --KTLQEMPIQDLEDF----YREAKKHYDEEEEFAERARNYVVKLQSGDEYWR------RMWKLivDITMTQNQRLYDRL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 263 DDYFFER--EVGQVGL-KLVKEFLKKGVFEESQGA-VVFPGEKYGLHTRVFVNKLGLPTYEAKDLGLAPTKYGRYQYDQS 338
Cdd:pfam00750 154 DVTLTEMgeSLYNPMMnEIVKDFKKNGLVVEIDGAlVVFLDEFGKPMGVIVQKSDGGYLYTTTDIAAAKYRYETLHADRM 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 339 IIVTANEIDEYFKVVIAALKKIN--PKlGKKTRHVSHGMVKLPEGK-MSSRTGKIVTGEWLLDEARARALKIMAEAEISE 415
Cdd:pfam00750 234 LYVIDSRQSQHMQQAFAILRKAGyvPE-SKDLEHINFGMVLGKDGKpFKTRKGGTVKLADLLDEALERALQLIMEKNKDK 312
|
330 340 350
....*....|....*....|....*....|....*.
gi 837349806 416 EEKE----IIAEQVGQAAVKYALLKTGIGQDVVFNF 447
Cdd:pfam00750 313 ILQAdeleAVADAVGIGAIKYADLSKNRTNDYIFDW 348
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ArgS |
COG0018 |
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ... |
1-583 |
0e+00 |
|
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439789 [Multi-domain] Cd Length: 574 Bit Score: 522.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 1 MNLEGKIKTAIDKVLKDF--GVPGGEFKVEHPENEAHGDYSANVALVAGGG-----RDLAEKITEKLRADkgleEIASKI 73
Cdd:COG0018 1 MNIKEELAEAIAAALAALgaGLEEPDILVERPKDPEHGDYATNVAMQLAKPlkknpREIAEEIAEALDAD----PLVEKV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 74 KVAGAGFINISIKTDHLITQAVELLKEGYMGGKSTRRQGfvgQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEG 153
Cdd:COG0018 77 EIAGPGFINFFLSPAALAAVLKEILADGEDYGRSDAGKG---KKVVVEYVSANPTKPLHVGHLRGAVIGDALARILEAAG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 154 AEVKRVNYQGDVGLHVAKAIWGMKQMIQKDIDLNSLSkkslperQKFMGQAYAMGATAYEEDKKAKEEIEVLNKKIYELD 233
Cdd:COG0018 154 YDVTRENYINDAGTQIGKLALSLERYGEEEIEPESKP-------DGYLGDLYVKFHKEYEEDPELEDIARELLAKLEPGD 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 234 DDVRQLYEKGRGWSLEYFETIYKRLGTKFDDYFFEREVGQVGL--KLVKEFLKKGVFEESQGAVVFPGEKYG-LHTRVFV 310
Cdd:COG0018 227 EEALELWKKAVDWSLEEIKEDLKRLGVEFDVWFSESSLYDSGAveEVVEELKEKGLLYESDGALWVRLTEFGdDKDRVLV 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 311 NKLGLPTYEAKDLGLAPTKYGRYQYDQSIIVTANEIDEYFKVVIAALKKINPKLGKKTRHVSHGMVKLPEG-KMSSRTGK 389
Cdd:COG0018 307 KSDGTYTYFTTDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGYDPAKDLEHLLFGMVNLRDGeKMSTRAGT 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 390 IVTGEWLLDEARARALKIMAEAEISEEEKEIIaeQVGQAAVKYALLKTGIGQDVVFNFGTSVSFEGNSGPYLQYTYARAQ 469
Cdd:COG0018 387 VVTLDDLLDEAVERAREIIEEKSEEEKEEIAE--QVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNTNPYVQYAHARIC 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 470 SVLAKSETRSTKHEKISDfgfrISDLAPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFYNKMPILKAK 549
Cdd:COG0018 465 SILRKAGEELDGLAEADL----SLLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFHSFYNACRILKAE 540
|
570 580 590
....*....|....*....|....*....|....
gi 837349806 550 DEKIKSLRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:COG0018 541 DEELRAARLALVAATAQVLKNGLGLLGISAPERM 574
|
|
| argS |
PRK01611 |
arginyl-tRNA synthetase; Reviewed |
1-583 |
2.76e-125 |
|
arginyl-tRNA synthetase; Reviewed
Pssm-ID: 234964 [Multi-domain] Cd Length: 507 Bit Score: 377.96 E-value: 2.76e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 1 MNLEGKIKTAIDKVLKDFGVP-GGEFKVEHPENEAHGDYSANVALV----AGGG-RDLAEKITEKLradkgleeiaSKIK 74
Cdd:PRK01611 3 MDIKELLAEALAAALEAGGLPeLPAVLIERPKDPEHGDYATNVAMQlakkLKKNpREIAEEIVEAI----------EKVE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 75 VAGAGFINISIKTDHLITQAVELLKEGYMGGKSTRRQGfvgQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGA 154
Cdd:PRK01611 73 IAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKG---KKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGY 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 155 EVKRVNYQGDVGLHVAKAIWGMKQMIQKdidlnslskkslperqkfmgqayamgatayeedkkakeeievlnkkiyeldd 234
Cdd:PRK01611 150 DVTREYYVNDAGTQIGMLIASLELLWRK---------------------------------------------------- 177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 235 dvrqlyekGRGWSLEYFETIYKRLGTKFDDYFFEREV---GQVGlKLVKEFLKKG-VFEESQGAVVFPGEKYGL-HTRVF 309
Cdd:PRK01611 178 --------AVDISLDEIKEDLDRLGVHFDVWFSESELyynGKVD-EVVEDLKEKGlLYVESDGALWVRLTEFGDdKDRVL 248
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 310 VNKLGLPTYEAKDLGLAPTKYGRYqyDQSIIVTANEIDEYFKVVIAALKK--INPKLGKKTRHVSHGMVKLPEG-KMSSR 386
Cdd:PRK01611 249 IKSDGTYTYFTRDIAYHLYKFERF--DRVIYVVGADHHGHFKRLKAALKAlgYDPDALEVLLHQMVGLVRGGEGvKMSTR 326
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 387 TGKIVTGEWLLDEARARALKIMAEAEISEeekeiiaeQVGQAAVKYALLKTGIGQDVVFNFGTSVSFEGNSGPYLQYTYA 466
Cdd:PRK01611 327 AGNVVTLDDLLDEAVGRARELIEEKEIAE--------AVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHA 398
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 467 RAQSVLAKSETRStkhekISDFGFRISDlaPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFYNKMPiL 546
Cdd:PRK01611 399 RICSILRKAAEAG-----IDLLLALLTE--EEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVL-L 470
|
570 580 590
....*....|....*....|....*....|....*..
gi 837349806 547 KAKDEKIKSLRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:PRK01611 471 KDEEEELRNARLALVKATAQVLKNGLDLLGISAPERM 507
|
|
| argS |
TIGR00456 |
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed ... |
6-583 |
3.50e-99 |
|
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273085 [Multi-domain] Cd Length: 563 Bit Score: 312.35 E-value: 3.50e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 6 KIKTAIDKVLKDFGVP-GGEFKVEHPENEAHGDYSANVALVAGGG-----RDLAEKITEKLRadkgLEEIASKIKVAGAg 79
Cdd:TIGR00456 4 LLKEEISQALLKAGLSkESEILVEETPNPEFGDYASNIAFPLAKVlkkapRQIAEEIVLKLK----TGEIIEKVEAAGP- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 80 FINISIKTDHLIT---QAVELLKEGYmgGKSTRRqgfvGQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGAEV 156
Cdd:TIGR00456 79 FINFFLSPQKLLErliQKILTQKEKY--GSKKLK----NKKIIIEFSSANPAGPLHVGHLRNAIIGDSLARILEFLGYDV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 157 KRVNYQGDVGLHVAKAIWGMKQMIQKdiDLNSLSKKSLperqKFMGQAYAMGATAYEEDKKAKEEIEVLNKKIYELDDDV 236
Cdd:TIGR00456 153 IREYYVNDWGRQFGLLALGVEKFGNE--ALNIAVKKPD----HGLEGFYVEINKRLEENEELEEEARELFVKLESGDEET 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 237 RQLYEKGRGWSLEYFETIYKRLGTKFDDYFFEREVGQVG--LKLVKEFLKKGVFEEsQGAVVFPGEKYG-LHTRVFVNKL 313
Cdd:TIGR00456 227 IKLWKRLVEYSLEGIKETYDRLNIHFDSFVWEGESVKNGmlPKVLEDLKEKGLVVE-DGALWLDLTLFGdKKDRVLQKSD 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 314 GLPTYEAKDLGLAPTKYGRyQYDQSIIVTANEIDEYFKVVIAALKKINPKlGKKTRHVSHGMVklPEGKMSSRTGKIVTG 393
Cdd:TIGR00456 306 GTYLYLTTDIAYHLDKLER-GFDKMIYVWGSDHHLHIAQMFAILEKLGYK-KKELEHLNFGMV--PLYSMKTRRGNVISL 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 394 EWLLDEARARALKIMAEAEISEEEKEIIAeqVGQAAVKYALLKTGIGQDVVFNFGTSVSFEGNSGPYLQYTYARAQSVLA 473
Cdd:TIGR00456 382 DNLLDEASKRAGNVITIKNDLEEEKVADA--VGIGAVRYFDLSKNRTTDYVFDWDAMLSFEGNTAPYIQYAHARICSILR 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 474 KSEtrSTKHEKISDFGFRISdlaPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFYNKMPILKAKDEKI 553
Cdd:TIGR00456 460 KAE--IDGEKLIADDFELLE---EKEKELLKLLLQFPEVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLDAENELA 534
|
570 580 590
....*....|....*....|....*....|
gi 837349806 554 KSlRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:TIGR00456 535 AA-RLALLKATRQTLKNGLDLLGIEPPERM 563
|
|
| PLN02286 |
PLN02286 |
arginine-tRNA ligase |
19-583 |
7.54e-68 |
|
arginine-tRNA ligase
Pssm-ID: 215160 [Multi-domain] Cd Length: 576 Bit Score: 230.30 E-value: 7.54e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 19 GVPGGEFKVEHPENEAHGDYSANVAL-----VAGGG------RDLAEKITEKLRADKGLEEIAskikVAGAGFINISIKT 87
Cdd:PLN02286 17 DEPSVEPLVAACTNPKFGDYQCNNAMglwskLKGKGtsfknpRAVAQAIVKNLPASEMIESTS----VAGPGFVNVRLSA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 88 DHLITQAVELLKEGYMGGKSTRRQgfvgQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGAEVKRVNYQGDVGL 167
Cdd:PLN02286 93 SWLAKRIERMLVDGIDTWAPTLPV----KRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGT 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 168 HVAKAIWGMKQMI-------QKDI-DLNSLSKKSlpeRQKFMGqayamgatayEEDKKAKEEIEVLnkKIYELDDDVRQL 239
Cdd:PLN02286 169 QFGMLIEHLFEKFpnwesvsDQAIgDLQEFYKAA---KKRFDE----------DEEFKARAQQAVV--RLQGGDPEYRAA 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 240 YEKGRGWSLEYFETIYKRLGTKFDDY---FFEREVGQVglklVKEFLKKGVFEESQGAVVfpgekyglhtrVFVNKLGLP 316
Cdd:PLN02286 234 WAKICEISRREFEKVYQRLRVELEEKgesFYNPYIPGV----IEELESKGLVVESDGARV-----------IFVEGFDIP 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 317 ----------TYEAKDLglAPTKY--GRYQYDQSIIVTANEIDEYFKVVIAALKKIN--PKLGK-KTRHVSHGMVKLPEG 381
Cdd:PLN02286 299 livvksdggfNYASTDL--AALWYrlNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGwlPEDTYpRLEHVGFGLVLGEDG 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 382 K-MSSRTGKIVTGEWLLDEARARALKIMAEAEISEEEKEIIAEQ----VGQAAVKYALLKTGIGQDVVFNFGTSVSFEGN 456
Cdd:PLN02286 377 KrFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQaaeaVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGN 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 457 SGPYLQYTYARAQSVLAKSETRSTKHEKISDfgFRISDlaPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRF 536
Cdd:PLN02286 457 TAVYLLYAHARICSIIRKSGKDIDELKKTGK--IVLDH--PDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKF 532
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 837349806 537 NSFYNKMPILKAKDEKIkslRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:PLN02286 533 TKFYSNCKVNGSEEETS---RLLLCEATAIVMRKCFHLLGITPLYRL 576
|
|
| Anticodon_Ia_Arg |
cd07956 |
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA ... |
424-583 |
2.67e-47 |
|
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Pssm-ID: 153410 [Multi-domain] Cd Length: 156 Bit Score: 162.77 E-value: 2.67e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 424 QVGQAAVKYALLKTGIGQDVVFNFGTSVSFEGNSGPYLQYTYARAQSVLAKSETRSTKhEKISDFgfriSDLA-PEELAV 502
Cdd:cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEA-EADADL----SLLPePDERDL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 503 LRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFYNKMPILKAkDEKIKSLRLLLTAATAEVVKRGLYLLGIQSPEK 582
Cdd:cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGA-EEELRNARLALVAAARQVLANGLDLLGIEAPER 155
|
.
gi 837349806 583 M 583
Cdd:cd07956 156 M 156
|
|
| ArgRS_core |
cd00671 |
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic ... |
117-388 |
3.40e-36 |
|
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Pssm-ID: 185675 [Multi-domain] Cd Length: 212 Bit Score: 134.61 E-value: 3.40e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 117 RIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGAEVKRVNYQGDVGLHVAKAIWGmkqmiqkdidlnslskkslpe 196
Cdd:cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILS--------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 197 rqkfmgqayamgataYEEDKKAKEeievlnkkiyeldddvrqlyekgrgWSLEYFETIYKRLGTKFDDYFFEREV-GQVG 275
Cdd:cd00671 60 ---------------LEKWRKLVE-------------------------ESIKADLETYGRLDVRFDVWFGESSYlGLMG 99
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 276 lKLVKEFLKKGVFEESQGAVVFPGEKYG-LHTRVFVNKLGLPTYEAKDLGLAPTKYGRyQYDQSIIVTANEIDEYFKVVI 354
Cdd:cd00671 100 -KVVELLEELGLLYEEDGALWLDLTEFGdDKDRVLVRSDGTYTYFTRDIAYHLDKFER-GADKIIYVVGADHHGHFKRLF 177
|
250 260 270
....*....|....*....|....*....|....*
gi 837349806 355 AALKKINPKLGKKTRHVSHGMVKLP-EGKMSSRTG 388
Cdd:cd00671 178 AALELLGYDEAKKLEHLLYGMVNLPkEGKMSTRAG 212
|
|
| DALR_1 |
smart00836 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
461-583 |
1.37e-34 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Pssm-ID: 214846 [Multi-domain] Cd Length: 122 Bit Score: 126.92 E-value: 1.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 461 LQYTYARAQSVLAKSETRSTKHEKISDFGF-RISDlaPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSF 539
Cdd:smart00836 1 VQYAHARICSILRKAGEAGETLPDIADADLsLLTE--PEEWALLLKLARFPEVLEAAAEQLEPHRLANYLYDLAAAFHSF 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 837349806 540 YNKMPILKAKDEKIKSLRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:smart00836 79 YNRVRVLGEENPELRKARLALLKAVRQVLANGLRLLGISAPERM 122
|
|
| tRNA-synt_1d |
pfam00750 |
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be ... |
105-447 |
1.91e-32 |
|
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Pssm-ID: 395607 [Multi-domain] Cd Length: 348 Bit Score: 128.07 E-value: 1.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 105 GKSTRRQgfvgQRIMVEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGAEVKRVNYQGDVGLHVAKAIWGMKQMIQKdi 184
Cdd:pfam00750 12 GKASREK----KKVVVDFSSPNIAKEMHVGHLRSTIIGDALSRLLEFLGHSVIRANHVGDWGTQFGMLIAGLEKYQDE-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 185 dlNSLSKKSLPERQKFmgqaYAMGATAYEEDKKAKEEIEVLNKKIYELDDDVRqlyekgRGWSL--EYFETIYKRLGTKF 262
Cdd:pfam00750 86 --KTLQEMPIQDLEDF----YREAKKHYDEEEEFAERARNYVVKLQSGDEYWR------RMWKLivDITMTQNQRLYDRL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 263 DDYFFER--EVGQVGL-KLVKEFLKKGVFEESQGA-VVFPGEKYGLHTRVFVNKLGLPTYEAKDLGLAPTKYGRYQYDQS 338
Cdd:pfam00750 154 DVTLTEMgeSLYNPMMnEIVKDFKKNGLVVEIDGAlVVFLDEFGKPMGVIVQKSDGGYLYTTTDIAAAKYRYETLHADRM 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 339 IIVTANEIDEYFKVVIAALKKIN--PKlGKKTRHVSHGMVKLPEGK-MSSRTGKIVTGEWLLDEARARALKIMAEAEISE 415
Cdd:pfam00750 234 LYVIDSRQSQHMQQAFAILRKAGyvPE-SKDLEHINFGMVLGKDGKpFKTRKGGTVKLADLLDEALERALQLIMEKNKDK 312
|
330 340 350
....*....|....*....|....*....|....*.
gi 837349806 416 EEKE----IIAEQVGQAAVKYALLKTGIGQDVVFNF 447
Cdd:pfam00750 313 ILQAdeleAVADAVGIGAIKYADLSKNRTNDYIFDW 348
|
|
| DALR_1 |
pfam05746 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
461-583 |
7.36e-32 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteriztic conserved amino acids.
Pssm-ID: 399042 [Multi-domain] Cd Length: 117 Bit Score: 119.29 E-value: 7.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 461 LQYTYARAQSVLAKSETRSTKHEKISDFGfrisdLAPEELAVLRWLYRYGEVVDEAAAELSPNLVANFLFELAQRFNSFY 540
Cdd:pfam05746 1 LQYAHARICSILRKAGELGINLDIDADLL-----TEEEEKELLKALLQFPEVLEEAAEELEPHRLANYLYELASAFHSFY 75
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 837349806 541 NKMPILKAKDEKIKSlRLLLTAATAEVVKRGLYLLGIQSPEKM 583
Cdd:pfam05746 76 NNCRVLDEDNEERNA-RLALLKAVRQVLKNGLDLLGIEAPEKM 117
|
|
| Arg_tRNA_synt_N |
smart01016 |
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl ... |
1-85 |
1.15e-13 |
|
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Pssm-ID: 214975 [Multi-domain] Cd Length: 85 Bit Score: 66.45 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 1 MNLEGKIKTAIDKVLKDFGVPGgEFKVEHPENEAHGDYSANVALVAGGG-----RDLAEKITEKLRADKGLEeiasKIKV 75
Cdd:smart01016 1 DLLKEAIAEALKKALGVEGEPI-DIALERPKDPDHGDYATNVAFRLAKKlkknpRELAEEIAEKLPKSDLVE----KVEI 75
|
90
....*....|
gi 837349806 76 AGAGFINISI 85
Cdd:smart01016 76 AGPGFINFFL 85
|
|
| Arg_tRNA_synt_N |
pfam03485 |
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of ... |
7-85 |
9.84e-13 |
|
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Pssm-ID: 460943 [Multi-domain] Cd Length: 83 Bit Score: 63.79 E-value: 9.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 837349806 7 IKTAIDKVLKDFGVPGGE---FKVEHPENEAHGDYSANVAL----VAGGG-RDLAEKITEKLRADKGLEeiasKIKVAGA 78
Cdd:pfam03485 1 LKKAIAKALSKLGGPDLElidIVIETPKNPKFGDYATNVAMqlakKLKKNpREIAEEIAEKLEKSDIIE----KVEVAGP 76
|
....*..
gi 837349806 79 GFINISI 85
Cdd:pfam03485 77 GFINFFL 83
|
|
| class_I_aaRS_core |
cd00802 |
catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA ... |
120-166 |
6.51e-05 |
|
catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Pssm-ID: 173901 [Multi-domain] Cd Length: 143 Bit Score: 43.24 E-value: 6.51e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 837349806 120 VEFTDPNPFKEFHIGHLYSNIVGESLCRLLEVEGAEVKRVNYQGDVG 166
Cdd:cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAG 47
|
|
| |
