|
Name |
Accession |
Description |
Interval |
E-value |
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
350-1102 |
1.36e-40 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 163.42 E-value: 1.36e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 350 AQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELETQ 429
Cdd:pfam01576 355 TQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEK 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 430 VMELQDQL-----------KQGPVPAKEGLMKDLLETRELLEEVLEGKQR--VEEQLRQRERELTALKGALKEEVASRDQ 496
Cdd:pfam01576 435 LSKLQSELesvssllneaeGKNIKLSKDVSSLESQLQDTQELLQEETRQKlnLSTRLRQLEDERNSLQEQLEEEEEAKRN 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 497 EVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQkmsalvrgLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLR 576
Cdd:pfam01576 515 VERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKR--------LQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLL 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 577 MEKDEmEEELGEKMEALQRELGQARA--GAGGSRQVEELRKLQGEAervRELEQQNLQLqkktqqlSQDCAEATKARGAR 654
Cdd:pfam01576 587 VDLDH-QRQLVSNLEKKQKKFDQMLAeeKAISARYAEERDRAEAEA---REKETRALSL-------ARALEEALEAKEEL 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 655 MAAEAEAALLVQRRTAVETTLQETQGENDEFRRrilGLEQQLKETRGLAEggeaaeaRLRDKLQRLEVEKQRLEEALSEA 734
Cdd:pfam01576 656 ERTNKQLRAEMEDLVSSKDDVGKNVHELERSKR---ALEQQVEEMKTQLE-------ELEDELQATEDAKLRLEVNMQAL 725
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 735 QAEEgslaaaKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEqigED 814
Cdd:pfam01576 726 KAQF------ERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGRE---EA 796
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 815 SKQaLHQLQSQLEDYKeksrREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQ 894
Cdd:pfam01576 797 VKQ-LKKLQAQMKDLQ----RELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIA 871
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 895 GleqEAEKKRRSQDDRTRqvksLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLE 974
Cdd:pfam01576 872 S---GASGKSALQDEKRR----LEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLE 944
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 975 RQNKDLKGRLASLEGF--QKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQH---VNDQ 1049
Cdd:pfam01576 945 RQNKELKAKLQEMEGTvkSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHadqYKDQ 1024
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 229553905 1050 KDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRAL 1102
Cdd:pfam01576 1025 AEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDATESNESMNREVSTL 1077
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
564-1129 |
5.40e-25 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 112.72 E-value: 5.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 564 ELRAAKQELLQLrmekDEMEEELGEKMEALQRELGQARAGAggsRQVEELRKLQGEAeRVRELEQQNLQLQKKTQQLSQD 643
Cdd:COG1196 180 KLEATEENLERL----EDILGELERQLEPLERQAEKAERYR---ELKEELKELEAEL-LLLKLRELEAELEELEAELEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 644 CAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVE 723
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 724 KQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVER 803
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 804 LNKELEQIGEDSKQALHQLQSQLEDyKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTAR 883
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEE-EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 884 LDKELLAQRLQGLEQEAE-----KKRRSQDDRTRQVKSLEEKVSRLEMELDEERNtvELLTDRINRSRDQVDQLRTELMQ 958
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEgvkaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALA--AALQNIVVEDDEVAAAAIEYLKA 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 959 ERSARQD-LECDKISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSI 1037
Cdd:COG1196 569 AKAGRATfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1038 QIdDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKDSWRKAARSAAES 1117
Cdd:COG1196 649 VT-LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
570
....*....|..
gi 229553905 1118 SLQQEGLSSDEE 1129
Cdd:COG1196 728 EQLEAEREELLE 739
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
527-1074 |
2.41e-24 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 110.41 E-value: 2.41e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 527 EAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELGEKMEALqRELGQARAGAGG 606
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 607 SRQVEELRKLQGEAERVR---ELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGEND 683
Cdd:COG1196 303 DIARLEERRRELEERLEEleeELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 684 EFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMG 763
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 764 QEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQL------EDYKEKSRREV 837
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvavligVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 838 ADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSL 917
Cdd:COG1196 543 ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 918 EEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLEGFQKPSASL 997
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 998 SQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERL 1074
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
465-1105 |
8.62e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 108.99 E-value: 8.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 465 GKQRVEEQLRQRERELTALKGALKEEVASRDqEVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQREL 544
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 545 EETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELgEKMEALQRELgqaragaggSRQVEELRK-LQGEAERV 623
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL-EELEAELEEL---------ESRLEELEEqLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 624 RELEQQNLQLQKKTQQLsqdcaEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEfrrrilgLEQQLKETRGLA 703
Cdd:TIGR02168 389 AQLELQIASLNNEIERL-----EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE-------LEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 704 EGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLaaakRALEARLEEAQRGL-------SRMGQEQQALSRALEEE 776
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSL----ERLQENLEGFSEGVkallknqSGLSGILGVLSELISVD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 777 GKQREALrrgkaELEEQKRLLDRTVERLNKELEQIGEDSKQALHQ-----LQSQLEDYKEKSRREVADAQRQAKEWASEA 851
Cdd:TIGR02168 533 EGYEAAI-----EAALGGRLQAVVVENLNAAKKAIAFLKQNELGRvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDL 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 852 EKSSGGLS--------------RLQDETQRLRQT------------------------------LQASQADLDTARLDKE 887
Cdd:TIGR02168 608 VKFDPKLRkalsyllggvlvvdDLDNALELAKKLrpgyrivtldgdlvrpggvitggsaktnssILERRREIEELEEKIE 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 888 LLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLE 967
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 968 CDKISLERQNKDLKGRLASLEG-FQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDD-ERQH 1045
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAqIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDlEEQI 847
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 229553905 1046 VNDQKDQLSLK--VKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKD 1105
Cdd:TIGR02168 848 EELSEDIESLAaeIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
348-1110 |
2.16e-23 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 107.85 E-value: 2.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 348 ELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLE--------RQKGETRQSGTELQNLRLLLDQA 419
Cdd:TIGR02169 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEelnkkikdLGEEEQLRVKEKIGELEAEIASL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 420 GRVRSELETQVMELQDQLKQGPV---------PAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEE 490
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAeidkllaeiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 491 VASRDQEVE---HVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRA 567
Cdd:TIGR02169 387 LKDYREKLEklkREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 568 AKQELLQLRMEKDEMEEELGEKMEALQRELGQARA----GAGGSRQVEELRK-LQGEAERVRELEQQNLQLQK------- 635
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAseerVRGGRAVEEVLKAsIQGVHGTVAQLGSVGERYATaievaag 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 636 --------KTQQLSQDCAEATKARGA---------RMAAEAEAALLVQR-----------------RTAVETTLQETQ-G 680
Cdd:TIGR02169 547 nrlnnvvvEDDAVAKEAIELLKRRKAgratflplnKMRDERRDLSILSEdgvigfavdlvefdpkyEPAFKYVFGDTLvV 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 681 ENDEFRRRILG------LEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEE 754
Cdd:TIGR02169 627 EDIEAARRLMGkyrmvtLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 755 AQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIG---EDSKQALHQLQSQLEDYKE 831
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEariEELEEDLHKLEEALNDLEA 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 832 KSRREvadaqrqakewasEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRT 911
Cdd:TIGR02169 787 RLSHS-------------RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 912 RQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLEGfq 991
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE-- 931
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 992 kpsaSLSQLESQNRELQERLQAEDREKTVlQSTNRKLERRVKELsiqidderQHVNdqkdqlslkvkalKRQVDEAEEEI 1071
Cdd:TIGR02169 932 ----ELSEIEDPKGEDEEIPEEELSLEDV-QAELQRVEEEIRAL--------EPVN-------------MLAIQEYEEVL 985
|
810 820 830
....*....|....*....|....*....|....*....
gi 229553905 1072 ERLDGLRKKAQReLEEQHEANEQLQARIRALEKDSWRKA 1110
Cdd:TIGR02169 986 KRLDELKEKRAK-LEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
376-1013 |
3.45e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.40 E-value: 3.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 376 ELEQQLE------EKAEECLRLQELLERQKGETRqsgteLQNLRLLLDQAGRVRSELETQVMELQDQLKQgpvpakeglm 449
Cdd:COG1196 197 ELERQLEplerqaEKAERYRELKEELKELEAELL-----LLKLRELEAELEELEAELEELEAELEELEAE---------- 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 450 kdlletrelleevlegKQRVEEQLRQRERELTALKGALkeevasrdqevehvrqqcqrdtEQLRKSIQDASQDQAALEAE 529
Cdd:COG1196 262 ----------------LAELEAELEELRLELEELELEL----------------------EEAQAEEYELLAELARLEQD 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 530 RQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELGEKMEALQRELGQARAGAggSRQ 609
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE--EEL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 610 VEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARmaaEAEAALLVQRRTAVETTLQETQGENDEFRRRI 689
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL---EEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 690 LGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAE-EGSLAAAKRALEARLEEAQRGLSRMGQEQQA 768
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFlEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 769 LSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQLEDYKeksRREVADAQRQAKEWA 848
Cdd:COG1196 539 ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA---VDLVASDLREADARY 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 849 SEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMEL 928
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 929 DEERNTVELLTDRINRSRDQvdQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQ 1008
Cdd:COG1196 696 EEALLAEEEEERELAEAEEE--RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*
gi 229553905 1009 ERLQA 1013
Cdd:COG1196 774 REIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
348-905 |
5.47e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 99.63 E-value: 5.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 348 ELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELE 427
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 428 TQVMELQDQLKQgpvpakeglmkdlletrelleeVLEGKQRVEEQLRQRERELTALKGALkEEVASRDQEVEHVRQQCQR 507
Cdd:COG1196 323 EELAELEEELEE----------------------LEEELEELEEELEEAEEELEEAEAEL-AEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 508 DTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEEtghwQTMFQKNKEELRAAKQELLQLRMEKDEMEEELG 587
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE----LEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 588 EKMEALQRELGQARAGAggSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEA---EAALL 664
Cdd:COG1196 456 EEEEALLELLAELLEEA--ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvavLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 665 VQRRTAVETTLQE-TQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAA 743
Cdd:COG1196 534 AAYEAALEAALAAaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 744 AKRALEARLEEAQRGLSRMGQEqQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQ 823
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAA-LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 824 SQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKK 903
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
..
gi 229553905 904 RR 905
Cdd:COG1196 773 ER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
348-1104 |
9.00e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 98.98 E-value: 9.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 348 ELAQKVEELQR-----KLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRV 422
Cdd:TIGR02168 217 ELKAELRELELallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 423 RSELETQVMELQDQLKQgPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRdQEVEHVR 502
Cdd:TIGR02168 297 ISRLEQQKQILRERLAN-LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL-EELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 503 QQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEET-GHWQTMFQKNKEELRAAKQELLQLRMEKDE 581
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIeELLKKLEEAELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 582 MEEELGEKMEALQRELGQARagaggSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEA 661
Cdd:TIGR02168 455 ELERLEEALEELREELEEAE-----QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 662 ALLVQRRTAVETTLQETQG----ENDEFRRRILG-LEQQLKETRGLAEGGEAAEARLR-DKLQRLEVEKQRLEEALSEAQ 735
Cdd:TIGR02168 530 SVDEGYEAAIEAALGGRLQavvvENLNAAKKAIAfLKQNELGRVTFLPLDSIKGTEIQgNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 736 AEegslAAAKRALEARL---------EEAQRGLSRMGQEQQALSRALE--------------------EEGKQREALRRG 786
Cdd:TIGR02168 610 FD----PKLRKALSYLLggvlvvddlDNALELAKKLRPGYRIVTLDGDlvrpggvitggsaktnssilERRREIEELEEK 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 787 KAELEEQKRLLDRTVERLNKELEQIgedsKQALHQLQSQLEDYKEKSRREVADAQRQAKE---WASEAEKSSGGLSRLQD 863
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEEL----EEELEQLRKELEELSRQISALRKDLARLEAEveqLEERIAQLSKELTELEA 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 864 ETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRIN 943
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 944 RSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLE-GFQKPSASLSQLESQNRELQERLQAEDREKTVLQ 1022
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEeALALLRSELEELSEELRELESKRSELRRELEELR 921
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1023 STNRKLERRVKELSIQID-----------DERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEA 1091
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDnlqerlseeysLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER 1001
|
810
....*....|...
gi 229553905 1092 NEQLQARIRALEK 1104
Cdd:TIGR02168 1002 YDFLTAQKEDLTE 1014
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
348-827 |
1.98e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.70 E-value: 1.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 348 ELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELE 427
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 428 TQVMELQDQLKQgpvpAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQCQR 507
Cdd:COG1196 372 AELAEAEEELEE----LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 508 DTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELG 587
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 588 EKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQN--------LQLQKKTQQLSQDCAEATKARGARMAAEA 659
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratflpLDKIRARAALAAALARGAIGAAVDLVASD 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 660 EAALLVQRRTAVETTLQETQGE--NDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAE 737
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAarLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 738 EGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQ 817
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
490
....*....|
gi 229553905 818 ALHQLQSQLE 827
Cdd:COG1196 768 ELERLEREIE 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
343-1103 |
1.01e-19 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 95.91 E-value: 1.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 343 LAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQ---LEEKAEECLRLQELLERqKGETRQSgTELQNLRLLLDQA 419
Cdd:TIGR02169 162 IAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQlerLRREREKAERYQALLKE-KREYEGY-ELLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 420 GRVRSELETQVMELQDQLKQGPVPAKEglmkdlletrelleevlegKQRVEEQLRQRERELTALKGALKEEVASRDQEVE 499
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKR-------------------LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 500 HVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEK 579
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 580 DEMEEELG---EKMEALQRELGQARAGAggSRQVEELRKLQGEAERVR---------------ELEQQNLQLQKKTQQLS 641
Cdd:TIGR02169 381 AETRDELKdyrEKLEKLKREINELKREL--DRLQEELQRLSEELADLNaaiagieakineleeEKEDKALEIKKQEWKLE 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 642 QDCAEATKARgARMAAEAEAALLVQRR--------TAVETTLQETQGENDEFRRRILGLEQQLKETRGL-AEGGE----- 707
Cdd:TIGR02169 459 QLAADLSKYE-QELYDLKEEYDRVEKElsklqrelAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTvAQLGSvgery 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 708 ------AAEARL-------------------RDKLQR---LEVEKQRLEEALSEAQAEEG-------------------- 739
Cdd:TIGR02169 538 ataievAAGNRLnnvvveddavakeaiellkRRKAGRatfLPLNKMRDERRDLSILSEDGvigfavdlvefdpkyepafk 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 740 ----------SLAAAKR--------ALEARLEE---AQRGLSRMGQEQQALSRALEEEgkqreaLRRGKAELEEQKRLLd 798
Cdd:TIGR02169 618 yvfgdtlvveDIEAARRlmgkyrmvTLEGELFEksgAMTGGSRAPRGGILFSRSEPAE------LQRLRERLEGLKREL- 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 799 rtvERLNKELEQIgedsKQALHQLQSQLEDykekSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQAD 878
Cdd:TIGR02169 691 ---SSLQSELRRI----ENRLDELSQELSD----ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 879 LDtaRLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQ 958
Cdd:TIGR02169 760 LK--ELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 959 ERSARQDLECDKISLERQNKDLKGRLASLEgfqkpsASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQ 1038
Cdd:TIGR02169 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELE------EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQ 911
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 229553905 1039 IDDERQHVNDQKDQLSLK---VKALKRQVDEAEEEIERLDGLRKKAQREleeqheanEQLQARIRALE 1103
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALeeeLSEIEDPKGEDEEIPEEELSLEDVQAEL--------QRVEEEIRALE 971
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
344-1092 |
7.01e-19 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 93.28 E-value: 7.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 344 AGQGELAQKVEELQRKldEEVKK----RQVLEPSRLELEQQLEE--------KAEECLRLQELLE-----RQKGETRQSG 406
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKA--EELRKaedaRKAEAARKAEEERKAEEarkaedakKAEAVKKAEEAKKdaeeaKKAEEERNNE 1252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 407 TELQNLRLLLDQAGRVRSELETQVMELQDQLKQGPVPAK-EGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKG 485
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKaDEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 486 ALKEEVASRDQEVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRglQRELEETSEETghwqtmfqKNKEEL 565
Cdd:PTZ00121 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK--KAEEKKKADEA--------KKKAEE 1402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 566 RAAKQELLQLRMEKDEMEEELGEKMEAlQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQnLQLQKKTQQLSQDCA 645
Cdd:PTZ00121 1403 DKKKADELKKAAAAKKKADEAKKKAEE-KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK-AEEAKKADEAKKKAE 1480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 646 EATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLeQQLKETRGLAEGGEAAEARLRDKLQRLEV--- 722
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA-KKAEEAKKADEAKKAEEKKKADELKKAEElkk 1559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 723 --EKQRLEEALSEAQAEEGSLAAA---KRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLL 797
Cdd:PTZ00121 1560 aeEKKKAEEAKKAEEDKNMALRKAeeaKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 798 DRTVERLNK--ELEQIGEDSKQALHQLQSQLEDYKEKS---RREVADAQRQAKEWASEAEKSSgglsrlqdETQRLRQTL 872
Cdd:PTZ00121 1640 KKEAEEKKKaeELKKAEEENKIKAAEEAKKAEEDKKKAeeaKKAEEDEKKAAEALKKEAEEAK--------KAEELKKKE 1711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 873 QASQADLDTARLDKELLAQRLQGLEQEAEKKRRsqddrtrqvKSLEEKVSrlemelDEERNTVELLTDRINRSRDQVDQL 952
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK---------KAEEAKKD------EEEKKKIAHLKKEEEKKAEEIRKE 1776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 953 RTELMQERSARQDlECDKISLERQNKDLKGRLASL-EGFQKPSASLSqlESQNRELQERLQAEDREKTVLQSTNRKLERR 1031
Cdd:PTZ00121 1777 KEAVIEEELDEED-EKRRMEVDKKIKDIFDNFANIiEGGKEGNLVIN--DSKEMEDSAIKEVADSKNMQLEEADAFEKHK 1853
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229553905 1032 VKELSIQIDDERQHVNDQKDqlslkvkalKRQVDEAEEEIERLDGLRKKAQRELEEQHEAN 1092
Cdd:PTZ00121 1854 FNKNNENGEDGNKEADFNKE---------KDLKEDDEEEIEEADEIEKIDKDDIEREIPNN 1905
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
347-1035 |
1.17e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.43 E-value: 1.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 347 GELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGetrqsgtELQNLRLLLDQAGRVRSEL 426
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN-------EIERLEARLERLEDRRERL 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 427 ETQVMELQDQLkqgpvpaKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQCq 506
Cdd:TIGR02168 420 QQEIEELLKKL-------EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL- 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 507 RDTEQLRKSIQDASQDQAALEAERQKMSALVrGLQRELEETseetghwqtmfqknKEELRAAKQELLQLRMEKDEME--E 584
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGIL-GVLSELISV--------------DEGYEAAIEAALGGRLQAVVVEnlN 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 585 ELGEKMEALQR---------ELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGArm 655
Cdd:TIGR02168 557 AAKKAIAFLKQnelgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNA-- 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 656 aaeaeaaLLVQRRTAVETTLQETQGE-----------NDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEK 724
Cdd:TIGR02168 635 -------LELAKKLRPGYRIVTLDGDlvrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 725 QRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERL 804
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 805 NKELEQIGED---SKQALHQLQSQLEDYKEKS---RREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQAD 878
Cdd:TIGR02168 788 EAQIEQLKEElkaLREALDELRAELTLLNEEAanlRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 879 LDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQ 958
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 959 ERSARQD--------LECDKISLERQNKDLKGR--------LASLEGFQKPSASLSQLESQNRELQErlqaedrEKTVLQ 1022
Cdd:TIGR02168 948 EYSLTLEeaealenkIEDDEEEARRRLKRLENKikelgpvnLAAIEEYEELKERYDFLTAQKEDLTE-------AKETLE 1020
|
730
....*....|...
gi 229553905 1023 STNRKLERRVKEL 1035
Cdd:TIGR02168 1021 EAIEEIDREARER 1033
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
444-1129 |
7.42e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 89.82 E-value: 7.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 444 AKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTAL----KGALKEEVASRDQE---VEHVRQQCQ-RDTEQLRKS 515
Cdd:PTZ00121 1117 AEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIarkaEDARKAEEARKAEDakkAEAARKAEEvRKAEELRKA 1196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 516 iQDASQDQAALEAERQKMSALVRglQRELEETSEETghwqtmfqKNKEELRAAKQELLQLRMEKDEMEEELGEKMEALQR 595
Cdd:PTZ00121 1197 -EDARKAEAARKAEEERKAEEAR--KAEDAKKAEAV--------KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 596 ELGQARAGAGGSRQVEELRKlqgeAERVRELEQ-QNLQLQKKTQQLSQDCAEATKArgarmaaeaeaallvqrrtavett 674
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADELKK----AEEKKKADEaKKAEEKKKADEAKKKAEEAKKA------------------------ 1317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 675 lQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEegSLAAAKRALEAR-LE 753
Cdd:PTZ00121 1318 -DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK--ADAAKKKAEEKKkAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 754 EAQRGLSRMGQEQQALSRALEEEGKQREAlrRGKAELEEQKRLLDRTVERLNK--ELEQIGEDSKQALHQLQSQLEDYKE 831
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEA--KKKAEEKKKADEAKKKAEEAKKadEAKKKAEEAKKAEEAKKKAEEAKKA 1472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 832 KSRREVADAQRQAKEW---ASEAEKSSGGLSRLQDETQRLRQTLQASQA-DLDTARLDKEllAQRLQGLEQEAEKKRRSQ 907
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAkkkAEEAKKKADEAKKAAEAKKKADEAKKAEEAkKADEAKKAEE--AKKADEAKKAEEKKKADE 1550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 908 DDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRsrdQVDQLRTE-LMQERSARQDLECDKISLERQNKDLKGRLAS 986
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK---KAEEARIEeVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 987 LEGFQKPSASLSQLESQNRELQERLQAEDREKTVlqstnrklerRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDE 1066
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI----------KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 229553905 1067 AEEEiERLDGLRKKAQRELEEQHEANEQLQARIRALEkdswrKAARSAAESSLQQEGLSSDEE 1129
Cdd:PTZ00121 1698 AEEA-KKAEELKKKEAEEKKKAEELKKAEEENKIKAE-----EAKKEAEEDKKKAEEAKKDEE 1754
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
558-904 |
1.73e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 1.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 558 FQKNKEE----LRAAKQELLQLrmekDEMEEELGEKMEALQRelgQARAGAGGSRQVEELRKLQGE--AERVRELEQQNL 631
Cdd:TIGR02168 170 YKERRKEterkLERTRENLDRL----EDILNELERQLKSLER---QAEKAERYKELKAELRELELAllVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 632 QLQKKTQQLSQDCAEATkaRGARMAAEAEAALLVQRRtAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEA 711
Cdd:TIGR02168 243 ELQEELKEAEEELEELT--AELQELEEKLEELRLEVS-ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 712 RLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQrglsrmgQEQQALSRALEEEGKQREALRRGKAELE 791
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE-------AELEELESRLEELEEQLETLRSKVAQLE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 792 EQKRLLDRTVERLNKELEQIgEDSKQALHQLQSQLEdyKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQT 871
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERL-EDRRERLQQEIEELL--KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
330 340 350
....*....|....*....|....*....|...
gi 229553905 872 LQASQADLDTARLDKELLAQRLQGLEQEAEKKR 904
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
309-1109 |
2.34e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 88.27 E-value: 2.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 309 REGSSESDASVRRKVSlvleQMQPLVMTTGSAKVLAGQGELAQKVEELQRKLDEEVKKRqvlEPSRLELEQQLEE---KA 385
Cdd:PTZ00121 1052 IDGNHEGKAEAKAHVG----QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKT---ETGKAEEARKAEEakkKA 1124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 386 EECLRLQELleRQKGETRQsgtelqnlrllLDQAGRVRSELETQVMELQDQLKQGPVPAKEGLMKDLLETRELLEEVLEG 465
Cdd:PTZ00121 1125 EDARKAEEA--RKAEDARK-----------AEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAE 1191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 466 KQRVEEQLRQREReltalkgALKEEVASRDQEVEhvRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELE 545
Cdd:PTZ00121 1192 ELRKAEDARKAEA-------ARKAEEERKAEEAR--KAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARM 1262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 546 ETSEETGHWQTMFQKNK-EELRAAkqellqlrmEKDEMEEELGEKMEAlqrelgqaragaggsRQVEELRKLQGEAERVR 624
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKaDELKKA---------EEKKKADEAKKAEEK---------------KKADEAKKKAEEAKKAD 1318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 625 ELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAALLVQrrtAVETTLQETQGENDEFRRRILGLEQQLKETRGLAE 704
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE---AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 705 GGEAAEARLR--DKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREA 782
Cdd:PTZ00121 1396 AKKKAEEDKKkaDELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 783 lrrgKAELEEQKRLldrtverlnKELEQIGEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQ 862
Cdd:PTZ00121 1476 ----KKKAEEAKKA---------DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 863 DETQR---LRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEME----LDEERNTV 935
Cdd:PTZ00121 1543 EEKKKadeLKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEeakkAEEAKIKA 1622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 936 ELLTdRINRSRDQVDQLRTELMQERSARQDLEcdkiSLERQNKDLKGRLASLEGFQKPSA-SLSQLESQNRELQERLQAE 1014
Cdd:PTZ00121 1623 EELK-KAEEEKKKVEQLKKKEAEEKKKAEELK----KAEEENKIKAAEEAKKAEEDKKKAeEAKKAEEDEKKAAEALKKE 1697
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1015 DREKTVLQSTNRKLERRVKelsiqiddERQHVNDQKDQLSLKVKALKRQVDEAE---EEIERLDGLRKKAQRELEEQHEA 1091
Cdd:PTZ00121 1698 AEEAKKAEELKKKEAEEKK--------KAEELKKAEEENKIKAEEAKKEAEEDKkkaEEAKKDEEEKKKIAHLKKEEEKK 1769
|
810
....*....|....*...
gi 229553905 1092 NEQLQARIRALEKDSWRK 1109
Cdd:PTZ00121 1770 AEEIRKEKEAVIEEELDE 1787
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
340-1128 |
1.30e-16 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 85.61 E-value: 1.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 340 AKVLAGQGELAQKVEELQRKLDEEVKKRQVLEPSR-------LELEQQLEEkaEECLRLQELLERQKGETRQSGTElQNL 412
Cdd:pfam01576 64 ARLAARKQELEEILHELESRLEEEEERSQQLQNEKkkmqqhiQDLEEQLDE--EEAARQKLQLEKVTTEAKIKKLE-EDI 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 413 RLLLDQAGRV---RSELETQVMELQDQLKQGPVPAKEglMKDLLETRELLEEVLEGKQRVEEQLRQR----ERELTALKG 485
Cdd:pfam01576 141 LLLEDQNSKLskeRKLLEERISEFTSNLAEEEEKAKS--LSKLKNKHEAMISDLEERLKKEEKGRQElekaKRKLEGEST 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 486 ALKEEVASRDQEVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQKmsalVRGLQRELEETSEETGHWQTMFQKNKEEL 565
Cdd:pfam01576 219 DLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKK----IRELEAQISELQEDLESERAARNKAEKQR 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 566 RAAKQELLQLrmeKDEMEEELGEKmeALQRELGQARagaggSRQVEELRKLQGEAERVRELEQQNLQlQKKTQQLSQDCA 645
Cdd:pfam01576 295 RDLGEELEAL---KTELEDTLDTT--AAQQELRSKR-----EQEVTELKKALEEETRSHEAQLQEMR-QKHTQALEELTE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 646 EATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQ 725
Cdd:pfam01576 364 QLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 726 RLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLN 805
Cdd:pfam01576 444 SVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQ 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 806 KELEQIGEDSKQALHQLQsQLEDYKEKSRREVADAQRQAKEWASEAEKssgglsrLQDETQRLRQTLQASQADLDTARLD 885
Cdd:pfam01576 524 AQLSDMKKKLEEDAGTLE-ALEEGKKRLQRELEALTQQLEEKAAAYDK-------LEKTKNRLQQELDDLLVDLDHQRQL 595
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 886 KELLAQRL----QGLEQEAEKKRRSQDDRTRQVKSLEEKVSR---LEMELDEERNTVELLtDRINRsrdqvdQLRTELMQ 958
Cdd:pfam01576 596 VSNLEKKQkkfdQMLAEEKAISARYAEERDRAEAEAREKETRalsLARALEEALEAKEEL-ERTNK------QLRAEMED 668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 959 ERSARQD-------LECDKISLERQNKDLKGRLASLE--------GFQKPSASLSQLESQ-NRELQERLQAEDREKtvlq 1022
Cdd:pfam01576 669 LVSSKDDvgknvheLERSKRALEQQVEEMKTQLEELEdelqatedAKLRLEVNMQALKAQfERDLQARDEQGEEKR---- 744
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1023 stnRKLERRVKELSIQIDDERQH---VNDQKDQLSLKVKALKRQV-------DEAEEEIERLDGLRKKAQRELEEQHEAN 1092
Cdd:pfam01576 745 ---RQLVKQVRELEAELEDERKQraqAVAAKKKLELDLKELEAQIdaankgrEEAVKQLKKLQAQMKDLQRELEEARASR 821
|
810 820 830
....*....|....*....|....*....|....*.
gi 229553905 1093 EQlqarIRALEKDSWRKAARSAAESSLQQEGLSSDE 1128
Cdd:pfam01576 822 DE----ILAQSKESEKKLKNLEAELLQLQEDLAASE 853
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
666-1103 |
1.04e-15 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 82.40 E-value: 1.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 666 QRRTAVET--TLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAA 743
Cdd:PRK02224 228 QREQARETrdEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 744 AKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGE---DSKQALH 820
Cdd:PRK02224 308 DAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREaveDRREEIE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 821 QLQSQLEDykekSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARldkELLA---------- 890
Cdd:PRK02224 388 ELEEEIEE----LRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAE---ALLEagkcpecgqp 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 891 --------------QRLQGLEQEAEKKRRSQDDRT-------------RQVKSLEEKVSRLEMELDEERNTVELLTDRIN 943
Cdd:PRK02224 461 vegsphvetieedrERVEELEAELEDLEEEVEEVEerleraedlveaeDRIERLEERREDLEELIAERRETIEEKRERAE 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 944 RSRDQVDQLRTELMQERSARQDLECDK-------ISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERLQAEDR 1016
Cdd:PRK02224 541 ELRERAAELEAEAEEKREAAAEAEEEAeeareevAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAE 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1017 EKTVLQSTNRKLERRVKELSIQIDDER---------------QHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKa 1081
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEFDEARieearedkeraeeylEQVEEKLDELREERDDLQAEIGAVENELEELEELRER- 699
|
490 500
....*....|....*....|..
gi 229553905 1082 QRELEEQHEANEQLQARIRALE 1103
Cdd:PRK02224 700 REALENRVEALEALYDEAEELE 721
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
354-950 |
1.36e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 75.72 E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 354 EELQRKLDEEVKKRQVLEPSRlELEQQLEEKAEECLRLQELLERQKGETRQsgTELQNLRLLLDQAGRVRSELETQVMEL 433
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIR-ELAERYAAARERLAELEYLRAALRLWFAQ--RRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 434 QDQLKQgpvpakeglmkdlletrelleevlegkqrVEEQLRQRERELTALKG----ALKEEVASRDQEVEHVRQQCQRDT 509
Cdd:COG4913 315 EARLDA-----------------------------LREELDELEAQIRGNGGdrleQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 510 EQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELGEK 589
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 590 MEALQRELGQARAG---AGGSRQVEEL-RKLQGEAERV-------------------RELEQQNLQLQKKTQQLSQDCAE 646
Cdd:COG4913 446 RDALAEALGLDEAElpfVGELIEVRPEeERWRGAIERVlggfaltllvppehyaaalRWVNRLHLRGRLVYERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 647 ATKARG------ARMAAEAEA-----ALLVQRRTAVETTlqETQGENDEFRRRILgLEQQLKETRGLAE-GGEAAEARL- 713
Cdd:COG4913 526 PERPRLdpdslaGKLDFKPHPfrawlEAELGRRFDYVCV--DSPEELRRHPRAIT-RAGQVKGNGTRHEkDDRRRIRSRy 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 714 ------RDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLE----------------EAQRGLSRMGQEQQALSR 771
Cdd:COG4913 603 vlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREalqrlaeyswdeidvaSAEREIAELEAELERLDA 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 772 A---LEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWA 848
Cdd:COG4913 683 SsddLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 849 SEAEKS---SGGLSRLQDETQRLRQTLQASQAD------LDTARLDKELLA-----QRLQGLEQE--AEKKRRSQDDRTR 912
Cdd:COG4913 763 VERELRenlEERIDALRARLNRAEEELERAMRAfnrewpAETADLDADLESlpeylALLDRLEEDglPEYEERFKELLNE 842
|
650 660 670
....*....|....*....|....*....|....*...
gi 229553905 913 QVkslEEKVSRLEMELDEERNTVELLTDRINRSRDQVD 950
Cdd:COG4913 843 NS---IEFVADLLSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
488-1129 |
6.25e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.64 E-value: 6.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 488 KEEVASRDQEVEHvRQQCQRDTEQLRKSiQDASQDQAALEAERQKMSALVRGLQ--RELEETSEETGHWQTMFQKNKEEL 565
Cdd:PTZ00121 1110 KAEEARKAEEAKK-KAEDARKAEEARKA-EDARKAEEARKAEDAKRVEIARKAEdaRKAEEARKAEDAKKAEAARKAEEV 1187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 566 RAAKQellqLRMEKDEMEEELGEKMEAlQRELGQARAgAGGSRQVEELRKlqgeAERVRELEQQNLQLQKktQQLSQDCA 645
Cdd:PTZ00121 1188 RKAEE----LRKAEDARKAEAARKAEE-ERKAEEARK-AEDAKKAEAVKK----AEEAKKDAEEAKKAEE--ERNNEEIR 1255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 646 EATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRilgleqqlKETRGLAEGGEAAEARlrdklQRLEVEKQ 725
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKA--------EEKKKADEAKKKAEEA-----KKADEAKK 1322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 726 RLEEALSEAQAEEGSLAAAKRALEARLEEAQRG---LSRMGQEQQALSRALEEEGKQREALRRgKAELEEQKRLLDRTVE 802
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAadeAEAAEEKAEAAEKKKEEAKKKADAAKK-KAEEKKKADEAKKKAE 1401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 803 RLNKELEQI--GEDSKQALHQLQSQLEDYKE----KSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQ 876
Cdd:PTZ00121 1402 EDKKKADELkkAAAAKKKADEAKKKAEEKKKadeaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 877 A-DLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEmeldEERNTVELLTDRINRSRDQVDqlRTE 955
Cdd:PTZ00121 1482 AkKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE----EAKKADEAKKAEEKKKADELK--KAE 1555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 956 LMQERSARQDLECDKISLERQNKDLKgrlaslegfqkPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKEL 1035
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALR-----------KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1036 SIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRE--------LEEQHEANEQLQARIRALEKDSW 1107
Cdd:PTZ00121 1625 LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkkkaeeakKAEEDEKKAAEALKKEAEEAKKA 1704
|
650 660
....*....|....*....|..
gi 229553905 1108 RKAARSAAESSLQQEGLSSDEE 1129
Cdd:PTZ00121 1705 EELKKKEAEEKKKAEELKKAEE 1726
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
745-1068 |
8.45e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 8.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 745 KRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREA---LRRGKAELEE-QKRLLDRTVERLNKELEQIGEDSKQA-- 818
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELERQLKSLERQAEKaerYKELKAELRElELALLVLRLEELREELEELQEELKEAee 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 819 -LHQLQSQLEDYKEK---SRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQ 894
Cdd:TIGR02168 254 eLEELTAELQELEEKleeLRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 895 GLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLE 974
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 975 RQNKDLKGRLASLEGfqkpsaslSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQID---DERQHVNDQKD 1051
Cdd:TIGR02168 414 DRRERLQQEIEELLK--------KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEeaeQALDAAERELA 485
|
330
....*....|....*..
gi 229553905 1052 QLSLKVKALKRQVDEAE 1068
Cdd:TIGR02168 486 QLQARLDSLERLQENLE 502
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
349-1042 |
1.13e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.84 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 349 LAQKVEELQRKLDEEVkkrQVLEPSRLELEQQLEE-KAEECLRLQELLERQKGETRQSGTELQ-NLRLLLDQAGRVRSE- 425
Cdd:pfam15921 218 LGSAISKILRELDTEI---SYLKGRIFPVEDQLEAlKSESQNKIELLLQQHQDRIEQLISEHEvEITGLTEKASSARSQa 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 426 --LETQVMELQDQLKQGPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQevehVRQ 503
Cdd:pfam15921 295 nsIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQ----FSQ 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 504 QCQRDTEQLRKSIQDASQDQAALEAERQKMSAL----------VRGLQRELEETSEETGHWQTMFQKNKEELraakQELL 573
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSEC----QGQM 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 574 QLRMEKDEMEEELGEKMEALQRELGQARAGAggSRQVEEL--RKLQGEAERvRELEQQNLQLQKKTQQLSQDCAEATKAR 651
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVSSLTAQLESTKEML--RKVVEELtaKKMTLESSE-RTVSDLTASLQEKERAIEATNAEITKLR 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 652 garmAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILG-------LEQQLKE-TRGLAEGGEAAEARLRDKLQ-RLEV 722
Cdd:pfam15921 524 ----SRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEkdkvieiLRQQIENmTQLVGQHGRTAGAMQVEKAQlEKEI 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 723 EKQRLEeaLSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREAL-------RRGKAELEEQKR 795
Cdd:pfam15921 600 NDRRLE--LQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLlnevktsRNELNSLSEDYE 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 796 LLDRTVERLNKELEQIGEDSKQALHQLQSQLEDYKEKSRR-EVAD--AQRQAKEWASEAEKSSGGLSRLQDETQRLRQTL 872
Cdd:pfam15921 678 VLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmEGSDghAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAM 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 873 QASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQL 952
Cdd:pfam15921 758 TNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 953 RtelMQERSARQDLECDKISlerQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERlqaEDREKTVLQSTNRKLERRV 1032
Cdd:pfam15921 838 K---LQHTLDVKELQGPGYT---SNSSMKPRLLQPASFTRTHSNVPSSQSTASFLSHH---SRKTNALKEDPTRDLKQLL 908
|
730
....*....|
gi 229553905 1033 KELSIQIDDE 1042
Cdd:pfam15921 909 QELRSVINEE 918
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
560-1105 |
1.33e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 1.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 560 KNKEELRAAKQELLQlRMEKDEMEEELGEKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQ 639
Cdd:TIGR02169 184 ENIERLDLIIDEKRQ-QLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 640 LSQDCAEATKARGARMAAEAEAALLVQRRtaVETTLQETQGENDEFRRRILGLEQQLKETrglaeggEAAEARLRDKLQR 719
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLR--VKEKIGELEAEIASLERSIAEKERELEDA-------EERLAKLEAEIDK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 720 LEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQrglSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDR 799
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR---AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 800 TVERLnKELEQIGEDSKQALHQL---QSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQ 876
Cdd:TIGR02169 411 LQEEL-QRLSEELADLNAAIAGIeakINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 877 ADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSL----EEKVSRLEMELDEERNTV------------ELLTD 940
Cdd:TIGR02169 490 RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvgERYATAIEVAAGNRLNNVvveddavakeaiELLKR 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 941 R---------INRSRDQVDQLRTELMQersARQDLECDKISLERQ--------------------NKDLKG--RLASLEG 989
Cdd:TIGR02169 570 RkagratflpLNKMRDERRDLSILSED---GVIGFAVDLVEFDPKyepafkyvfgdtlvvedieaARRLMGkyRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 990 -FQKPSASLS--------------QLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDD----------ERQ 1044
Cdd:TIGR02169 647 eLFEKSGAMTggsraprggilfsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDasrkigeiekEIE 726
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229553905 1045 HVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKD 1105
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
341-931 |
1.70e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 1.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 341 KVLAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLL---LD 417
Cdd:PRK03918 183 KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLeekIR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 418 QAGRVRSELETQVMELQDQLKQgpVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALK--EEVASRD 495
Cdd:PRK03918 263 ELEERIEELKKEIEELEEKVKE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKelEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 496 QEVEHVRQQCQRDTEQLRKSIQdasqdqaALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRaakQELLQL 575
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHE-------LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIE---EEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 576 RMEKDEMEEELGEKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARM 655
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 656 AaeaeaallvQRRTAVETTLQEtQGENDEFRRRILGLEQQLKETRGLAEggeaaearLRDKLQRLEVEKQRLEEALSEAQ 735
Cdd:PRK03918 491 K---------ESELIKLKELAE-QLKELEEKLKKYNLEELEKKAEEYEK--------LKEKLIKLKGEIKSLKKELEKLE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 736 AEEGSLAA---AKRALEARLEEAQRGLSRMG----QEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKEL 808
Cdd:PRK03918 553 ELKKKLAElekKLDELEEELAELLKELEELGfesvEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 809 EQIgEDSKQALHQLQSQLED----YKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARL 884
Cdd:PRK03918 633 EEL-AETEKRLEELRKELEElekkYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 229553905 885 DKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSleeKVSRLEMELDEE 931
Cdd:PRK03918 712 ELEKLEKALERVEELREKVKKYKALLKERALS---KVGEIASEIFEE 755
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-850 |
2.63e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.25 E-value: 2.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 340 AKVLAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEqQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQA 419
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 420 GRVRSELETQVMELQDQLKQgpvpaKEGLMKDLLETRELLEEVLEGKQRVEEQLRQREReltaLKGALKEEVASRDQEVE 499
Cdd:PRK03918 327 EERIKELEEKEERLEELKKK-----LKELEKRLEELEERHELYEEAKAKKEELERLKKR----LTGLTPEKLEKELEELE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 500 HVRQQCQRDTEQLRKSI-----QDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQ 574
Cdd:PRK03918 398 KAKEEIEEEISKITARIgelkkEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 575 LRMEKDEMEEELGEkmealQRELGQARAGAGGSRQVEE------LRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEAT 648
Cdd:PRK03918 478 LRKELRELEKVLKK-----ESELIKLKELAEQLKELEEklkkynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 649 KARGARMAAEAEAALLVQRRTAVETTLQETQGEN-DEFRRRILGLEQQLKETRGLAEggeaAEARLRDKLQRLEVEKQRL 727
Cdd:PRK03918 553 ELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKELEPFYNEYLELKD----AEKELEREEKELKKLEEEL 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 728 EEALSEAQAEEGSLaaakRALEARLEEAQRGLSRmgQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKE 807
Cdd:PRK03918 629 DKAFEELAETEKRL----EELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 229553905 808 LEQIGEDSK--QALHQLQSQLEDYKEKSRREVADAQRQA----KEWASE 850
Cdd:PRK03918 703 LEEREKAKKelEKLEKALERVEELREKVKKYKALLKERAlskvGEIASE 751
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
340-946 |
4.99e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.94 E-value: 4.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 340 AKVLAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQ--QLEEKAEECLRLQELleRQKGETRQSGTELQNLRLLLD 417
Cdd:PTZ00121 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKadEAKKKAEEKKKADEA--KKKAEEAKKADEAKKKAEEAK 1457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 418 QAGRVRSELETQvmELQDQLKQGPVPAKEG-----LMKDLLETRELLEEVLEGKQRVEEQLRQRE-RELTALKGALKEEV 491
Cdd:PTZ00121 1458 KAEEAKKKAEEA--KKADEAKKKAEEAKKAdeakkKAEEAKKKADEAKKAAEAKKKADEAKKAEEaKKADEAKKAEEAKK 1535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 492 ASRDQEVEHVRQQCQ-RDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQ 570
Cdd:PTZ00121 1536 ADEAKKAEEKKKADElKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 571 ELLQLRMEKDEMEEELGEKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQqnlqlQKKTQQLSQDCAEATKA 650
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED-----KKKAEEAKKAEEDEKKA 1690
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 651 rgarmaaeaeaallvqrrtavettlQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEarlrdklqrlEVEKQRLEEA 730
Cdd:PTZ00121 1691 -------------------------AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE----------EENKIKAEEA 1735
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 731 LSEAQAEEgslaaaKRALEARLEEAQRglSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLL--DRTVERLNKEL 808
Cdd:PTZ00121 1736 KKEAEEDK------KKAEEAKKDEEEK--KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMevDKKIKDIFDNF 1807
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 809 EQIGEDSKQALHQLQSQLEDYKEKSrREVADAQRQAKEWASEAEKSSGGLSRLQDETQRlrqtlqaSQADLDTarlDKEL 888
Cdd:PTZ00121 1808 ANIIEGGKEGNLVINDSKEMEDSAI-KEVADSKNMQLEEADAFEKHKFNKNNENGEDGN-------KEADFNK---EKDL 1876
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 229553905 889 LAQRLQGLEQEAEKKRRSQDDRTRQV-------KSLEEKVSRLEMELDEERNTVELLTDRINRSR 946
Cdd:PTZ00121 1877 KEDDEEEIEEADEIEKIDKDDIEREIpnnnmagKNNDIIDDKLDKDEYIKRDAEETREEIIKISK 1941
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
542-1104 |
8.52e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.71 E-value: 8.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 542 RELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELG------EKMEALQRELGQARagaggsRQVEELRK 615
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEklekevKELEELKEEIEELE------KELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 616 -LQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGarmaaeaeaalLVQRRTAVETTLQETQGENDEFRRRILGLEQ 694
Cdd:PRK03918 253 sKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE-----------KAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 695 QLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALE 774
Cdd:PRK03918 322 EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 775 EEGKQREALRRGKAELEEQKRLLDRTVERLNK----------ELEQigEDSKQALHQLQSQLEDYkEKSRREVADAQRQA 844
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrELTE--EHRKELLEEYTAELKRI-EKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 845 KEWASEAEKSSGGLSRLQDETQRLRQtLQASQADLdtarldKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRL 924
Cdd:PRK03918 479 RKELRELEKVLKKESELIKLKELAEQ-LKELEEKL------KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 925 EmELDEERNTVElltdrinRSRDQVDQLRTELMQERSARQdlecdkislERQNKDLKGRLASLEGFQKPSASLSQLESQN 1004
Cdd:PRK03918 552 E-ELKKKLAELE-------KKLDELEEELAELLKELEELG---------FESVEELEERLKELEPFYNEYLELKDAEKEL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1005 RELQERLQAEDREKTVLQSTNRKLERRVKELSIQID--------DERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDG 1076
Cdd:PRK03918 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKELEelekkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694
|
570 580
....*....|....*....|....*...
gi 229553905 1077 LRKKAQRELEEQHEANEQLQARIRALEK 1104
Cdd:PRK03918 695 TLEKLKEELEEREKAKKELEKLEKALER 722
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
713-1105 |
1.12e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 69.28 E-value: 1.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 713 LRDKLQRLEVEKQRLEEALSEAQAE----EGSLAAAKRALEAR---LEEAQRGLSRMGQEQQALSRALEEEGKQREA--L 783
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQlnqlKDEQNKIKKQLSEKqkeLEQNNKKIKELEKQLNQLKSEISDLNNQKEQdwN 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 784 RRGKAELEEQKRLLDRTVERLNKELEQIGEdskqaLHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQD 863
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQ-----LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 864 ETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEmeldEERNTVELLTDRIN 943
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT----NQDSVKELIIKNLD 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 944 RSRDQVD-QLRTELMQERSARQDLECDKISLERQNKDLKgrlaslegfqkpsaslsQLESQNRELQERLQAEDREKTVLQ 1022
Cdd:TIGR04523 461 NTRESLEtQLKVLSRSINKIKQNLEQKQKELKSKEKELK-----------------KLNEEKKELEEKVKDLTKKISSLK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1023 STNRKLERRVKELSIQIDDERQHVNdqKDQLSLKVKALKRQVDEAEEEIERLdglrKKAQRELEeqhEANEQLQARIRAL 1102
Cdd:TIGR04523 524 EKIEKLESEKKEKESKISDLEDELN--KDDFELKKENLEKEIDEKNKEIEEL----KQTQKSLK---KKQEEKQELIDQK 594
|
...
gi 229553905 1103 EKD 1105
Cdd:TIGR04523 595 EKE 597
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
352-1092 |
1.16e-11 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 69.23 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 352 KVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELETQVM 431
Cdd:TIGR00618 188 KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 432 ELQDQLKQGPVPAKeglMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQcqRDTEQ 511
Cdd:TIGR00618 268 RIEELRAQEAVLEE---TQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQ--SSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 512 LRKSIQDASQDQAALEAERQKMSALVRGLQRELEETsEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELGEkme 591
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT-QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA--- 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 592 alQRELGQARAGAGGSRQVEelrklQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAALLVQRRTAV 671
Cdd:TIGR00618 419 --FRDLQGQLAHAKKQQELQ-----QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 672 ETT-LQETQGENDEFRRRILGLEQQLKETrGLAEGgeaaearLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEA 750
Cdd:TIGR00618 492 VLArLLELQEEPCPLCGSCIHPNPARQDI-DNPGP-------LTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 751 RLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQLEDYK 830
Cdd:TIGR00618 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELAL 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 831 EKSRREvadaqRQAKEWASEAEKSSGGLSRLQDEtqrlrQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRrsqddr 910
Cdd:TIGR00618 644 KLTALH-----ALQLTLTQERVREHALSIRVLPK-----ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLR------ 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 911 trqvkSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQErsarQDLECDKISLERQNKDLKgRLASLEGF 990
Cdd:TIGR00618 708 -----ELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ----ARTVLKARTEAHFNNNEE-VTAALQTG 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 991 QKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEE 1070
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEEC 857
|
730 740
....*....|....*....|..
gi 229553905 1071 IERLDGLRKKAQRELEEQHEAN 1092
Cdd:TIGR00618 858 SKQLAQLTQEQAKIIQLSDKLN 879
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
749-1104 |
1.19e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 749 EARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELeqigedskqaLHQLQSqLED 828
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL----------LKEKEA-LER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 829 YKEKSRREVADAQRqakewasEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQ-RLQGLEQEAEKKRRSQ 907
Cdd:TIGR02169 238 QKEAIERQLASLEE-------ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 908 DDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASL 987
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 988 egfqkpsaslsqlesqnrelQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDqlslKVKALKRQVDEA 1067
Cdd:TIGR02169 391 --------------------REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA----KINELEEEKEDK 446
|
330 340 350
....*....|....*....|....*....|....*..
gi 229553905 1068 EEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEK 1104
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
344-1088 |
1.31e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 69.23 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 344 AGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVR 423
Cdd:pfam02463 162 AAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 424 SELETQVMELQDQLKQGPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQ 503
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 504 QCQRDTEQLRKSIQDASQDQAAL---EAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKD 580
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELkelEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 581 EMEEELGEKMEALQRELGQARAGAG-GSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGAR----- 654
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKeELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKEtqlvk 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 655 -------MAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRL 727
Cdd:pfam02463 482 lqeqlelLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 728 EEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEG---KQREALRRGKAELEEQKRLLDRTVERL 804
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKAtleADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 805 NKELEQIGEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRlQDETQRLRQTLQASQADLDTARL 884
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR-QLEIKKKEQREKEELKKLKLEAE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 885 DKELLAQRLQG-------LEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTElm 957
Cdd:pfam02463 721 ELLADRVQEAQdkineelKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA-- 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 958 QERSARQDLECDKISLERQNKDLKGRLASLEGfqkpsaslsQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSI 1037
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKI---------KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 869
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 229553905 1038 QIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQ 1088
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
559-1100 |
1.31e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.17 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 559 QKNKEELRAAKQELLQLRMEKDEMEEelgekMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQ 638
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIELLEP-----IRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 639 QLSQDCAEATKARGArmaaeaeaalLVQRRTAVETTLQETQGendefrRRILGLEQQLketrglaeggEAAEARLRDKLQ 718
Cdd:COG4913 306 RLEAELERLEARLDA----------LREELDELEAQIRGNGG------DRLEQLEREI----------ERLERELEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 719 RLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLD 798
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 799 RTVERLNKELEQIGEDSKQALHQLqSQLEDYKEKSRR-----E-----------VADAQ-RQAKEWAsEAEKSSGGLSRL 861
Cdd:COG4913 440 ARLLALRDALAEALGLDEAELPFV-GELIEVRPEEERwrgaiErvlggfaltllVPPEHyAAALRWV-NRLHLRGRLVYE 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 862 QDETQRLRQTLQASQADLDTARLD----------KELLAQR--------LQGLEQEA-----------EKKRRSQDDRTR 912
Cdd:COG4913 518 RVRTGLPDPERPRLDPDSLAGKLDfkphpfrawlEAELGRRfdyvcvdsPEELRRHPraitragqvkgNGTRHEKDDRRR 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 913 QVKSL------EEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRT--ELMQERSARQDLECDKISLERQNKDLKGRL 984
Cdd:COG4913 598 IRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQErrEALQRLAEYSWDEIDVASAEREIAELEAEL 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 985 ASLEgfqKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKelsiQIDDERQHVNDQKDQLSLKVKALKRQV 1064
Cdd:COG4913 678 ERLD---ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE----QAEEELDELQDRLEAAEDLARLELRAL 750
|
570 580 590
....*....|....*....|....*....|....*.
gi 229553905 1065 DEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIR 1100
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEERIDALRARLNRAE 786
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
468-1104 |
1.74e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 68.66 E-value: 1.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 468 RVEEQLRQRERELTALKgALKEEVASRDQEVEHVRQQCQRDTEQLrksiQDASQDQAALEAERQKMSALVRGLQRELEET 547
Cdd:pfam01576 2 RQEEEMQAKEEELQKVK-ERQQKAESELKELEKKHQQLCEEKNAL----QEQLQAETELCAEAEEMRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 548 SEETGHwqtmfQKNKEELRAAkqellQLRMEKDEMEEELGEKMEALQRElgqaragaGGSRQVEELRKLQGEA------E 621
Cdd:pfam01576 77 LHELES-----RLEEEEERSQ-----QLQNEKKKMQQHIQDLEEQLDEE--------EAARQKLQLEKVTTEAkikkleE 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 622 RVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKetrg 701
Cdd:pfam01576 139 DILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLE---- 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 702 lAEGGEAAE--ARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMgqeqqalsraleEEGKQ 779
Cdd:pfam01576 215 -GESTDLQEqiAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISEL------------QEDLE 281
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 780 REALRRGKAelEEQKRLLDRTVERLNKELEQIgEDSKQALHQLQSQLEdykeksrREVADAQRQAKEWASEAEkssgglS 859
Cdd:pfam01576 282 SERAARNKA--EKQRRDLGEELEALKTELEDT-LDTTAAQQELRSKRE-------QEVTELKKALEEETRSHE------A 345
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 860 RLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEerntvellt 939
Cdd:pfam01576 346 QLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQE--------- 416
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 940 drINRSRDQVDQLRTELmQERSARQDLECDKISlerqnkdlkGRLASLEG-FQKPSASLSQLESQNRELQERLQAEDREK 1018
Cdd:pfam01576 417 --LQARLSESERQRAEL-AEKLSKLQSELESVS---------SLLNEAEGkNIKLSKDVSSLESQLQDTQELLQEETRQK 484
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1019 TVLQSTNRKLERRVKELSIQIDDE---RQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQL 1095
Cdd:pfam01576 485 LNLSTRLRQLEDERNSLQEQLEEEeeaKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEK 564
|
....*....
gi 229553905 1096 QARIRALEK 1104
Cdd:pfam01576 565 AAAYDKLEK 573
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
683-1135 |
3.51e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 67.63 E-value: 3.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 683 DEFRRRILGLEQQLKETRGLAEGGEAAEArLRDKLQRLEVEKQRL-----EEALSEAQAEEGSLAAAKRALEARLEEAQR 757
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 758 GLSRMGQEQQALSRALEEEGKQR-EALRRGKAELEEQKRLLDRTVERLNKELEQIG---EDSKQALHQLQSQLEDYKEKS 833
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGlplPASAEEFAALRAEAAALLEAL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 834 RREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARldkELLAQRLQGLEQE-------------- 899
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR---DALAEALGLDEAElpfvgelievrpee 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 900 ------AEKKRRSQ-------DDRTRQVKSLEEKVsRLEMELDEERntVELLTDRINRSRDQVDQL-----------RTE 955
Cdd:COG4913 474 erwrgaIERVLGGFaltllvpPEHYAAALRWVNRL-HLRGRLVYER--VRTGLPDPERPRLDPDSLagkldfkphpfRAW 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 956 LMQERSARQDLEC----------DK-ISLERQNKDLKGRLASleGFQKPSASLSQLESQNRE----LQERLQAEDREKTV 1020
Cdd:COG4913 551 LEAELGRRFDYVCvdspeelrrhPRaITRAGQVKGNGTRHEK--DDRRRIRSRYVLGFDNRAklaaLEAELAELEEELAE 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1021 LQSTNRKLERRVKELSIQ-------------------IDDERQHVNDQKDQL---SLKVKALKRQVDEAEEEIERLDGLR 1078
Cdd:COG4913 629 AEERLEALEAELDALQERrealqrlaeyswdeidvasAEREIAELEAELERLdasSDDLAALEEQLEELEAELEELEEEL 708
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 1079 KKAQRELEEQHEANEQLQARIRALEKDSWRKAARSAAESSLQQEGLSSDEEFDGVYN 1135
Cdd:COG4913 709 DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER 765
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
668-1118 |
3.81e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.76 E-value: 3.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 668 RTAVETTLQETQGENDEFRRRILGLEQqlKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAeegslaaakra 747
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEE--KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADE----------- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 748 LEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRgkaELEEQKRLLDRTVERLNKELEQIGEDS--KQALHQLQSQ 825
Cdd:PRK02224 242 VLEEHEERREELETLEAEIEDLRETIAETEREREELAE---EVRDLRERLEELEEERDDLLAEAGLDDadAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 826 LEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQtlqasqadlDTARLDKELlaqrlQGLEQEAEKKRR 905
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE---------EAAELESEL-----EEAREAVEDRRE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 906 SQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELmqeRSARQDLEcdkislerQNKDLkgrla 985
Cdd:PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL---RTARERVE--------EAEAL----- 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 986 sLEGFQKPSASLSQLESQNRELQErlqaEDREKTvlqstnRKLERRVKELSIQIDDERQHVNDQKDqlslkVKALKRQVD 1065
Cdd:PRK02224 449 -LEAGKCPECGQPVEGSPHVETIE----EDRERV------EELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIE 512
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 229553905 1066 EAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRAL--EKDSWRKAARSAAESS 1118
Cdd:PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELeaEAEEKREAAAEAEEEA 567
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
694-1105 |
4.74e-11 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 67.10 E-value: 4.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 694 QQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALE--ARLEEAQRGLSRMGQEQQALSR 771
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 772 ALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQLEDYKE---KSRREVADAQRQAKEWA 848
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEeleEAQEELEELEEELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 849 SEAEkssggLSRLQDETQRLRQTLQA----------SQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLE 918
Cdd:COG4717 234 NELE-----AAALEERLKEARLLLLIaaallallglGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 919 EKVSR-------LEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLEGFQ 991
Cdd:COG4717 309 ALPALeeleeeeLEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 992 kpsASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKElsiQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEI 1071
Cdd:COG4717 389 ---AALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE---ELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420 430
....*....|....*....|....*....|....
gi 229553905 1072 ERLdglrkKAQRELEEQHEANEQLQARIRALEKD 1105
Cdd:COG4717 463 EQL-----EEDGELAELLQELEELKAELRELAEE 491
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
348-1089 |
8.17e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.68 E-value: 8.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 348 ELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQkgeTRQSGTELQNLRLLLDQAGRVRSELE 427
Cdd:pfam15921 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDM---LEDSNTQIEQLRKMMLSHEGVLQEIR 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 428 TQVMELQDQLKQgpvpakeglmKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKG-------ALKEEVASRDQEVEH 500
Cdd:pfam15921 191 SILVDFEEASGK----------KIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGrifpvedQLEALKSESQNKIEL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 501 VRQQCQRDTEQLrksIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAkqeLLQLRMEKD 580
Cdd:pfam15921 261 LLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLEST---VSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 581 EMEEELGEKMEALQRELGQARAGAGGSRqVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARM----- 655
Cdd:pfam15921 335 EAKRMYEDKIEELEKQLVLANSELTEAR-TERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTgnsit 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 656 -----AAEAEAALLVQRRTAVETTLQ-ETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEE 729
Cdd:pfam15921 414 idhlrRELDDRNMEVQRLEALLKAMKsECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 730 ALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQR------EALRRGKAELEEQKRLLDRTVER 803
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRnvqtecEALKLQMAEKDKVIEILRQQIEN 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 804 LNKELEQIGEdSKQALHQLQSQLEdykeksrREVADAQRQAKEWASEAEKSSGGLSRLQdetqrlrqtlqasqadldtar 883
Cdd:pfam15921 574 MTQLVGQHGR-TAGAMQVEKAQLE-------KEINDRRLELQEFKILKDKKDAKIRELE--------------------- 624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 884 ldkellaQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRI--------NRSRDQVDQLRTE 955
Cdd:pfam15921 625 -------ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYevlkrnfrNKSEEMETTTNKL 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 956 LMQERSARQDLECDKISLERQNKDLKGRLASLEGFQK----PSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERR 1031
Cdd:pfam15921 698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQE 777
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 229553905 1032 VKELSIQ---IDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRE---LEEQH 1089
Cdd:pfam15921 778 LSTVATEknkMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQEsvrLKLQH 841
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
341-1088 |
1.04e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.15 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 341 KVLAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKG-ETRQSGTELQNLRLLLDQA 419
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAkEEEELKSELLKLERRKVDD 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 420 GRVRSELETQVMELQDQLKQgpvpakegLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVE 499
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKK--------EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 500 HVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETsEETGHWQTMFQKNKEELRAAKQELLQLRMEK 579
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEIL-EEEEESIELKQGKLTEEKEELEKQELKLLKD 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 580 DEMEEELGEKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATK---ARGARMA 656
Cdd:pfam02463 464 ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDlgvAVENYKV 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 657 AEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEAR-LRDKLQRLEVEKQRLEEALSEAQ 735
Cdd:pfam02463 544 AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIdPILNLAQLDKATLEADEDDKRAK 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 736 AEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLdRTVERLNKELEQIGEDS 815
Cdd:pfam02463 624 VVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKA-ESELAKEEILRRQLEIK 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 816 KQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTL-----QASQADLDTARLDKELLA 890
Cdd:pfam02463 703 KKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKeekeeEKSELSLKEKELAEEREK 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 891 QRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDK 970
Cdd:pfam02463 783 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEE 862
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 971 ISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHV---- 1046
Cdd:pfam02463 863 ITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEelll 942
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 229553905 1047 ----------NDQKDQLSLKVKALKR--------------------QVDEAEEEIERLDGLRKKAQRELEEQ 1088
Cdd:pfam02463 943 eeadekekeeNNKEEEEERNKRLLLAkeelgkvnlmaieefeekeeRYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
871-1117 |
1.25e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.79 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 871 TLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVD 950
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 951 QLRTELMQERSARQDLECDKISLERQNKDLkgRLASLEGFQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLER 1030
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLA--LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1031 RVKELSIQIDDERQhvndqkdqlslKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKDSWRKA 1110
Cdd:COG4942 172 ERAELEALLAELEE-----------ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*..
gi 229553905 1111 ARSAAES 1117
Cdd:COG4942 241 ERTPAAG 247
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
343-940 |
1.30e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 65.76 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 343 LAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEE-----KAEECLRLQELLERQKGETRQSGTELQNLRLLLD 417
Cdd:TIGR00618 245 LTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERinrarKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRA 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 418 QAGRVRSELETQVMELQDQLK-QGPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQ 496
Cdd:TIGR00618 325 KLLMKRAAHVKQQSSIEEQRRlLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDI 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 497 EVEHVRQQCQRDTEQlRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKE--ELRAAKQELLQ 574
Cdd:TIGR00618 405 LQREQATIDTRTSAF-RDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEreQQLQTKEQIHL 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 575 LRMEKDEMEEELGEKMEALQREL-GQAR--------AGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCA 645
Cdd:TIGR00618 484 QETRKKAVVLARLLELQEEPCPLcGSCIhpnparqdIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 646 EATKAR---GARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEV 722
Cdd:TIGR00618 564 QMQEIQqsfSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELAL 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 723 EKQRLE-EALSEAQAEEGSLAAAKRALEAR-LEEAQRGLSRMGQEQQALSRALEEEGKQREALR-------RGKAELEEQ 793
Cdd:TIGR00618 644 KLTALHaLQLTLTQERVREHALSIRVLPKElLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRelethieEYDREFNEI 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 794 KRLLDRTVERLNKELEQIGEDSKQALHQ----LQSQLEDYKEKSRREVADAQRQAKEwaSEAEKSSGGLSRLQDETQRLR 869
Cdd:TIGR00618 724 ENASSSLGSDLAAREDALNQSLKELMHQartvLKARTEAHFNNNEEVTAALQTGAEL--SHLAAEIQFFNRLREEDTHLL 801
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 229553905 870 QTLQAS-----QADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTD 940
Cdd:TIGR00618 802 KTLEAEigqeiPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
467-962 |
2.14e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 65.32 E-value: 2.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 467 QRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQCQ----RDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQR 542
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 543 ELEETSEEtghwqtmFQKNKEELRAAKQELlqlrmekDEMEEELGEKMEALQRELGQARagaggsrqvEELRKLQGEaer 622
Cdd:COG4913 374 PLPASAEE-------FAALRAEAAALLEAL-------EEELEALEEALAEAEAALRDLR---------RELRELEAE--- 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 623 VRELEQQNLQLQKKTQQLSQDCAEATKARGARMA----AEAEAALLVQRRTAVETTLQEtqgendeFRRRILGLEQQLKE 698
Cdd:COG4913 428 IASLERRKSNIPARLLALRDALAEALGLDEAELPfvgeLIEVRPEEERWRGAIERVLGG-------FALTLLVPPEHYAA 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 699 trglaeggeAAEA----RLRDKLQRLEVEKQRLEEALseAQAEEGSLA--------AAKRALEARLEE------------ 754
Cdd:COG4913 501 ---------ALRWvnrlHLRGRLVYERVRTGLPDPER--PRLDPDSLAgkldfkphPFRAWLEAELGRrfdyvcvdspee 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 755 ---AQRGLSRMGQEQQALSR-------ALEEE-------GKQREALRRGKAELEEQKRLLDRTVERLNKELEQIgEDSKQ 817
Cdd:COG4913 570 lrrHPRAITRAGQVKGNGTRhekddrrRIRSRyvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDAL-QERRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 818 ALHQLQSQLEDYKEKS--RREVADAQRQAKEwaseAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQG 895
Cdd:COG4913 649 ALQRLAEYSWDEIDVAsaEREIAELEAELER----LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ 724
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 229553905 896 LEQEAEKKRRSQDDRTRQVKS-----LEEKVSRLEMElDEERNTVELLTDRINRSRDQVDQLRTELMQERSA 962
Cdd:COG4913 725 AEEELDELQDRLEAAEDLARLelralLEERFAAALGD-AVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
711-935 |
2.48e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 2.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 711 ARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAEL 790
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 791 EEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQLEDYKE--KSRREVADAQRQAKEwasEAEKSSGGLSRLQDETQRL 868
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYlaPARREQAEELRADLA---ELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 869 RQTLQASQADLDTARLDKEllaQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTV 935
Cdd:COG4942 180 LAELEEERAALEALKAERQ---KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
347-956 |
2.65e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 2.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 347 GELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRllldqagrvrsEL 426
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE-----------EL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 427 ETQVMELQDQLKQgpvpaKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEevasrdqevehvrqqcq 506
Cdd:PRK03918 237 KEEIEELEKELES-----LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE----------------- 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 507 rdTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEEtghwqtmfqknKEELRAAKQELLQLRMEKDEMEE-- 584
Cdd:PRK03918 295 --YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK-----------EERLEELKKKLKELEKRLEELEErh 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 585 ELGEKMEALQRELGQARAGAGG------SRQVEELRKLQGEAER-VRELEQQNLQLQKKTQQLSQDCAEATKARG----- 652
Cdd:PRK03918 362 ELYEEAKAKKEELERLKKRLTGltpeklEKELEELEKAKEEIEEeISKITARIGELKKEIKELKKAIEELKKAKGkcpvc 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 653 ARMAAEAEAALLVQRRTA----VETTLQETQGENDEFRRRILGLEQQLKETRGLaeggeaaeARLRDKLQRLEvekqRLE 728
Cdd:PRK03918 442 GRELTEEHRKELLEEYTAelkrIEKELKEIEEKERKLRKELRELEKVLKKESEL--------IKLKELAEQLK----ELE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 729 EALSEAQAEEgslaaakraLEARLEEAQRGLSRMGQEQQALSRaLEEEGKQREALRRGKAELEEQKRLLDRTVERLNKEL 808
Cdd:PRK03918 510 EKLKKYNLEE---------LEKKAEEYEKLKEKLIKLKGEIKS-LKKELEKLEELKKKLAELEKKLDELEEELAELLKEL 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 809 EQIGEDSKQALHQLQSQLEDYKEK------SRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQA-----SQA 877
Cdd:PRK03918 580 EELGFESVEELEERLKELEPFYNEylelkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElekkySEE 659
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 229553905 878 DLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEmELDEERNTVELLTDRINRSRDQVDQLRTEL 956
Cdd:PRK03918 660 EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE-KAKKELEKLEKALERVEELREKVKKYKALL 737
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
318-961 |
3.53e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.29 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 318 SVRRKVSLVLEQMQPLVMTTGSAKVLAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELler 397
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETL--- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 398 qkgetrqsGTELQNLRLLLDQAGRVRSELETQVMELQDQLkqgpvpakEGLMKDLLETRELLEEVLEGKQRVEEQlrqre 477
Cdd:PRK02224 257 --------EAEIEDLRETIAETEREREELAEEVRDLRERL--------EELEEERDDLLAEAGLDDADAEAVEAR----- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 478 reltalkgalKEEVASRDQEVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTM 557
Cdd:PRK02224 316 ----------REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 558 FQKNKEELRAAKQELLQLRMEKDEMEEELgekmEALQRELGQARAgaggsrQVEELR-KLQGEAERVRELEQqnLQLQKK 636
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFL----EELREERDELRE------REAELEaTLRTARERVEEAEA--LLEAGK 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 637 TQQLSQDCAEATKARGARmaaeaeaallvQRRTAVEttlqETQGENDEFRRRILGLEQQLKETRGLAEggeaAEARLRDK 716
Cdd:PRK02224 454 CPECGQPVEGSPHVETIE-----------EDRERVE----ELEAELEDLEEEVEEVEERLERAEDLVE----AEDRIERL 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 717 LQRLEVEKQRLEEAlsEAQAEEGSLAAakraleARLEEAQRGLSRMGQEQQALSRALEEEGkqrEALRRGKAELEEQKRL 796
Cdd:PRK02224 515 EERREDLEELIAER--RETIEEKRERA------EELRERAAELEAEAEEKREAAAEAEEEA---EEAREEVAELNSKLAE 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 797 LDRTVERLNKEleqigEDSKQALHQLQSQLEDYKEKsRREVADAQRQAKEwaseaekssgglsRLQDETQRLRQTLQASQ 876
Cdd:PRK02224 584 LKERIESLERI-----RTLLAAIADAEDEIERLREK-REALAELNDERRE-------------RLAEKRERKRELEAEFD 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 877 AD-LDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEmELDEERNTVELLTDRINRSRDQVDQLRTE 955
Cdd:PRK02224 645 EArIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE-ELRERREALENRVEALEALYDEAEELESM 723
|
....*.
gi 229553905 956 LMQERS 961
Cdd:PRK02224 724 YGDLRA 729
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
445-1080 |
6.16e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 63.70 E-value: 6.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 445 KEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQCQRDTEQLRKSIQD----AS 520
Cdd:pfam12128 264 HFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdietAA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 521 QDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAA----KQELLQLRMEKDEMEEELGEKMEALQRE 596
Cdd:pfam12128 344 ADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDiagiKDKLAKIREARDRQLAVAEDDLQALESE 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 597 LGQARAGAGGSRQVEELR-------------KLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAAL 663
Cdd:pfam12128 424 LREQLEAGKLEFNEEEYRlksrlgelklrlnQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQ 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 664 LVQRRTAVETTLQETQGENDE---------------FRRRILGLEQQL---------------KETRGLAEGGEAAEARL 713
Cdd:pfam12128 504 ASEALRQASRRLEERQSALDElelqlfpqagtllhfLRKEAPDWEQSIgkvispellhrtdldPEVWDGSVGGELNLYGV 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 714 RDKLQRLEV-EKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLS-RMGQEQQALSRALEEEGKQREALRRGKAELE 791
Cdd:pfam12128 584 KLDLKRIDVpEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANgELEKASREETFARTALKNARLDLRRLFDEKQ 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 792 EQKRLLDRTVER----LNKELEQIGEDSKQALHQLQSQLEDYKEKSRRevADAQRQAKEWASEAEKSsgglsrlqDETQR 867
Cdd:pfam12128 664 SEKDKKNKALAErkdsANERLNSLEAQLKQLDKKHQAWLEEQKEQKRE--ARTEKQAYWQVVEGALD--------AQLAL 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 868 LRQTLQASQADLDtarldkellaQRLQGLEQeaekkrrsqdDRTRQVKSL---EEKVSRLEMELDEERNTVElltdRINR 944
Cdd:pfam12128 734 LKAAIAARRSGAK----------AELKALET----------WYKRDLASLgvdPDVIAKLKREIRTLERKIE----RIAV 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 945 SRDQVDQLRtELMQER--SARQDLECDKISLERQNKDLKGRLASLEgfQKPSASLSQLESQNRELQERLQAEDREKTVLQ 1022
Cdd:pfam12128 790 RRQEVLRYF-DWYQETwlQRRPRLATQLSNIERAISELQQQLARLI--ADTKLRRAKLEMERKASEKQQVRLSENLRGLR 866
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 229553905 1023 STNRKLER-RVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVdeaEEEIERLDGLRKK 1080
Cdd:pfam12128 867 CEMSKLATlKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV---KKYVEHFKNVIAD 922
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
340-807 |
1.99e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 340 AKVLAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQA 419
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 420 GRVRSELETQVMELQDQLKQgpvpakeglmkdllETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVE 499
Cdd:COG1196 448 AEEEAELEEEEEALLELLAE--------------LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 500 HVRQQCQRDTEQLRKSIQDASQDQAALEAErqkMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEK 579
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAA---LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 580 DEMEEELGEKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEA 659
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 660 EAALLVQRRTAVETTLQETQGENDEfRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEG 739
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELEL-EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 229553905 740 SLAAAKRALEARLEEAQRGLSRMGQEQQALS----RALEEEGKQRE---ALRRGKAELEEQKRLLDRTVERLNKE 807
Cdd:COG1196 750 EEALEELPEPPDLEELERELERLEREIEALGpvnlLAIEEYEELEErydFLSEQREDLEEARETLEEAIEEIDRE 824
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
742-985 |
2.63e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 2.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 742 AAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIgedsKQALHQ 821
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL----EKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 822 LQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAE 901
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 902 KKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELmqERSARQDLECDKISLERQNKDLK 981
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI--ARLEAEAAAAAERTPAAGFAALK 252
|
....
gi 229553905 982 GRLA 985
Cdd:COG4942 253 GKLP 256
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
467-899 |
5.82e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.17 E-value: 5.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 467 QRVEEQLRQRERELTALKgALKEEVASRDQEVEHVRQQ---CQRDTEQLRKSIQ--DASQDQAALEAERQKMSALVRGLQ 541
Cdd:COG4717 74 KELEEELKEAEEKEEEYA-ELQEELEELEEELEELEAEleeLREELEKLEKLLQllPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 542 RELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELGEKMEALQRELGQARAGAggSRQVEELRKLQGEAE 621
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEEL--EEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 622 RVrELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRG 701
Cdd:COG4717 231 QL-ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 702 LAEGGEAAEARLRDKLQRLEVEKQRLEEALSE-----AQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSR-ALEE 775
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLElldriEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEeELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 776 EGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDS-KQALHQLQSQLEDYKEksRREVADAQRQAKEWASEAEKS 854
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEElEEELEELEEELEELEE--ELEELREELAELEAELEQLEE 467
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 229553905 855 SGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQE 899
Cdd:COG4717 468 DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
513-1074 |
9.42e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.75 E-value: 9.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 513 RKSIQDASQDQaaLEAERQKMSALVRGLQRELEETSEetghwqtMFQKNKEELRAA----KQELLQLRMEKDEM------ 582
Cdd:pfam15921 65 RKIIAYPGKEH--IERVLEEYSHQVKDLQRRLNESNE-------LHEKQKFYLRQSvidlQTKLQEMQMERDAMadirrr 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 583 ----EEELGEKMEALQRELGQARA-----GAGGSRQVEELRKLQGEAERVreleqqnlqlqkkTQQLSQDCAEATKARGA 653
Cdd:pfam15921 136 esqsQEDLRNQLQNTVHELEAAKClkedmLEDSNTQIEQLRKMMLSHEGV-------------LQEIRSILVDFEEASGK 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 654 RMAAEAEAALLVQRR--TAVETTLQETQGENDEFRRRILGLEQQLketrglaeggEAAEARLRDKLQRLEVEKQ-RLEEA 730
Cdd:pfam15921 203 KIYEHDSMSTMHFRSlgSAISKILRELDTEISYLKGRIFPVEDQL----------EALKSESQNKIELLLQQHQdRIEQL 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 731 LSEAQAEEGSLAaakralearlEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEqkrlldrTVERLNKELEQ 810
Cdd:pfam15921 273 ISEHEVEITGLT----------EKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLES-------TVSQLRSELRE 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 811 IgedskqalhqlQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLA 890
Cdd:pfam15921 336 A-----------KRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLW 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 891 QRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTElmqersarqdLECDK 970
Cdd:pfam15921 405 DRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ----------LESTK 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 971 ISLERQNKDLKGRLASLEGFQKpsaSLSQLESQNRELQERLQAEDREKTVLQStnrKLERRVKELsiqidderQHVNDQK 1050
Cdd:pfam15921 475 EMLRKVVEELTAKKMTLESSER---TVSDLTASLQEKERAIEATNAEITKLRS---RVDLKLQEL--------QHLKNEG 540
|
570 580
....*....|....*....|....*..
gi 229553905 1051 DQL---SLKVKALKRQVDEAEEEIERL 1074
Cdd:pfam15921 541 DHLrnvQTECEALKLQMAEKDKVIEIL 567
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
582-1030 |
1.13e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 582 MEEELGEKMEALQRELGQARAGAGG--SRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARgARMAAEA 659
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKelKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL-EKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 660 EAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKqrlEEALSEAQAEEG 739
Cdd:COG4717 126 QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLAT---EEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 740 SLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREaLRRGKAELE----------EQKRLLDRTVERLNKELE 809
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER-LKEARLLLLiaaallallgLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 810 QIGEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLS------------RLQDETQRLRQTLQASQA 877
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPpdlspeellellDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 878 DLDTARLDKELlAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRsrdqvDQLRTELM 957
Cdd:COG4717 362 ELQLEELEQEI-AALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE-----EELEEELE 435
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 229553905 958 QERSARQDLECDKISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLER 1030
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
434-1122 |
2.32e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 58.58 E-value: 2.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 434 QDQLKQGPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKeevaSRDQEVEHVRQQCQRDTEQLR 513
Cdd:pfam05483 62 QEGLKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIE----AQRKAIQELQFENEKVSLKLE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 514 KSIQDASQDQAALEAERQKMSALVRGLQRELEETS------EETGHWQTMFQKNKEELRAAKQEL-LQLRMEKDEMEEEL 586
Cdd:pfam05483 138 EEIQENKDLIKENNATRHLCNLLKETCARSAEKTKkyeyerEETRQVYMDLNNNIEKMILAFEELrVQAENARLEMHFKL 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 587 GEKMEALQR-ELGQARAGAGGSRQV--------EELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAA 657
Cdd:pfam05483 218 KEDHEKIQHlEEEYKKEINDKEKQVsllliqitEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 658 EAEAALLVQRRTAVETTLQETqgendefrrrilgLEQQLKETRGLAEGGEAaearlrdKLQRLEVEKQRLEEALSEAQAE 737
Cdd:pfam05483 298 LEDIKMSLQRSMSTQKALEED-------------LQIATKTICQLTEEKEA-------QMEELNKAKAAHSFVVTEFEAT 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 738 EGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREalrRGKAELEEQKRLL--DRTVERLNKELEQIGEDS 815
Cdd:pfam05483 358 TCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKN---NKEVELEELKKILaeDEKLLDEKKQFEKIAEEL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 816 KQALHQLQSQLedykEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQG 895
Cdd:pfam05483 435 KGKEQELIFLL----QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASD 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 896 LEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVdqlRTELMQERSARQDLECDKISLER 975
Cdd:pfam05483 511 MTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV---KCKLDKSEENARSIEYEVLKKEK 587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 976 QNKDLKGRLASL-EGFQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRV----KELSIQIDDERQHVNDQK 1050
Cdd:pfam05483 588 QMKILENKCNNLkKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELasakQKFEEIIDNYQKEIEDKK 667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1051 ---DQLSLKVKALKRQVDEAEEEIERLDglrKKAQRELEE--------QHEANEQLQARIRALEKDSWRKAARSAAESSL 1119
Cdd:pfam05483 668 iseEKLLEEVEKAKAIADEAVKLQKEID---KRCQHKIAEmvalmekhKHQYDKIIEERDSELGLYKNKEQEQSSAKAAL 744
|
...
gi 229553905 1120 QQE 1122
Cdd:pfam05483 745 EIE 747
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
510-1050 |
6.03e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 57.22 E-value: 6.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 510 EQLRKSIQDASQDQAALEAERQKMSALVRglqrELEETSEETghwqTMFQKNKEELRAAKQELLQLRMEKDEMEEELGEK 589
Cdd:PRK01156 190 EKLKSSNLELENIKKQIADDEKSHSITLK----EIERLSIEY----NNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 590 MEALQRELGQARAGAGGSrqvEELRKLQGEA-----ERVRELEQQNLQLQKKTQQLSQDCAEATK-----ARGARMAAEA 659
Cdd:PRK01156 262 ESDLSMELEKNNYYKELE---ERHMKIINDPvyknrNYINDYFKYKNDIENKKQILSNIDAEINKyhaiiKKLSVLQKDY 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 660 EAALLVQRRTA-VETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVE----KQRLEE---AL 731
Cdd:PRK01156 339 NDYIKKKSRYDdLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDpdaiKKELNEinvKL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 732 SEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQ--ALSRALEEEGKQR--EALRRGKAELEEQKRLLDRTVERLNKE 807
Cdd:PRK01156 419 QDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpVCGTTLGEEKSNHiiNHYNEKKSRLEEKIREIEIEVKDIDEK 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 808 LEQigedskqalhqlQSQLEDYKEKSR-REVADAQRQAKEWASEAEKSSGGLSRLQDetqrlrQTLQASQADLDTARLDK 886
Cdd:PRK01156 499 IVD------------LKKRKEYLESEEiNKSINEYNKIESARADLEDIKIKINELKD------KHDKYEEIKNRYKSLKL 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 887 ELLAQR----LQGLEQ----EAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQ 958
Cdd:PRK01156 561 EDLDSKrtswLNALAVisliDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 959 ERSARQDLEcDKIslerqnKDLKGRLASLEGFQKP----SASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKE 1034
Cdd:PRK01156 641 NKILIEKLR-GKI------DNYKKQIAEIDSIIPDlkeiTSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINE 713
|
570
....*....|....*.
gi 229553905 1035 LSIQIDDERQHVNDQK 1050
Cdd:PRK01156 714 LSDRINDINETLESMK 729
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
670-905 |
6.82e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 6.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 670 AVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALE 749
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 750 ARLEEAQRGLSRMGQEQQALSRALEEEGKqreALRRGKAELEEQKRLLDRTVERLNKELEQIGEDsKQALHQLQSQLEDY 829
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALL---LSPEDFLDAVRRLQYLKYLAPARREQAEELRAD-LAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 229553905 830 KEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQAdldtarlDKELLAQRLQGLEQEAEKKRR 905
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ-------EAEELEALIARLEAEAAAAAE 241
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
353-1088 |
6.87e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.98 E-value: 6.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 353 VEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVR-SELETQVM 431
Cdd:TIGR00606 314 VREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERgPFSERQIK 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 432 ELQDQLKQGpvpaKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQCQRDT-- 509
Cdd:TIGR00606 394 NFHTLVIER----QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEgs 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 510 --------EQLRKSIQDAS------------QDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAK 569
Cdd:TIGR00606 470 sdrileldQELRKAERELSkaeknsltetlkKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDE 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 570 QELLQLRMEKDEMEEELGEKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQ-NLQLQKKTQQL-------- 640
Cdd:TIGR00606 550 QIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHiNNELESKEEQLssyedklf 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 641 ----SQDCAEATKARGARMAAEAEAALLVQRRTAV-ETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRD 715
Cdd:TIGR00606 630 dvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAVySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 716 KLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALrrgKAELEEQKR 795
Cdd:TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTI---MPEEESAKV 786
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 796 LLDRT--VERLNKELEQIGEDSKQALHQLQS-QLEDYKEKSRREVADAQRQAKEWASEAEKssggLSRLQDETQRLRQTL 872
Cdd:TIGR00606 787 CLTDVtiMERFQMELKDVERKIAQQAAKLQGsDLDRTVQQVNQEKQEKQHELDTVVSKIEL----NRKLIQDQQEQIQHL 862
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 873 QASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSR----DQ 948
Cdd:TIGR00606 863 KSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNkkaqDK 942
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 949 VDQLRTELMQERSARQDLE------CDKISLERQNkDLKGRLASLEGFQKPSaslSQLESQNRELQERLQAEDREKTVLQ 1022
Cdd:TIGR00606 943 VNDIKEKVKNIHGYMKDIEnkiqdgKDDYLKQKET-ELNTVNAQLEECEKHQ---EKINEDMRLMRQDIDTQKIQERWLQ 1018
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 229553905 1023 S--TNRKLERRVKELSiqiDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQ 1088
Cdd:TIGR00606 1019 DnlTLRKRENELKEVE---EELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKE 1083
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
675-1116 |
6.98e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 57.27 E-value: 6.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 675 LQETQGENDEFRRRIL--------GLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQA---EEGSLAA 743
Cdd:PRK04863 249 IRVTQSDRDLFKHLITestnyvaaDYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAElneAESDLEQ 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 744 AKRALEARLEEAQRGLSRMGQEQQA------LSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEqigeDSKQ 817
Cdd:PRK04863 329 DYQAASDHLNLVQTALRQQEKIERYqadleeLEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA----DYQQ 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 818 ALHQLQSQLEDYkeksrREVADAQRQAKEWASEAEKSSGGLSRLQDEtqrlrqtLQASQADLDTARLDkelLAQRLQgLE 897
Cdd:PRK04863 405 ALDVQQTRAIQY-----QQAVQALERAKQLCGLPDLTADNAEDWLEE-------FQAKEQEATEELLS---LEQKLS-VA 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 898 QEAekkrRSQDDRTRQ-VKSLEEKVSRLemelDEERNTVELLTDRINrSRDQVDQLRTELMQERSARQDLECDKiSLERQ 976
Cdd:PRK04863 469 QAA----HSQFEQAYQlVRKIAGEVSRS----EAWDVARELLRRLRE-QRHLAEQLQQLRMRLSELEQRLRQQQ-RAERL 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 977 NKDLKGRLaslegfQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVnDQKDQLSLK 1056
Cdd:PRK04863 539 LAEFCKRL------GKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA-PAWLAAQDA 611
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1057 VKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKDSWRKAARSAAE 1116
Cdd:PRK04863 612 LARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSE 671
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
351-833 |
7.60e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 7.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 351 QKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELETQV 430
Cdd:TIGR04523 211 QKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 431 MELQDQLKQGPVPAKEGLMKDlletrelleevlegkqrVEEQLRQRERELTALK----------GALKEEVASRDQEVEH 500
Cdd:TIGR04523 291 NQLKSEISDLNNQKEQDWNKE-----------------LKSELKNQEKKLEEIQnqisqnnkiiSQLNEQISQLKKELTN 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 501 VRQQCQRDTEQLRK---SIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQT---MFQKNKEELRAAKQELLQ 574
Cdd:TIGR04523 354 SESENSEKQRELEEkqnEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEqikKLQQEKELLEKEIERLKE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 575 LRMEKDEMEEELGEKMEALQ---RELGQARagaggSRQVEELRKLQGEAERVR-ELEQQNLQLQKKTQQLSQDCAEATKa 650
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKEliiKNLDNTR-----ESLETQLKVLSRSINKIKqNLEQKQKELKSKEKELKKLNEEKKE- 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 651 rgarmaaeaeaallvqrrtaVETTLQETQGENDEFRRRILGLEQQLKETrglaeggEAAEARLRDKLQRLEVEKQR--LE 728
Cdd:TIGR04523 508 --------------------LEEKVKDLTKKISSLKEKIEKLESEKKEK-------ESKISDLEDELNKDDFELKKenLE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 729 EALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKEL 808
Cdd:TIGR04523 561 KEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKK 640
|
490 500
....*....|....*....|....*
gi 229553905 809 EQIgedsKQALHQLQSQLEDYKEKS 833
Cdd:TIGR04523 641 NKL----KQEVKQIKETIKEIRNKW 661
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
348-1104 |
8.34e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.98 E-value: 8.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 348 ELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEEclRLQELLERQKG--ETRQSGTELQNLRLLLDQAGRVRSE 425
Cdd:TIGR00606 206 QMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYEN--ELDPLKNRLKEieHNLSKIMKLDNEIKALKSRKKQMEK 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 426 LETQVMELQDQLKQGPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVE-HVRQQ 504
Cdd:TIGR00606 284 DNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADrHQEHI 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 505 CQRDTEQLRKSIQ---DASQDQAALEAERQKMSALV-RGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKD 580
Cdd:TIGR00606 364 RARDSLIQSLATRlelDGFERGPFSERQIKNFHTLViERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 581 EMEEELGEKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAE 660
Cdd:TIGR00606 444 LKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQE 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 661 AALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAeGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGS 740
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLL-GYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELAS 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 741 LAAAKRALEARLEEAQRGLSRMGQE------QQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNkeleqigeD 814
Cdd:TIGR00606 603 LEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLT--------D 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 815 SKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDtaRLDKELLAQRlq 894
Cdd:TIGR00606 675 ENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIID--LKEKEIPELR-- 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 895 gleqeaEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDR--INRSRDQVDQLRTELMQERSARQ----DLEC 968
Cdd:TIGR00606 751 ------NKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVtiMERFQMELKDVERKIAQQAAKLQgsdlDRTV 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 969 DKISLERQNKDLKGRLASLEGFQKPSASLSQLEsQNRELQERLQAEDREKTVLQST---NRKLERRVKELSIQIDDERQH 1045
Cdd:TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE-QIQHLKSKTNELKSEKLQIGTNlqrRQQFEEQLVELSTEVQSLIRE 903
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 229553905 1046 VNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEK 1104
Cdd:TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
467-1129 |
9.14e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.52 E-value: 9.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 467 QRVEEQLRQRERELTALKGALKEEVASRdQEVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALvRGLQRELEE 546
Cdd:TIGR00618 204 QLLTLCTPCMPDTYHERKQVLEKELKHL-REALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEEL-RAQEAVLEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 547 TSEETGhwqtmFQKNKEELRAAKQELLQLRMEKDEMEEELGEKMEALQRELGQARAGAGGSRQVEELRKL-----QGEAE 621
Cdd:TIGR00618 282 TQERIN-----RARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLlqtlhSQEIH 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 622 RVRELEQQNLQLQKKTQQLSqdcaeatkargarmaAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRG 701
Cdd:TIGR00618 357 IRDAHEVATSIREISCQQHT---------------LTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRD 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 702 LAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEeaqrglsrmgQEQQALSRALEEEGKQRE 781
Cdd:TIGR00618 422 LQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQ----------QLQTKEQIHLQETRKKAV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 782 ALRRgKAELEEQKRLLDRTVERLNKELEQIGEdsKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRL 861
Cdd:TIGR00618 492 VLAR-LLELQEEPCPLCGSCIHPNPARQDIDN--PGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 862 QDETQRLRQTLQASQADLDTAR--------LDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERN 933
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDIPNLQnitvrlqdLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTAL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 934 TVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLEgfQKPSASLSQLESQNRELQERLQA 1013
Cdd:TIGR00618 649 HALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQ--TLLRELETHIEEYDREFNEIENA 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1014 EDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEeierldglrkkAQRELEEQHEANE 1093
Cdd:TIGR00618 727 SSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSH-----------LAAEIQFFNRLRE 795
|
650 660 670
....*....|....*....|....*....|....*.
gi 229553905 1094 QLQARIRALEKDSWRKAARSAAESSLQQEGLSSDEE 1129
Cdd:TIGR00618 796 EDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEE 831
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
667-1074 |
1.10e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.50 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 667 RRTAveTTLQETQGENDEFRRRILGLEQQL--------KETRGLAEGGEAAEARLRDKLQRLEVEKQRLEE---ALSEAQ 735
Cdd:COG3096 242 RMTL--EAIRVTQSDRDLFKHLITEATNYVaadymrhaNERRELSERALELRRELFGARRQLAEEQYRLVEmarELEELS 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 736 AEEGSLAAAKRALEARLEEAQRGL------SRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELe 809
Cdd:COG3096 320 ARESDLEQDYQAASDHLNLVQTALrqqekiERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQL- 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 810 qigEDSKQALHQLQSQLEDYKEkSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELL 889
Cdd:COG3096 399 ---ADYQQALDVQQTRAIQYQQ-AVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQF 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 890 AQRLQGLE---------------QEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTD---RINRSRDQVDQ 951
Cdd:COG3096 475 EKAYELVCkiageversqawqtaRELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEfcqRIGQQLDAAEE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 952 LRTELMQERSARQDLEcdkISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERLQAEdREKTVLQSTNrklerr 1031
Cdd:COG3096 555 LEELLAELEAQLEELE---EQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERL-REQSGEALAD------ 624
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 229553905 1032 vkelSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERL 1074
Cdd:COG3096 625 ----SQEVTAAMQQLLEREREATVERDELAARKQALESQIERL 663
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
778-1104 |
1.47e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 778 KQREALRRGKAELEEQKRLLDRTVERLNKELeqigedskQALHQLQSQLEDYKEKSRR---EVADAQRQAKEWASEAEKs 854
Cdd:TIGR04523 166 KQKEELENELNLLEKEKLNIQKNIDKIKNKL--------LKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEK- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 855 sgglsrLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMEldEERNT 934
Cdd:TIGR04523 237 ------KQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ--KEQDW 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 935 VELLTDRINRSRDQVDQLRTELMQERSarqdlecdKISlerqnkDLKGRLASLEgfqkpsASLSQLESQNRELQERLQAE 1014
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNK--------IIS------QLNEQISQLK------KELTNSESENSEKQRELEEK 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1015 DREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKD---QLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEA 1091
Cdd:TIGR04523 369 QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ 448
|
330
....*....|...
gi 229553905 1092 NEQLQARIRALEK 1104
Cdd:TIGR04523 449 DSVKELIIKNLDN 461
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
801-1105 |
1.77e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 801 VERLNKELEQIGEDSKQAlHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLD 880
Cdd:TIGR04523 98 INKLNSDLSKINSEIKND-KEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELN 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 881 TARLDKELLAQRLQGLEQE----------AEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVD 950
Cdd:TIGR04523 177 LLEKEKLNIQKNIDKIKNKllklelllsnLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 951 QLRTElmQERSARQdLECDKISLERQNKDLKgrlaSLE-GFQKPSASLSQLESQ-----NRELQERLQAEDREKTVLQST 1024
Cdd:TIGR04523 257 QLKDE--QNKIKKQ-LSEKQKELEQNNKKIK----ELEkQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQ 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1025 NRKLERRVKELSIQIDD-ERQHVNDQKDQLSL---------KVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQ 1094
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQlKKELTNSESENSEKqreleekqnEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ 409
|
330
....*....|.
gi 229553905 1095 LQARIRALEKD 1105
Cdd:TIGR04523 410 KDEQIKKLQQE 420
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
787-1105 |
3.32e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 787 KAELEEQKRLLDRT---VERLNKELEQIGEDSKQaLHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQD 863
Cdd:TIGR04523 130 EKQKKENKKNIDKFlteIKKKEKELEKLNNKYND-LKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 864 ETQRLRQtlqasqadldtarLDKEL--LAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDR 941
Cdd:TIGR04523 209 KIQKNKS-------------LESQIseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 942 INRSRDQVDQLRTELMQERSARQDLECDKIslERQNKDLKGRLASLEG-FQKPSASLSQLESQNRELQERLQAEDREKTV 1020
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLKSEISDLNNQKE--QDWNKELKSELKNQEKkLEEIQNQISQNNKIISQLNEQISQLKKELTN 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1021 LQSTNRKLERRVKELSIQIDD---ERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRE---LEEQHE---- 1090
Cdd:TIGR04523 354 SESENSEKQRELEEKQNEIEKlkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEkelLEKEIErlke 433
|
330
....*....|....*
gi 229553905 1091 ANEQLQARIRALEKD 1105
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQ 448
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
353-821 |
4.44e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 4.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 353 VEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEEclrlqelLERQKGETRQSGTELQNLRLLLDQAGRVRSELETQVME 432
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKE-------AEEKEEEYAELQEELEELEEELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 433 LQDQLKQGPVPAKeglmkdlletRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQCQRDTEQL 512
Cdd:COG4717 121 LEKLLQLLPLYQE----------LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLAT 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 513 RKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELGEKMEA 592
Cdd:COG4717 191 EEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 593 LQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQqnLQLQKKTQQLSQdcAEATKARGARMAAEAEAALLVQRRTAVE 672
Cdd:COG4717 271 LILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE--LQALPALEELEE--EELEELLAALGLPPDLSPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 673 TTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEvEKQRLEEALSEAQAEEGSLAAAKRALEARL 752
Cdd:COG4717 347 EELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEAL 425
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229553905 753 EEAQrglsrMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLL--DRTVERLNKELEQIGEDSKQALHQ 821
Cdd:COG4717 426 DEEE-----LEEELEELEEELEELEEELEELREELAELEAELEQLeeDGELAELLQELEELKAELRELAEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
666-884 |
4.77e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 4.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 666 QRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAA- 744
Cdd:COG4942 34 QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAl 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 745 ---KRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIgEDSKQALHQ 821
Cdd:COG4942 114 yrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL-EEERAALEA 192
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 229553905 822 LQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARL 884
Cdd:COG4942 193 LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
666-886 |
5.94e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 666 QRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAK 745
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 746 RALEARLEEAQRGLSRMGQE------------------QQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKE 807
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplalllspedfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 229553905 808 LEQIgEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEkssgglsRLQDETQRLRQTLQASQADLDTARLDK 886
Cdd:COG4942 180 LAEL-EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-------ELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
693-988 |
6.03e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.19 E-value: 6.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 693 EQQLKETRGLAEGGEAAEARLRDKLQRLevekQRLEEALSE------AQAEEGSLAAAKRALEARLEEAQRGLSRM-GQE 765
Cdd:COG3096 784 EKRLEELRAERDELAEQYAKASFDVQKL----QRLHQAFSQfvgghlAVAFAPDPEAELAALRQRRSELERELAQHrAQE 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 766 QQALSRA-------------------LEEE--GKQREALRRGKAELEEQKRLLDRTVERLnKELEQI----------GED 814
Cdd:COG3096 860 QQLRQQLdqlkeqlqllnkllpqanlLADEtlADRLEELREELDAAQEAQAFIQQHGKAL-AQLEPLvavlqsdpeqFEQ 938
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 815 SKQALHQLQSQLEDYKEK--SRREVAdAQRQAKEWaseaEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQR 892
Cdd:COG3096 939 LQADYLQAKEQQRRLKQQifALSEVV-QRRPHFSY----EDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQ 1013
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 893 LQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDeerntvellTDRINRSRDQVDQLRTELMQERSARQDLECDKIS 972
Cdd:COG3096 1014 YSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQAD---------AEAEERARIRRDELHEELSQNRSRRSQLEKQLTR 1084
|
330
....*....|....*.
gi 229553905 973 LERQNKDLKGRLASLE 988
Cdd:COG3096 1085 CEAEMDSLQKRLRKAE 1100
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
896-1103 |
6.73e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.48 E-value: 6.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 896 LEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDE--ERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISL 973
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 974 ERQNKDLKGRLASL---EGFQKPSASLSQLESQNRELQERLQAEDREktvLQSTNRKLERRVKELSIQIDDERQHVNDQK 1050
Cdd:COG3206 246 RAQLGSGPDALPELlqsPVIQQLRAQLAELEAELAELSARYTPNHPD---VIALRAQIAALRAQLQQEAQRILASLEAEL 322
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 229553905 1051 DQLSLKVKALKRQVDEAEEEIERLDGLRKKA---QRELEEQHEANEQLQARIRALE 1103
Cdd:COG3206 323 EALQAREASLQAQLAQLEARLAELPELEAELrrlEREVEVARELYESLLQRLEEAR 378
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
502-734 |
7.08e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 7.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 502 RQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDE 581
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 582 MEEELGEKMEALQRELGQARAGAGGSRQ--VEELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARgarmaaea 659
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER-------- 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 229553905 660 eaALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEA 734
Cdd:COG4942 174 --AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
863-1104 |
7.76e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 7.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 863 DETQRLRQTLQASQADLDTARLDKELLaQRLQGLEQEAEKKRRSQDDrtrqvksLEEKVSRLEMELDEERntVELLTDRI 942
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELL-EPIRELAERYAAARERLAE-------LEYLRAALRLWFAQRR--LELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 943 NRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKG-RLASLEgfqkpsaslSQLESQNRELQERLQAEDRektvl 1021
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdRLEQLE---------REIERLERELEERERRRAR----- 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1022 qstnrkLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEqheaneqLQARIRA 1101
Cdd:COG4913 364 ------LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE-------LEAEIAS 430
|
...
gi 229553905 1102 LEK 1104
Cdd:COG4913 431 LER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
351-811 |
8.36e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 8.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 351 QKVEELQRKLDEEVKKRQVLEPSRLELEQ------QLEEKAEECLRLQELLERQKgETRQSGTELQNLRLLLDQAGRVRS 424
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEEleeeleELEAELEELREELEKLEKLL-QLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 425 ELETQVMELQDQLKQGPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRErELTALKGALKEEVASRDQEVEHVRQQ 504
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE-ELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 505 CQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTM-----------FQKNKEELRAAKQELL 573
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLvlgllallfllLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 574 QLRMEKDEMEEELGEKMEALqrelgqaraGAGGSRQVEELRKLqgeAERVRELEQQNLQLQKKTQQLSQDCAEATKARGA 653
Cdd:COG4717 309 ALPALEELEEEELEELLAAL---------GLPPDLSPEELLEL---LDRIEELQELLREAEELEEELQLEELEQEIAALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 654 RMAAEAEAALLVQRRTAVEtTLQETQGENDEFRRRilgLEQQLKETRGLAEGGEaaEARLRDKLQRLEVEKQRLEEALSE 733
Cdd:COG4717 377 AEAGVEDEEELRAALEQAE-EYQELKEELEELEEQ---LEELLGELEELLEALD--EEELEEELEELEEELEELEEELEE 450
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 229553905 734 AQAEEGSLAAAKRALearleEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEE-QKRLLDRTVERLNKELEQI 811
Cdd:COG4717 451 LREELAELEAELEQL-----EEDGELAELLQELEELKAELRELAEEWAALKLALELLEEaREEYREERLPPVLERASEY 524
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
857-1121 |
8.40e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 8.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 857 GLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTR------------------QVKSLE 918
Cdd:TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyegyellkekealerQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 919 EKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQ--------DLECDKISLERQNKDLKGRLASLEG- 989
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQlrvkekigELEAEIASLERSIAEKERELEDAEEr 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 990 FQKPSASLSQLESQNRELQERLQAEDREKTVLQS--TNRKLERRVKELSIQ-IDDERQHVNDQKDQLSLKVKALKRQVDE 1066
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEeyAELKEELEDLRAELEeVDKEFAETRDELKDYREKLEKLKREINE 403
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 229553905 1067 AEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKDSWRKAAR-SAAESSLQQ 1121
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEiKKQEWKLEQ 459
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
705-1104 |
1.25e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.81 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 705 GGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEegkQREALR 784
Cdd:pfam15921 72 GKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQED---LRNQLQ 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 785 RGKAELEEQKRLLDRTVERLNKELEQIGE---DSKQALHQLQSQLEDYKEKSRREVADAQRQAK-EWASEAEKSSGGLSR 860
Cdd:pfam15921 149 NTVHELEAAKCLKEDMLEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 861 LQDETQRLRQTLQASQADLDTARLDK----ELLAQ----RLQGLEQEAEKKRRSQDDRTRQVKSLEEKV-SRLEMELDEE 931
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKSESqnkiELLLQqhqdRIEQLISEHEVEITGLTEKASSARSQANSIqSQLEIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 932 RNTVELLTDRINRSRDQVDQLRTELmqeRSARQDLEcDKIS-LERQ----NKDLKGRLASLEGFQKPSASLsqlESQNRE 1006
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSEL---REAKRMYE-DKIEeLEKQlvlaNSELTEARTERDQFSQESGNL---DDQLQK 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1007 LQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELE 1086
Cdd:pfam15921 382 LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLE 461
|
410
....*....|....*...
gi 229553905 1087 EQHEANEQLQARIRALEK 1104
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRK 479
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
761-904 |
2.12e-06 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 52.07 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 761 RMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLdrtvERLNKELEQIGEDSKQALHQLQSQLEDYKEKSRREVADA 840
Cdd:COG1193 494 RLGLPEEIIERARELLGEESIDVEKLIEELERERREL----EEEREEAERLREELEKLREELEEKLEELEEEKEEILEKA 569
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 229553905 841 QRQAKEWASEAEKssgglsrlqdETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKR 904
Cdd:COG1193 570 REEAEEILREARK----------EAEELIRELREAQAEEEELKEARKKLEELKQELEEKLEKPK 623
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
616-857 |
2.51e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 616 LQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAAllvQRRTAVETTLQETQGENDEFRRRILGLEQQ 695
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 696 LKETRGLAEGGEAAEARLRDKLQRLEvEKQRLEEALSEAQAEEG--SLAAAKRALEARLEEAQrglsRMGQEQQALSRAL 773
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLG-RQPPLALLLSPEDFLDAvrRLQYLKYLAPARREQAE----ELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 774 EEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIgedsKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEK 853
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARL----EKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
....
gi 229553905 854 SSGG 857
Cdd:COG4942 243 TPAA 246
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
466-796 |
2.79e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 466 KQRVEEQLRQRERElTALKGALKEEVASRDQEV----EHVRQQCQRDTEQLRKSIQDASQDqaaLEAERQKMSALVRGLQ 541
Cdd:pfam17380 302 RQEKEEKAREVERR-RKLEEAEKARQAEMDRQAaiyaEQERMAMERERELERIRQEERKRE---LERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 542 RELEETSEETghwQTMFQKNKEELRAAKQELLQlrmekdemEEELGEKMEALQRELGQARAGAGGSRQvEELRKLqgEAE 621
Cdd:pfam17380 378 RELERLQMER---QQKNERVRQELEAARKVKIL--------EEERQRKIQQQKVEMEQIRAEQEEARQ-REVRRL--EEE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 622 RVRELE---QQNLQLQKKTQQLSQDCAEAtkargarmaaeaeaallvQRRTAVETTLQETQGENDEFRRRIlgLEQQLKE 698
Cdd:pfam17380 444 RAREMErvrLEEQERQQQVERLRQQEEER------------------KRKKLELEKEKRDRKRAEEQRRKI--LEKELEE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 699 TRglaeggeaaEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRaLEEEGK 778
Cdd:pfam17380 504 RK---------QAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSR-LEAMER 573
|
330
....*....|....*...
gi 229553905 779 QREALRRGKAELEEQKRL 796
Cdd:pfam17380 574 EREMMRQIVESEKARAEY 591
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
567-818 |
2.94e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 567 AAKQELLQLRMEKDEMEEELGEKMEALQRELGQARAGAGGSRQVEelRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAE 646
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE--RRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 647 ATKARGARMAAEAEAALLVQRRTAVETTLQETQGEN-DEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQ 725
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 726 RLEEALSEAQAEEGSLAAAKralearleeaqrglsrmgQEQQALSRALEeegKQREALRRGKAELEEQKRLLDRTVERLN 805
Cdd:COG4942 175 ELEALLAELEEERAALEALK------------------AERQKLLARLE---KELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|...
gi 229553905 806 KELEQIGEDSKQA 818
Cdd:COG4942 234 AEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
563-795 |
4.40e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 4.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 563 EELRAAKQELLQLRMEKDEMEEELGE---KMEALQRELGQARagaggsrqveelRKLQGEAERVRELEQQNLQLQKKTQQ 639
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAAlkkEEKALLKQLAALE------------RRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 640 LSQDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGEN-DEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQ 718
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 719 RLEVEKQRLEEALSEAQAEegslaaaKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKR 795
Cdd:COG4942 168 ELEAERAELEALLAELEEE-------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
727-1103 |
6.01e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 50.28 E-value: 6.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 727 LEEALSEAQAEEGSLAAAKRA--LEARLEEAQRGLSRMGQEQQALSRALEEEgkqREALRRGKAELEEQKRLLDRTVERL 804
Cdd:pfam07888 9 LEEESHGEEGGTDMLLVVPRAelLQNRLEECLQERAELLQAQEAANRQREKE---KERYKRDREQWERQRRELESRVAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 805 NKELEQIGED-------------SKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQT 871
Cdd:pfam07888 86 KEELRQSREKheeleekykelsaSSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 872 LQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRL----------EMELDEERNTVELLTDR 941
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLtqklttahrkEAENEALLEELRSLQER 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 942 INRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASlegfqkpsASLSQLESQNRELQER---LQAEDREK 1018
Cdd:pfam07888 246 LNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLAD--------ASLALREGRARWAQERetlQQSAEADK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1019 TVLQSTNRKLERRVKELSiqidDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQAR 1098
Cdd:pfam07888 318 DRIEKLSAELQRLEERLQ----EERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEY 393
|
....*
gi 229553905 1099 IRALE 1103
Cdd:pfam07888 394 IRQLE 398
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
410-842 |
8.52e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 8.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 410 QNLRLLLDQAGRVRSELETQVMELQDQLKQgpVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGA--- 486
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKE--AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpl 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 487 ------LKEEVASRDQEVEHVRQQcQRDTEQLRKSIQDASQDQAALEAERQKMSALVR-GLQRELEETSEETGHWQTMFQ 559
Cdd:COG4717 131 yqeleaLEAELAELPERLEELEER-LEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 560 KNKEELRAAKQELLQLRMEKDEMEEELGEKMEALQRELGQARAGAGGSRQVEELRKLQGEAERVRELEQQNLQLQKKTQQ 639
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 640 LSQDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRdkLQR 719
Cdd:COG4717 290 FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ--LEE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 720 LEVEKQRLEEALSEAQAEE----GSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEG--KQREALRRGKAELEEQ 793
Cdd:COG4717 368 LEQEIAALLAEAGVEDEEElraaLEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEEleEELEELEEELEELEEE 447
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 229553905 794 KRLLDRTVERLNKELEQIGEDskQALHQLQSQLEDYKEKSRREVADAQR 842
Cdd:COG4717 448 LEELREELAELEAELEQLEED--GELAELLQELEELKAELRELAEEWAA 494
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
359-1096 |
8.90e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 8.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 359 KLDEEVKKRQVLEPSRLELEQQLEEKAEECL-----RLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELETQVMEL 433
Cdd:TIGR00606 266 KLDNEIKALKSRKKQMEKDNSELELKMEKVFqgtdeQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTEL 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 434 QDQLKQGPVPAK----EGLMKDLLETRELLEEVLEGKQRVEEQLRQrereltaLKGALKEEVASRDQEVEHVRQQCQRDT 509
Cdd:TIGR00606 346 LVEQGRLQLQADrhqeHIRARDSLIQSLATRLELDGFERGPFSERQ-------IKNFHTLVIERQEDEAKTAAQLCADLQ 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 510 EQLRKSiqdasqdQAALEAERQKMSALVRGLQRELEETSEETGHWQTMfQKNKEELRAAKQELLQLRMEKDEMEEELGEK 589
Cdd:TIGR00606 419 SKERLK-------QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFV-IKELQQLEGSSDRILELDQELRKAERELSKA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 590 MEALQRELGQARAGAGGSRQVEELRKLQGEAErvrELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAALLVQR-- 667
Cdd:TIGR00606 491 EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQ---EMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlg 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 668 ----RTAVETTLQETQGENDEFRRR-------ILGLEQQLKETRGLAEGGEAAEARLRDKL------QRLEVEKQRLEEA 730
Cdd:TIGR00606 568 yfpnKKQLEDWLHSKSKEINQTRDRlaklnkeLASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEE 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 731 LSEAQAEEGSLAAAKRALEARLEEA---QRGLSRMGQEQQALSRALEEEGKQREA-LRRGKAELEEQKRLLDRtVERLNK 806
Cdd:TIGR00606 648 IEKSSKQRAMLAGATAVYSQFITQLtdeNQSCCPVCQRVFQTEAELQEFISDLQSkLRLAPDKLKSTESELKK-KEKRRD 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 807 ELEQIGEDSKQALHQLQSQLEDYKEKSRREVADAQRQaKEWASEAEKSSGGLS---RLQDETQRLRQTLQASQADLDTAR 883
Cdd:TIGR00606 727 EMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRL-KNDIEEQETLLGTIMpeeESAKVCLTDVTIMERFQMELKDVE 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 884 LDKELLAQRLQGLE-----QEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQ 958
Cdd:TIGR00606 806 RKIAQQAAKLQGSDldrtvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 959 ERSARQDLECDKISLERQNKDLKGRLASLEGFqkpsaslsqLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQ 1038
Cdd:TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETF---------LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGY 956
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 229553905 1039 IDDERQHVNDQKD----QLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQ 1096
Cdd:TIGR00606 957 MKDIENKIQDGKDdylkQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQ 1018
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
373-608 |
9.14e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 9.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 373 SRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELETQVMELQDQLKQGpvpakeglmkdL 452
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-----------E 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 453 LETRELLEEVLEGKQRVEEQLR------QRERELTALKGALKEEVASRDQEVEHVRQQCQRDTEQLRKSIQDASQDQAAL 526
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRalyrlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 527 EAERQKMSALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELgEKMEALQRELGQARAGAGG 606
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI-ARLEAEAAAAAERTPAAGF 248
|
..
gi 229553905 607 SR 608
Cdd:COG4942 249 AA 250
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
902-1131 |
9.54e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 9.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 902 KKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTElmqersARQDLECDKISLERQNKDLK 981
Cdd:TIGR02169 153 VERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE------REKAERYQALLKEKREYEGY 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 982 GRLASLEGFQKP-SASLSQLESQNRELQER-LQAEDREKTvLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKA 1059
Cdd:TIGR02169 227 ELLKEKEALERQkEAIERQLASLEEELEKLtEEISELEKR-LEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1060 LKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIR--ALEKDSW------RKAARSAAESSLQQEGLSSDEEFD 1131
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeeRKRRDKLteeyaeLKEELEDLRAELEEVDKEFAETRD 385
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
486-1083 |
9.85e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 9.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 486 ALKEEVASRDQEVEHVRQQCQRDTEQLRKSIQDaSQDQAALEAERQKmsalVRGLQRELEetSEETGHWQtmFQKNKEEL 565
Cdd:pfam12128 197 DVKSMIVAILEDDGVVPPKSRLNRQQVEHWIRD-IQAIAGIMKIRPE----FTKLQQEFN--TLESAELR--LSHLHFGY 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 566 RAAKQELLQLRMEKDEMEEELGEKMEALQRELGQARAGAGG--SRQVEELRKLQGEAERVRELEQQNLQLQKKTQQLSQD 643
Cdd:pfam12128 268 KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGelSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 644 CAEATKARGARMAAEAEAALLVQRRTAVETTLQEtQGENDEFRRRILGLEQQLKETRGLAEGGEAAEarlRDKLQRLEVE 723
Cdd:pfam12128 348 QLPSWQSELENLEERLKALTGKHQDVTAKYNRRR-SKIKEQNNRDIAGIKDKLAKIREARDRQLAVA---EDDLQALESE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 724 -KQRLEEALSEAQAEEGSLAAAKRALEARLEEAQ---RGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDR 799
Cdd:pfam12128 424 lREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATatpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQ 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 800 TVERLNKE---LEQIGEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQrLRQTLQASQ 876
Cdd:pfam12128 504 ASEALRQAsrrLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGS-VGGELNLYG 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 877 ADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEE-------RNTVELLTDRINRSRDQV 949
Cdd:pfam12128 583 VKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKAsreetfaRTALKNARLDLRRLFDEK 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 950 DQLRTELMQERSARQDLECDKI-SLERQNKDL-KGRLASLEGFQKPSASLSQLESQNRE--LQERLQAEDREKTVLQSTN 1025
Cdd:pfam12128 663 QSEKDKKNKALAERKDSANERLnSLEAQLKQLdKKHQAWLEEQKEQKREARTEKQAYWQvvEGALDAQLALLKAAIAARR 742
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 229553905 1026 RKLERRVKelsiQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQR 1083
Cdd:pfam12128 743 SGAKAELK----ALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLR 796
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
609-901 |
1.02e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 609 QVEELRKLQGEAERVRELEQQ-NLQLQKKTQQLSQDCAEATKARGARMAAEAEAA----LLVQRRTAVETTLQETQGEND 683
Cdd:pfam17380 295 KMEQERLRQEKEEKAREVERRrKLEEAEKARQAEMDRQAAIYAEQERMAMEREREleriRQEERKRELERIRQEEIAMEI 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 684 EFRRRI--LGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEgslaAAKRALEARLEEAQRGLSR 761
Cdd:pfam17380 375 SRMRELerLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEE----ARQREVRRLEEERAREMER 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 762 MGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQLEDY-KEKSRREVADA 840
Cdd:pfam17380 451 VRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLeKEMEERQKAIY 530
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229553905 841 QRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQaSQADLDTARLDKELLAQRLQGLEQEAE 901
Cdd:pfam17380 531 EEERRREAEEERRKQQEMEERRRIQEQMRKATE-ERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
381-753 |
1.43e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 381 LEEKAEECLR-LQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELETQVMELQDQLKQG--PVPAKEGLMKDLLETRE 457
Cdd:pfam07888 32 LQNRLEECLQeRAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSreKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 458 LLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQCQRDTEQLRKSIQDASQDQAAL---EAERQKMS 534
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLqqtEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 535 ALVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLrmekdemeEELGEKMEALQRELGQARAGAGGSRqvEELR 614
Cdd:pfam07888 192 KEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEN--------EALLEELRSLQERLNASERKVEGLG--EELS 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 615 KLQGEAERVR-ELEQQNLQLQKKTQQLSQdcaeatkargARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLE 693
Cdd:pfam07888 262 SMAAQRDRTQaELHQARLQAAQLTLQLAD----------ASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLE 331
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229553905 694 QQLKETRGLAEGGEAAEARLRD----KLQRLEVEKQRLEEALSEAQAEEGSLAAAK-------RALEARLE 753
Cdd:pfam07888 332 ERLQEERMEREKLEVELGREKDcnrvQLSESRRELQELKASLRVAQKEKEQLQAEKqelleyiRQLEQRLE 402
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
540-831 |
1.64e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 540 LQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEEELgeKMEALQRELGQARagaggsrqvEELRKLQGE 619
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI--DVASAEREIAELE---------AELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 620 AERVRELEQQNLQLQKKTQQLSQDCAEATKARGArmaaeaeaalLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKET 699
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGR----------LEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 700 RGLAEGGEAAEARLRDKLQRlevEKQRLEEALSEAQAE-EGSLAAAKRALEARLEEAQRGLSRMGqEQQALSRALEEEG- 777
Cdd:COG4913 754 RFAAALGDAVERELRENLEE---RIDALRARLNRAEEElERAMRAFNREWPAETADLDADLESLP-EYLALLDRLEEDGl 829
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 229553905 778 -----KQREALRRG--------KAELEEQKRLLDRTVERLNKELEQI--GEDSKQALHQLQSQLEDYKE 831
Cdd:COG4913 830 peyeeRFKELLNENsiefvadlLSKLRRAIREIKERIDPLNDSLKRIpfGPGRYLRLEARPRPDPEVRE 898
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
476-825 |
1.91e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.19 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 476 RERELTALKgALKEEVASRDQEVEHVRQQCQRDTEQLRK------SIQDASQDQAALEAERQKMSALVRGLQRELEETse 549
Cdd:PRK04863 784 REKRIEQLR-AEREELAERYATLSFDVQKLQRLHQAFSRfigshlAVAFEADPEAELRQLNRRRVELERALADHESQE-- 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 550 etghwqtmfQKNKEELRAAKQELLQLRMEKDEM----EEELGEKMEALQRELGQAR-AGAGGSRQVEELRKLQGEAERVR 624
Cdd:PRK04863 861 ---------QQQRSQLEQAKEGLSALNRLLPRLnllaDETLADRVEEIREQLDEAEeAKRFVQQHGNALAQLEPIVSVLQ 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 625 ELEQQNLQLQKKTQQLSQDCAEAtkARGARmaaeaEAALLVQRRTAVetTLQETQGendefrrrILGLEQQLKEtrglae 704
Cdd:PRK04863 932 SDPEQFEQLKQDYQQAQQTQRDA--KQQAF-----ALTEVVQRRAHF--SYEDAAE--------MLAKNSDLNE------ 988
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 705 ggeaaeaRLRDKLQRLEVEKQRLEEALSEAQAE-------EGSLAAAKRALEARLEEAQRGLSRMG------QEQQALSR 771
Cdd:PRK04863 989 -------KLRQRLEQAEQERTRAREQLRQAQAQlaqynqvLASLKSSYDAKRQMLQELKQELQDLGvpadsgAEERARAR 1061
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 229553905 772 ALEEEGKQREALRRgKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQ 825
Cdd:PRK04863 1062 RDELHARLSANRSR-RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
815-1104 |
2.83e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 48.20 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 815 SKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSgglSRLQDETQRLRQtlqasqadldtarldkellaqrLQ 894
Cdd:pfam05557 7 SKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRES---DRNQELQKRIRL----------------------LE 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 895 GLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINrsrDQVDQLRTELMQERSARQDLECDKISLE 974
Cdd:pfam05557 62 KREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLK---NELSELRRQIQRAELELQSTNSELEELQ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 975 RQNKDLKGRLASLE----GFQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLErRVKELSIQIDDERQHvNDQK 1050
Cdd:pfam05557 139 ERLDLLKAKASEAEqlrqNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELA-RIPELEKELERLREH-NKHL 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 229553905 1051 DQLSLKVKALKRQVDEAEEEIERLDGLR-KKAQRELEeqheaNEQLQARIRALEK 1104
Cdd:pfam05557 217 NENIENKLLLKEEVEDLKRKLEREEKYReEAATLELE-----KEKLEQELQSWVK 266
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
505-902 |
3.25e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 505 CQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEETGHWQT-MFQKNK--------EELRAAKQELLQL 575
Cdd:PRK04863 291 LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTaLRQQEKieryqadlEELEERLEEQNEV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 576 RMEKDEMEEELGEKMEALQRELGQARAGAGGSRQ---VEELRKLQgeaervrelEQQNLQLQKKTQQLSQDCAEATKARG 652
Cdd:PRK04863 371 VEEADEQQEENEARAEAAEEEVDELKSQLADYQQaldVQQTRAIQ---------YQQAVQALERAKQLCGLPDLTADNAE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 653 ARMAAEAEAALLV-QRRTAVETTLQETQGENDEFrrrilglEQQLKETRGLAEGGEAAEAR--LRDKLQRLEVEKQrlee 729
Cdd:PRK04863 442 DWLEEFQAKEQEAtEELLSLEQKLSVAQAAHSQF-------EQAYQLVRKIAGEVSRSEAWdvARELLRRLREQRH---- 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 730 alseaqaeegsLAAAKRALEARLEEAQRGLsrmgQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELE 809
Cdd:PRK04863 511 -----------LAEQLQQLRMRLSELEQRL----RQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 810 QIGEDskqalhqlQSQLEDYKEKSRREVADAQRQAKEWASEAEKssggLSRLQDET-------QRLRQTLQASQADLDTA 882
Cdd:PRK04863 576 EARER--------RMALRQQLEQLQARIQRLAARAPAWLAAQDA----LARLREQSgeefedsQDVTEYMQQLLEREREL 643
|
410 420
....*....|....*....|
gi 229553905 883 RLDKELLAQRLQGLEQEAEK 902
Cdd:PRK04863 644 TVERDELAARKQALDEEIER 663
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1012-1104 |
3.29e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.93 E-value: 3.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1012 QAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ---LSLKVKALKRQVDE---AEEEIERLDGLRKKAQREL 1085
Cdd:COG2433 402 EHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERierLERELSEARSEERReirKDREISRLDREIERLEREL 481
|
90
....*....|....*....
gi 229553905 1086 EEQHEANEQLQARIRALEK 1104
Cdd:COG2433 482 EEERERIEELKRKLERLKE 500
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
922-1122 |
3.60e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 922 SRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDlecdkISLERQNKDLKGRLASLEG-FQKPSASLSQL 1000
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGL-----VDLSEEAKLLLQQLSELESqLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1001 ESQNRELQERLQAEDREKTVLQS--TNRKLERRVKELSIQIDDERQHVNDQkdqlSLKVKALKRQVDEAEEEIERLdglr 1078
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPN----HPDVIALRAQIAALRAQLQQE---- 310
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 229553905 1079 kkAQRELEEQHEANEQLQARIRALEKDSWRKAARSAAESSLQQE 1122
Cdd:COG3206 311 --AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE 352
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
827-944 |
4.36e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 4.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 827 EDYKEKSRREVADAQRQAKEWASEAEkssgglsRLQDETQRLRQTLqasqadldtARLDKELlaQRLQGLEQEAEKKRRS 906
Cdd:COG2433 398 EREKEHEERELTEEEEEIRRLEEQVE-------RLEAEVEELEAEL---------EEKDERI--ERLERELSEARSEERR 459
|
90 100 110
....*....|....*....|....*....|....*...
gi 229553905 907 QDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINR 944
Cdd:COG2433 460 EIRKDREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
823-1145 |
4.84e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.20 E-value: 4.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 823 QSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEK 902
Cdd:COG4372 12 RLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 903 KRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKG 982
Cdd:COG4372 92 AQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQ 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 983 RLASLEGFQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKR 1062
Cdd:COG4372 172 ELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1063 QVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKDSWRKAARSAAESSLQQEGLSSDEEFDGVYNPNSIASL 1142
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
...
gi 229553905 1143 LTE 1145
Cdd:COG4372 332 LAI 334
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
450-1099 |
5.59e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 5.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 450 KDLLETRELLEEVLEGKQRVEEQLRQRERELTALK--GALKEEVASRDQEVEHVRQQCQRDTE--------QLRKSIQDA 519
Cdd:TIGR00618 166 KELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTlrSQLLTLCTPCMPDTYHERKQVLEKELkhlrealqQTQQSHAYL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 520 SQDQAALEAERQKMSALVRGLQRELEETSEETGHWQTM----FQKNKEELRAAKQELLQLRMEKDEMEEELGEKMEALQR 595
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQerinRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 596 ELGQARAGAGGSRQVEELRKL-----QGEAERVRELEQQNLQLQKKTQQLSqdcaeatkargarmaAEAEAALLVQRRTA 670
Cdd:TIGR00618 326 LLMKRAAHVKQQSSIEEQRRLlqtlhSQEIHIRDAHEVATSIREISCQQHT---------------LTQHIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 671 VETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEA 750
Cdd:TIGR00618 391 LTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 751 RLEeaqrglsrmgQEQQALSRALEEEGKQREALRRgKAELEEQKRLLDRTVERLNKELEQIGEdsKQALHQLQSQLEDYK 830
Cdd:TIGR00618 471 REQ----------QLQTKEQIHLQETRKKAVVLAR-LLELQEEPCPLCGSCIHPNPARQDIDN--PGPLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 831 EKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTAR--------LDKELLAQRLQGLEQEAEK 902
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQnitvrlqdLTEKLSEAEDMLACEQHAL 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 903 KRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKG 982
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 983 RLASLEgfQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKR 1062
Cdd:TIGR00618 698 MLAQCQ--TLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQ 775
|
650 660 670
....*....|....*....|....*....|....*..
gi 229553905 1063 QVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARI 1099
Cdd:TIGR00618 776 TGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEI 812
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
670-979 |
7.07e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.87 E-value: 7.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 670 AVETTLQETQGENDEFRRRILG----LEQQLKETRG-LAEGGEAAEARLRDKLQRLEVEKQRLE-EALSEAQAEEGSLAA 743
Cdd:COG5185 250 QTSDKLEKLVEQNTDLRLEKLGenaeSSKRLNENANnLIKQFENTKEKIAEYTKSIDIKKATESlEEQLAAAEAEQELEE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 744 AKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRgKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQ 823
Cdd:COG5185 330 SKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVE-LSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEIL 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 824 SQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQadldtarldKELLAQRLQGLEQEAEKK 903
Cdd:COG5185 409 ATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEES---------QSRLEEAYDEINRSVRSK 479
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 229553905 904 RRsqddrtrqvkSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKD 979
Cdd:COG5185 480 KE----------DLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALENLI 545
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
355-1087 |
7.36e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 7.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 355 ELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSELETQVMElQ 434
Cdd:pfam05483 100 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYE-R 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 435 DQLKQGPVPAKEGLMKDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRDQEVEHVRQQCQRDTEQLR- 513
Cdd:pfam05483 179 EETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKd 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 514 -KSIQDASQDQAALEAERQKMSA--------LVRGLQRELEETSEETGHWQTMFQKNKEELRAAKQELLQLRMEKDEMEE 584
Cdd:pfam05483 259 lTFLLEESRDKANQLEEKTKLQDenlkelieKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQME 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 585 ELGEKMEALQRELGQARAGAGgsrQVEELrkLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGARmaaeaeaall 664
Cdd:pfam05483 339 ELNKAKAAHSFVVTEFEATTC---SLEEL--LRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNK---------- 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 665 vqrrtavETTLQETqgendefrRRILGLEQQL----KETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGS 740
Cdd:pfam05483 404 -------EVELEEL--------KKILAEDEKLldekKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEH 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 741 LAAAKRALEARLEEAQRGLSRMGQEQQALSraLEEEGKQREAlRRGKAELEEQKRLLDRTVERLNKELEQIgedskQALH 820
Cdd:pfam05483 469 YLKEVEDLKTELEKEKLKNIELTAHCDKLL--LENKELTQEA-SDMTLELKKHQEDIINCKKQEERMLKQI-----ENLE 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 821 QLQSQLEDYKEKSRREVadaQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEA 900
Cdd:pfam05483 541 EKEMNLRDELESVREEF---IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQEN 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 901 EKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDrinrsrdqvdqlrtelmqerSARQDLECDKISLERQnkdl 980
Cdd:pfam05483 618 KALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIID--------------------NYQKEIEDKKISEEKL---- 673
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 981 kgrlasLEGFQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRK-----LERRVKELSIQIDDErQHVNDQKDQLSL 1055
Cdd:pfam05483 674 ------LEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHqydkiIEERDSELGLYKNKE-QEQSSAKAALEI 746
|
730 740 750
....*....|....*....|....*....|..
gi 229553905 1056 KVKALKRQVDEAEEEIERLDGLRKKAQRELEE 1087
Cdd:pfam05483 747 ELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
769-1107 |
1.01e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.05 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 769 LSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQsQLEDYKEKSRREVADAQRQAKEWA 848
Cdd:COG4372 8 VGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELE-QLEEELEQARSELEQLEEELEELN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 849 SEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMEL 928
Cdd:COG4372 87 EQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEEL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 929 DEERNTVELLTDRINRSRDQvdqlrtelMQERSARQDLECDKISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQ 1008
Cdd:COG4372 167 AALEQELQALSEAEAEQALD--------ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSAL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1009 ERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQ 1088
Cdd:COG4372 239 LDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALL 318
|
330
....*....|....*....
gi 229553905 1089 HEANEQLQARIRALEKDSW 1107
Cdd:COG4372 319 AALLELAKKLELALAILLA 337
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
134-247 |
1.11e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 46.61 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 134 GPAPLGPGHRSTSLLELGPPGLGAGSAIDTAPLSSVDTLIHKfdrhQGGQARGRTGRRmraLPAEQRKRSQSLDSRHLRD 213
Cdd:PTZ00449 518 GLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGK----KPGPAKEHKPSK---IPTLSKKPEFPKDPKHPKD 590
|
90 100 110
....*....|....*....|....*....|....
gi 229553905 214 PPEDRRSPIPwAPPSRPGSAGSSKQPAPKPIPTS 247
Cdd:PTZ00449 591 PEEPKKPKRP-RSAQRPTRPKSPKLPELLDIPKS 623
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
666-888 |
1.32e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 666 QRRTAVETTLQETQGENDEFRRRILGLEQQLKETRgLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAK 745
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFR-QKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 746 RALEARLEEAQR-----GLSRMGQEQQALSRALEEE----GKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSK 816
Cdd:COG3206 247 AQLGSGPDALPEllqspVIQQLRAQLAELEAELAELsaryTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQ 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 229553905 817 QALHQLQSQLEDYKEKSRREVADAQRqakewaseaekssggLSRLQDETQRLRQTLQASQADLDTARLDKEL 888
Cdd:COG3206 327 AREASLQAQLAQLEARLAELPELEAE---------------LRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
333-551 |
1.35e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 333 LVMTTGSAKVLAGQGELAQKVEELQRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNL 412
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 413 RLLLDQAgrvRSELETQVMELQDQL----KQGPVPAKEGL---------------MKDLLETRELLEEVLEGKQRVEEQL 473
Cdd:COG4942 89 EKEIAEL---RAELEAQKEELAELLralyRLGRQPPLALLlspedfldavrrlqyLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 229553905 474 RQRERELTALKGALKEEVASRDQEVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEET 551
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
341-1099 |
1.37e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 341 KVLAGQGELAQKVEEL---QRKLDEEVKKRQVLEPSRLELEQQLEEKAEECLRLQELLERQKGETRQSGtELQNLRLLLD 417
Cdd:PRK04863 287 EALELRRELYTSRRQLaaeQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQA-DLEELEERLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 418 QAGRVRSELETQVMELQDQLKQGPVPAKE--GLMKDLLETRELLEEVLEGKQrveeQLRQRERELTALKGALKEEVASRD 495
Cdd:PRK04863 366 EQNEVVEEADEQQEENEARAEAAEEEVDElkSQLADYQQALDVQQTRAIQYQ----QAVQALERAKQLCGLPDLTADNAE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 496 QEVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSaLVRGLQRELEEtsEETGHWQTMFQKNKEELRAAKQELLQL 575
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ-LVRKIAGEVSR--SEAWDVARELLRRLREQRHLAEQLQQL 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 576 RMEKDEMEEELGE--KMEALQRELGQaRAGAGGSRQvEELRKLQGEAE--------RVRELEQQNLQLQKKTQQLSQDCA 645
Cdd:PRK04863 519 RMRLSELEQRLRQqqRAERLLAEFCK-RLGKNLDDE-DELEQLQEELEarleslseSVSEARERRMALRQQLEQLQARIQ 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 646 EATKARGARMAAEaeaallvqrrtAVETTLQETQGENDEFRRRILGLEQQLKETrglaeggeaaEARLRDKLQRLEVEKQ 725
Cdd:PRK04863 597 RLAARAPAWLAAQ-----------DALARLREQSGEEFEDSQDVTEYMQQLLER----------ERELTVERDELAARKQ 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 726 RLEEALSEAQAEEGSLAAAKRALEAR--------------LEEAQRGLSRMGQEQQA-----LSRALEEEGKQRE----- 781
Cdd:PRK04863 656 ALDEEIERLSQPGGSEDPRLNALAERfggvllseiyddvsLEDAPYFSALYGPARHAivvpdLSDAAEQLAGLEDcpedl 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 782 --------ALRRGKAELEEQKR-LLDRTVERLNK-----ELEQIGEDSKQA-LHQLQSQLEDYKE---KSRREVADAQRQ 843
Cdd:PRK04863 736 yliegdpdSFDDSVFSVEELEKaVVVKIADRQWRysrfpEVPLFGRAAREKrIEQLRAEREELAEryaTLSFDVQKLQRL 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 844 --------------AKEWASEAE---------KSSGGLSRLQDETQRLRQTLQASQADLDTAR--------LDKELLAQR 892
Cdd:PRK04863 816 hqafsrfigshlavAFEADPEAElrqlnrrrvELERALADHESQEQQQRSQLEQAKEGLSALNrllprlnlLADETLADR 895
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 893 LQGLEQE---AEKKRRSQDDRTRQVKSLEEKVSRL---EMELDEERNTVELLTDRINRSRDQVDQLrTELMQERSA---- 962
Cdd:PRK04863 896 VEEIREQldeAEEAKRFVQQHGNALAQLEPIVSVLqsdPEQFEQLKQDYQQAQQTQRDAKQQAFAL-TEVVQRRAHfsye 974
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 963 -RQDLECDKISLerqNKDLKGRLASLEGFQKPS-ASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQID 1040
Cdd:PRK04863 975 dAAEMLAKNSDL---NEKLRQRLEQAEQERTRArEQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPAD 1051
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 1041 DE-----RQHVNDQKDQLS---LKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARI 1099
Cdd:PRK04863 1052 SGaeeraRARRDELHARLSanrSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGW 1118
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
721-1075 |
1.73e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 45.62 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 721 EVEKQrLEEAlsEAQAEEGSLAAAKRAL---EARLEEAQrglSRMGQEQQALSRALEEEGKQREALRRGKAELEE-QKRL 796
Cdd:pfam06160 64 DIEEL-LFEA--EELNDKYRFKKAKKALdeiEELLDDIE---EDIKQILEELDELLESEEKNREEVEELKDKYRElRKTL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 797 LDR------TVERLNKELEQI----------------------GEDSKQALHQLQSQLED---YKEKSRREVADAQRQAK 845
Cdd:pfam06160 138 LANrfsygpAIDELEKQLAEIeeefsqfeeltesgdylearevLEKLEEETDALEELMEDippLYEELKTELPDQLEELK 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 846 EWASEAEKSSGGLSRLQ--DETQRLRQTLQASQADLDTARLDK-----ELLAQRLQGL----------EQEAEKKRRSQD 908
Cdd:pfam06160 218 EGYREMEEEGYALEHLNvdKEIQQLEEQLEENLALLENLELDEaeealEEIEERIDQLydllekevdaKKYVEKNLPEIE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 909 DRTRQVKS----LEEKVSRLEM--ELDE-ERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLK 981
Cdd:pfam06160 298 DYLEHAEEqnkeLKEELERVQQsyTLNEnELERVRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIE 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 982 GRLASLEGfqkpsaSLSQLESQNRELQERLQaedREKTVLQSTNRKLERR--------VKELSIQIDDERQHVNDQKDQL 1053
Cdd:pfam06160 378 EEQEEFKE------SLQSLRKDELEAREKLD---EFKLELREIKRLVEKSnlpglpesYLDYFFDVSDEIEDLADELNEV 448
|
410 420
....*....|....*....|..
gi 229553905 1054 SLKVKALKRQVDEAEEEIERLD 1075
Cdd:pfam06160 449 PLNMDEVNRLLDEAQDDVDTLY 470
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
707-1009 |
1.86e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.66 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 707 EAAEARLRDKLQRLEveKQRLEEALSEAQAEE--GSLAAAKRAL----EARLEEAQRgLSRMGQEQQALSRALEE-EGKQ 779
Cdd:PLN02939 103 QRDEAIAAIDNEQQT--NSKDGEQLSDFQLEDlvGMIQNAEKNIlllnQARLQALED-LEKILTEKEALQGKINIlEMRL 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 780 REALRRGKAELEEQKR--LLDRTVERLNKELEQIGEDSKQALHQLQSQLEDYKEKSRREVADAQrQAKEWASEAEKSSGG 857
Cdd:PLN02939 180 SETDARIKLAAQEKIHveILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQ-FLKAELIEVAETEER 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 858 LSRLQDETQRLRQTLQASQADLDTARLDKELLAqrlqgleqeaekkrrsqddrTRQVKSLEEKVSRLEMELDEERNTVE- 936
Cdd:PLN02939 259 VFKLEKERSLLDASLRELESKFIVAQEDVSKLS--------------------PLQYDCWWEKVENLQDLLDRATNQVEk 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 937 --LLTDRINRSRDQVDQLRTELmqERSARQDLECDKISLERQN-KDLKGRLA---------------SLEGFQKPSASLS 998
Cdd:PLN02939 319 aaLVLDQNQDLRDKVDKLEASL--KEANVSKFSSYKVELLQQKlKLLEERLQasdheihsyiqlyqeSIKEFQDTLSKLK 396
|
330
....*....|.
gi 229553905 999 QlESQNRELQE 1009
Cdd:PLN02939 397 E-ESKKRSLEH 406
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
920-1088 |
2.00e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 920 KVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLEGFQKPSASLSQ 999
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1000 LESqnreLQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRK 1079
Cdd:COG1579 91 YEA----LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
....*....
gi 229553905 1080 KAQRELEEQ 1088
Cdd:COG1579 167 ELAAKIPPE 175
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
671-1080 |
2.31e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 671 VETTLQETQGENDEFRRRILGLEQQ----LKETRGLAEGGEAAEARLR------DKLQRLEVEKQRLEEALSEAQAEEGS 740
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKShsitLKEIERLSIEYNNAMDDYNnlksalNELSSLEDMKNRYESEIKTAESDLSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 741 LAAAKRALEARLEEAQR------------------------GLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRL 796
Cdd:PRK01156 268 ELEKNNYYKELEERHMKiindpvyknrnyindyfkykndieNKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSR 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 797 LDRtverLNKELEQIGEDSK------QALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQ 870
Cdd:PRK01156 348 YDD----LNNQILELEGYEMdynsylKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 871 TLQASQADLDTARLDKELLAQRLQGLEQEA-----------EKKRRSQDDRTRQVKSLEEKVSRLEME---LDEERNTVE 936
Cdd:PRK01156 424 KVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEvkdIDEKIVDLK 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 937 LLTDRINRsrDQVDQLRTELMQERSARQDLECDKISLER-QNKDLKGRLASlegFQKPSASLSQLESQNRELQERLQAED 1015
Cdd:PRK01156 504 KRKEYLES--EEINKSINEYNKIESARADLEDIKIKINElKDKHDKYEEIK---NRYKSLKLEDLDSKRTSWLNALAVIS 578
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 229553905 1016 --------REKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRKK 1080
Cdd:PRK01156 579 lidietnrSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGK 651
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
564-1094 |
2.36e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.12 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 564 ELRAAKQELLQLRMEKDEMEEELGEKMEALQRelgqarAGAGGSRQVEElrklqgEAERVRELEQQNLQLQKKTQQLSQD 643
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEK------KASALKRQLDR------ESDRNQELQKRIRLLEKREAEAEEA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 644 CAEATKARGARMAAEAEAALLVQRRTAVETTLQETQ----GENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQR 719
Cdd:pfam05557 71 LREQAELNRLKKKYLEALNKKLNEKESQLADAREVIsclkNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 720 LEVEKQRLEEALSEAQAEEGSLAAAKRALE------ARLEEAQRGLSRMgQEQQALSRALEEEGKQREALRRGKAELEEQ 793
Cdd:pfam05557 151 AEQLRQNLEKQQSSLAEAEQRIKELEFEIQsqeqdsEIVKNSKSELARI-PELEKELERLREHNKHLNENIENKLLLKEE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 794 KRLLDRTVERLnkeleqigEDSKQALHQLQSQLEDykeksrrevadAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQ 873
Cdd:pfam05557 230 VEDLKRKLERE--------EKYREEAATLELEKEK-----------LEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQ 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 874 ASQAdldtarldkelLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVE-------LLTDRINRSR 946
Cdd:pfam05557 291 REIV-----------LKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRrlqrrvlLLTKERDGYR 359
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 947 DQVDQLRTELMQERSARQDLECDKiSLERQNKDLKGRLASLE----------GFQKPSASLSQLESQNRELQERLQAED- 1015
Cdd:pfam05557 360 AILESYDKELTMSNYSPQLLERIE-EAEDMTQKMQAHNEEMEaqlsvaeeelGGYKQQAQTLERELQALRQQESLADPSy 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1016 ---------REKTVLQSTNRKLERRVKELSIQIddERQHVNDQKDQLSLKV------------KALKRQVDEAEEEIERL 1074
Cdd:pfam05557 439 skeevdslrRKLETLELERQRLREQKNELEMEL--ERRCLQGDYDPKKTKVlhlsmnpaaeayQQRKNQLEKLQAEIERL 516
|
570 580
....*....|....*....|
gi 229553905 1075 DGLRKKAQRELEEQHEANEQ 1094
Cdd:pfam05557 517 KRLLKKLEDDLEQVLRLPET 536
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
876-1104 |
2.48e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.52 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 876 QADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTE 955
Cdd:COG1340 14 EEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELNEKLNELREE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 956 LMQERSARQDLECDKISLERqnkdLKGRLASLEgFQKPSASLS-----QLESQNRELQERLQAEDREKTVlQSTNRKLER 1030
Cdd:COG1340 94 LDELRKELAELNKAGGSIDK----LRKEIERLE-WRQQTEVLSpeeekELVEKIKELEKELEKAKKALEK-NEKLKELRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 1031 RVKELSIQIDDERQHVN---DQKDQLSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEK 1104
Cdd:COG1340 168 ELKELRKEAEEIHKKIKelaEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRK 244
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
693-1091 |
2.51e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 693 EQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQA--------EEGSLAAAKRALEARLEEAQRGLSRMGQ 764
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRllprlnllADETLADRVEEIREQLDEAEEAKRFVQQ 915
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 765 EQQALSR------ALEEEGKQREALRRGKAELEE-------QKRLLDRTVERLN----KELEQIGEDSKQALHQLQSQLE 827
Cdd:PRK04863 916 HGNALAQlepivsVLQSDPEQFEQLKQDYQQAQQtqrdakqQAFALTEVVQRRAhfsyEDAAEMLAKNSDLNEKLRQRLE 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 828 DyKEKSRREVADAQRQAKEWASEAEKSsggLSRLQDETQRLRQTLQASQADLDtarldkELLAQRLQGLEQEAEKKRRSQ 907
Cdd:PRK04863 996 Q-AEQERTRAREQLRQAQAQLAQYNQV---LASLKSSYDAKRQMLQELKQELQ------DLGVPADSGAEERARARRDEL 1065
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 908 DDRTRQVKS----LEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELmqersarqdleCDKISLERQNKDLKG- 982
Cdd:PRK04863 1066 HARLSANRSrrnqLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGW-----------CAVLRLVKDNGVERRl 1134
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 983 ---RLASLEGFQKPSASLSQLE------SQNRELqerlqaedREKTVLQSTNRKLERRVkELSIQIddeRQHVNDQKDQL 1053
Cdd:PRK04863 1135 hrrELAYLSADELRSMSDKALGalrlavADNEHL--------RDVLRLSEDPKRPERKV-QFYIAV---YQHLRERIRQD 1202
|
410 420 430
....*....|....*....|....*....|....*...
gi 229553905 1054 SLKvkalkrqVDEAEEEIERLDGLRKKAQRELEEQHEA 1091
Cdd:PRK04863 1203 IIR-------TDDPVEAIEQMEIELSRLTEELTSREQK 1233
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
672-882 |
2.55e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 672 ETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEegsLAAAKRALEAR 751
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE---IEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 752 LEEAQRGLSRMG---------------QEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIgEDSK 816
Cdd:COG3883 92 ARALYRSGGSVSyldvllgsesfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL-EAAK 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 229553905 817 QALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTA 882
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
779-1088 |
2.63e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 779 QREALRRGKaELEEQKRLLDRTVERLNKELEQIgEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGL 858
Cdd:PRK11281 44 QLDALNKQK-LLEAEDKLVQQDLEQTLALLDKI-DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 859 S--RLQDETQRLRQTLQASQADLDTArlDKELLAQrlqgleqeaekkrRSQDDRTRqvKSLEEKVSRLEMeldeerntve 936
Cdd:PRK11281 122 SlrQLESRLAQTLDQLQNAQNDLAEY--NSQLVSL-------------QTQPERAQ--AALYANSQRLQQ---------- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 937 lLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQnkDLKG--RLASLEGFQKP--SASLSQLESQNRELQERLQ 1012
Cdd:PRK11281 175 -IRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRK--SLEGntQLQDLLQKQRDylTARIQRLEHQLQLLQEAIN 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1013 AEDREKTvlQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSlkvKALKRQVDEA----EEEIE---RLDGLrKKAQREL 1085
Cdd:PRK11281 252 SKRLTLS--EKTVQEAQSQDEAARIQANPLVAQELEINLQLS---QRLLKATEKLntltQQNLRvknWLDRL-TQSERNI 325
|
...
gi 229553905 1086 EEQ 1088
Cdd:PRK11281 326 KEQ 328
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
849-1122 |
2.90e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 849 SEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMEL 928
Cdd:pfam02463 156 LEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 929 DEERNTVELLTdRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLEgfqkpsasLSQLESQNRELQ 1008
Cdd:pfam02463 236 EERIDLLQELL-RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE--------EEELKSELLKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1009 ERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSL----KVKALKRQVDEAEEEIERLDGLRKKAQRE 1084
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAeeeeEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270
....*....|....*....|....*....|....*...
gi 229553905 1085 LEEQHEANEQLQARIRALEKDSWRKAARSAAESSLQQE 1122
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEE 424
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
670-1074 |
3.02e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 44.83 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 670 AVETTLQETQGENDEFR----RRILG-LEQQLKETRGLAEG--GEAAEARLRDKLQRLEVE--KQRLEEALSEAQAEEGS 740
Cdd:PRK04778 83 DIEEQLFEAEELNDKFRfrkaKHEINeIESLLDLIEEDIEQilEELQELLESEEKNREEVEqlKDLYRELRKSLLANRFS 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 741 LAAAKRALEARLEEAQRGLSRMGQeqqalsraLEEEGKQREAlrrgkaelEEQKRLLDRTVERLNKELEQIGEDSKQALH 820
Cdd:PRK04778 163 FGPALDELEKQLENLEEEFSQFVE--------LTESGDYVEA--------REILDQLEEELAALEQIMEEIPELLKELQT 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 821 QLQSQLEDYKEKSRrevadaQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLqaSQADLDTARLDKELLAQRLQGL---- 896
Cdd:PRK04778 227 ELPDQLQELKAGYR------ELVEEGYHLDHLDIEKEIQDLKEQIDENLALL--EELDLDEAEEKNEEIQERIDQLydil 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 897 EQEAEKKR---RSQDDRTRQVKSLEEKVSRLEMELD----------EERNTVELLTDRINRSRDQVDQLRTELMQERSAR 963
Cdd:PRK04778 299 EREVKARKyveKNSDTLPDFLEHAKEQNKELKEEIDrvkqsytlneSELESVRQLEKQLESLEKQYDEITERIAEQEIAY 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 964 QDLEcdkislERQNKDLKgRLASLEGFQ-KPSASLSQLESQNRELQERLQaedREKTVLQSTNRKLERR--------VKE 1034
Cdd:PRK04778 379 SELQ------EELEEILK-QLEEIEKEQeKLSEMLQGLRKDELEAREKLE---RYRNKLHEIKRYLEKSnlpglpedYLE 448
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 229553905 1035 LSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERL 1074
Cdd:PRK04778 449 MFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETL 488
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
817-1122 |
3.42e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 817 QALHQLQSQledykeksrREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADldTARLDKE---LLAQRL 893
Cdd:pfam17380 273 QLLHIVQHQ---------KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKAR--QAEMDRQaaiYAEQER 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 894 QGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRIN-RSRDQVDQLRTELMQERSARQDLECDKIS 972
Cdd:pfam17380 342 MAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNeRVRQELEAARKVKILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 973 LER----QNKDLKGRLASLEGFQKPSASLSQLESQNRELQ-ERL--QAEDREKTVLQSTNRKLERRVKE------LSIQI 1039
Cdd:pfam17380 422 MEQiraeQEEARQREVRRLEEERAREMERVRLEEQERQQQvERLrqQEEERKRKKLELEKEKRDRKRAEeqrrkiLEKEL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1040 DDERQHVNDQKDQLSLKVKALK-RQVDEAEEEIERLDGLRKKAQRELEEQHEANEQL------QARIRALEKDswRKAAR 1112
Cdd:pfam17380 502 EERKQAMIEEERKRKLLEKEMEeRQKAIYEEERRREAEEERRKQQEMEERRRIQEQMrkateeRSRLEAMERE--REMMR 579
|
330
....*....|
gi 229553905 1113 SAAESSLQQE 1122
Cdd:pfam17380 580 QIVESEKARA 589
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
675-1104 |
6.28e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 675 LQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAE--------EGSLAAAKR 746
Cdd:pfam12128 236 IMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQwkekrdelNGELSAADA 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 747 ALEARLEEAQRGLSRMGQEQQAlsrALEEEGKQREALRRGKAELEEQKRLLD------RTVERLNKELEQ-IGEDSKQAL 819
Cdd:pfam12128 316 AVAKDRSELEALEDQHGAFLDA---DIETAAADQEQLPSWQSELENLEERLKaltgkhQDVTAKYNRRRSkIKEQNNRDI 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 820 HQLQSQLEDYKEKSRREVA----DAQRQAKEWASEAEkssGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQrLQG 895
Cdd:pfam12128 393 AGIKDKLAKIREARDRQLAvaedDLQALESELREQLE---AGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ-LEN 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 896 LEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLECDKISLER 975
Cdd:pfam12128 469 FDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 976 QNKdlkGRLASLEGFQK----PSASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKD 1051
Cdd:pfam12128 549 QSI---GKVISPELLHRtdldPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEE 625
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 229553905 1052 QLSLKVKAL----------KRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQL-QARIRALEK 1104
Cdd:pfam12128 626 QLVQANGELekasreetfaRTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSaNERLNSLEA 689
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
718-946 |
6.80e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 718 QRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEE--AQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKR 795
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 796 LLDRTVERLNKELEQIGEDS-----KQALHQLQSQLEDYKEKSRREVADAQRqakewaseaekssgglsrLQDETQRLRQ 870
Cdd:COG3206 244 ALRAQLGSGPDALPELLQSPviqqlRAQLAELEAELAELSARYTPNHPDVIA------------------LRAQIAALRA 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 871 TLQA-SQADLDTARLDKELLAQRLQGLEQEAEKkrrsQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSR 946
Cdd:COG3206 306 QLQQeAQRILASLEAELEALQAREASLQAQLAQ----LEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
975-1114 |
7.94e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.54 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 975 RQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERLQAEDREKTVLQ-STNRKLERRVKELSIQIDDERQHVNDQKDQL 1053
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRErEELQREEERLVQKEEQLDARAEKLDNLENQL 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 229553905 1054 SLKVKALKRQVDEAEEEIERLD-------GLRKKAQREL---EEQHEANEQLQARIRALEKDSWRKAARSA 1114
Cdd:PRK12705 108 EEREKALSARELELEELEKQLDnelyrvaGLTPEQARKLllkLLDAELEEEKAQRVKKIEEEADLEAERKA 178
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
675-832 |
8.60e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 8.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 675 LQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAE----EGSLAAAK----- 745
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARikkyEEQLGNVRnnkey 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 746 RALEARLEEAQRglsrmgqEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQ 825
Cdd:COG1579 92 EALQKEIESLKR-------RISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
....*..
gi 229553905 826 LEDYKEK 832
Cdd:COG1579 165 REELAAK 171
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
648-940 |
8.82e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 648 TKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRL 727
Cdd:COG4372 6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 728 EEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKE 807
Cdd:COG4372 86 NEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 808 LEQIGE-----DSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTA 882
Cdd:COG4372 166 LAALEQelqalSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELE 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 229553905 883 RLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTD 940
Cdd:COG4372 246 EDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLN 303
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
788-931 |
1.04e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 788 AELEEQKRLLD---RTVERLNKELEQIGEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDE 864
Cdd:PRK00409 523 ASLEELERELEqkaEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYA 602
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 229553905 865 TQRLRQTLQAsqadldtarldKELLAQRLQGLEQEAEKKRRSQD-----DRTRqVKSLEEKVSRLEMELDEE 931
Cdd:PRK00409 603 SVKAHELIEA-----------RKRLNKANEKKEKKKKKQKEKQEelkvgDEVK-YLSLGQKGEVLSIPDDKE 662
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
573-1105 |
1.04e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 573 LQLRMEKDEMEEELGEKMEALQRELGQARAGAGGSRQveELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARG 652
Cdd:COG3096 549 LDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQ--QLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQ 626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 653 ARMAAEAEAallVQRRTAVETTLQETQGENDEFRRRILGLEQ----------QLKETRG---LAEG-------------- 705
Cdd:COG3096 627 EVTAAMQQL---LEREREATVERDELAARKQALESQIERLSQpggaedprllALAERLGgvlLSEIyddvtledapyfsa 703
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 706 --GEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEgkqreal 783
Cdd:COG3096 704 lyGPARHAIVVPDLSAVKEQLAGLEDCPEDLYLIEGDPDSFDDSVFDAEELEDAVVVKLSDRQWRYSRFPEVP------- 776
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 784 RRGKAELEEQKRLLDRTVERLNKELEQIGEDSK--QALHQLQSQL-------------EDYKEKSRREVADAQRQakewa 848
Cdd:COG3096 777 LFGRAAREKRLEELRAERDELAEQYAKASFDVQklQRLHQAFSQFvgghlavafapdpEAELAALRQRRSELERE----- 851
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 849 seaekssggLSRLQDETQRLRQTLQASQADLDTAR--------LDKELLAQRLQGLEQE---AEKKRRSQDDRTRQVKSL 917
Cdd:COG3096 852 ---------LAQHRAQEQQLRQQLDQLKEQLQLLNkllpqanlLADETLADRLEELREEldaAQEAQAFIQQHGKALAQL 922
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 918 EEKVSRLE---MELDEERNTVELLTDRINRSRDQVDQLrTELMQERS--ARQDLECDKISLERQNKDLKGRLASLEGFQK 992
Cdd:COG3096 923 EPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIFAL-SEVVQRRPhfSYEDAVGLLGENSDLNEKLRARLEQAEEARR 1001
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 993 PS-ASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDErqhvndqkdqlslKVKALKRQVDEAEEEI 1071
Cdd:COG3096 1002 EArEQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAE-------------AEERARIRRDELHEEL 1068
|
570 580 590
....*....|....*....|....*....|....
gi 229553905 1072 ERLDGLRKKAQRELEEQHEANEQLQARIRALEKD 1105
Cdd:COG3096 1069 SQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERD 1102
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
611-962 |
1.12e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.75 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 611 EELRKLQGEAERVRELEQQNLQLQKKTQQLSQDCAEATKARGArmaAEAEAALLVQRRTAVETTLQETQGENDEFR---- 686
Cdd:pfam19220 38 AILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSA---AEGELEELVARLAKLEAALREAEAAKEELRielr 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 687 ---RRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEaqrglsrMG 763
Cdd:pfam19220 115 dktAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEE-------QA 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 764 QEQQALSRALEEEGKQREALRRGKAELEEQkrLLDRTVERlnkeleqigedskqalHQLQSQLEDYKEKSRREVADAQRQ 843
Cdd:pfam19220 188 AELAELTRRLAELETQLDATRARLRALEGQ--LAAEQAER----------------ERAEAQLEEAVEAHRAERASLRMK 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 844 AKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSR 923
Cdd:pfam19220 250 LEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEERAEM 329
|
330 340 350
....*....|....*....|....*....|....*....
gi 229553905 924 LEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSA 962
Cdd:pfam19220 330 LTKALAAKDAALERAEERIASLSDRIAELTKRFEVERAA 368
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
740-1147 |
1.19e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.97 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 740 SLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLdRTVERLNKELEQIGEDSKQAL 819
Cdd:PLN02939 23 FYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSL-RTVMELPQKSTSSDDDHNRAS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 820 HQLQSQLEDYKEKSRREVADAQrqakewaseaekssgGLSRLQDETqrLRQTLQASQADldTARLDKellaQRLQGLEqE 899
Cdd:PLN02939 102 MQRDEAIAAIDNEQQTNSKDGE---------------QLSDFQLED--LVGMIQNAEKN--ILLLNQ----ARLQALE-D 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 900 AEKKRRSQDDRTRQVKSLEEKVSRLEMELD---EERNTVELLTDRINRSRDQVDQlrtELMQERSARQDLECDKISLERQ 976
Cdd:PLN02939 158 LEKILTEKEALQGKINILEMRLSETDARIKlaaQEKIHVEILEEQLEKLRNELLI---RGATEGLCVHSLSKELDVLKEE 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 977 NKDLKGRLASLEgfqkpsASLSQLesqnRELQERLQAEDREKTVLQSTNRKLERRvkeLSIQIDDERQHVNDQKDQLSLK 1056
Cdd:PLN02939 235 NMLLKDDIQFLK------AELIEV----AETEERVFKLEKERSLLDASLRELESK---FIVAQEDVSKLSPLQYDCWWEK 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1057 VKAL-------KRQVDEAEEEIERLDGLRKKAQRELEEQHEAN---------EQLQARIRALEKDSWRKAARSAAESSLQ 1120
Cdd:PLN02939 302 VENLqdlldraTNQVEKAALVLDQNQDLRDKVDKLEASLKEANvskfssykvELLQQKLKLLEERLQASDHEIHSYIQLY 381
|
410 420
....*....|....*....|....*..
gi 229553905 1121 QEglsSDEEFDgvynpNSIASLLTESG 1147
Cdd:PLN02939 382 QE---SIKEFQ-----DTLSKLKEESK 400
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1000-1112 |
1.42e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1000 LESQNRELQERLQAEdREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEEIERLDGLRK 1079
Cdd:PRK12704 60 LEAKEEIHKLRNEFE-KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
|
90 100 110
....*....|....*....|....*....|....*...
gi 229553905 1080 KAQRELEE-----QHEANEQLqarIRALEKDSWRKAAR 1112
Cdd:PRK12704 139 EQLQELERisgltAEEAKEIL---LEKVEEEARHEAAV 173
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
781-1105 |
1.55e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 781 EALRRGKAELEEQKRLLDRTVERLNKELEQIGED---SKQALHQLQSqLEDYKEKSRREVADAQRQAKEWASEAEKSSGG 857
Cdd:PRK01156 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDynnLKSALNELSS-LEDMKNRYESEIKTAESDLSMELEKNNYYKEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 858 LSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQeaekkrrsqddrtrQVKSLEEKVSRLEmELDEERNTVEL 937
Cdd:PRK01156 279 EERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDA--------------EINKYHAIIKKLS-VLQKDYNDYIK 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 938 LTDRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLE-----GFQKPSASLSQLESQNRELQE--- 1009
Cdd:PRK01156 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISeilkiQEIDPDAIKKELNEINVKLQDiss 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1010 RLQAEDREKTVLQSTNRKLERRVKELSIQ--------------IDDERQHVNDQKDQLSLKVKALKRQVDEAEEEI---- 1071
Cdd:PRK01156 424 KVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgttlgeekSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIvdlk 503
|
330 340 350
....*....|....*....|....*....|....
gi 229553905 1072 ERLDGLRKKAQRELEEQHEANEQLQARIRALEKD 1105
Cdd:PRK01156 504 KRKEYLESEEINKSINEYNKIESARADLEDIKIK 537
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
706-1070 |
1.55e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 706 GEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRR 785
Cdd:COG4372 1 GDRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 786 GKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQS------QLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLS 859
Cdd:COG4372 81 ELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEElqkerqDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 860 RLQDETQRLRQTLQASQADLDTARLDkELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLT 939
Cdd:COG4372 161 SLQEELAALEQELQALSEAEAEQALD-ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 940 DRINRSRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKGRLASLEGFQKPSASLSQLESQNRELQERLQAEDREKT 1019
Cdd:COG4372 240 DALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLA 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 229553905 1020 VLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLKVKALKRQVDEAEEE 1070
Cdd:COG4372 320 ALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
470-714 |
1.73e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 470 EEQLRQRERELTALKGALKEEVASRDQ------EVEHVRQQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRGLQRE 543
Cdd:COG3096 888 DETLADRLEELREELDAAQEAQAFIQQhgkalaQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRR 967
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 544 L----EETSEETGHWQTMFQKNKEELRAAKQELLQLRmekdemeeelgEKMEALQRELGQA---RAGAGGSRQVeelrKL 616
Cdd:COG3096 968 PhfsyEDAVGLLGENSDLNEKLRARLEQAEEARREAR-----------EQLRQAQAQYSQYnqvLASLKSSRDA----KQ 1032
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 617 QGEAERVRELEQQNLQLqkktqqlsqDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQL 696
Cdd:COG3096 1033 QTLQELEQELEELGVQA---------DAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDY 1103
|
250
....*....|....*...
gi 229553905 697 KETRGLAEGGEAAEARLR 714
Cdd:COG3096 1104 KQEREQVVQAKAGWCAVL 1121
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
897-1152 |
2.31e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 897 EQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSArqdlecdkisLERQ 976
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE----------IEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 977 NKDLKGRLASLegfQKPSASLSQLES--QNRELQERLQAEDREKTVLQSTNRKLErrvkelsiQIDDERQHVNDQKDQLS 1054
Cdd:COG3883 85 REELGERARAL---YRSGGSVSYLDVllGSESFSDFLDRLSALSKIADADADLLE--------ELKADKAELEAKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1055 LKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKDSWRKAARSAAESSLQQEGLSSDEEFDGVY 1134
Cdd:COG3883 154 AKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250
....*....|....*...
gi 229553905 1135 NPNSIASLLTESGLQTSS 1152
Cdd:COG3883 234 AAAAAAAAAAASAAGAGA 251
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
883-1102 |
2.42e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 883 RLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVEllTDRINRSRDQVDQLRT--ELMQER 960
Cdd:COG5022 863 LLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLS--SDLIENLEFKTELIARlkKLLNNI 940
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 961 SARQDLECDKISLERQNKDLKGRlaslegfqkpsaslSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSiQID 1040
Cdd:COG5022 941 DLEEGPSIEYVKLPELNKLHEVE--------------SKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELA-ELS 1005
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 229553905 1041 DERQHVNDQKDQLslkvKALKRQVDEAEEEIERLDGLRKKAQRELEEQH------EANEQLQARIRAL 1102
Cdd:COG5022 1006 KQYGALQESTKQL----KELPVEVAELQSASKIISSESTELSILKPLQKlkglllLENNQLQARYKAL 1069
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
882-1036 |
2.66e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 882 ARLDKELLAQRLQGLEQEAEKKRRSQDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTElmQERS 961
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSE--ERRE 460
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 229553905 962 ARQDLECDKisLERQNKDLKGRLAslegfqkpsaslsQLESQNRELQERLqaeDREKTVLQSTNRKLERRVKELS 1036
Cdd:COG2433 461 IRKDREISR--LDREIERLERELE-------------EERERIEELKRKL---ERLKELWKLEHSGELVPVKVVE 517
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
716-891 |
2.88e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 716 KLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEgkqREALRRGKAELEEQKR 795
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEV---EARIKKYEEQLGNVRN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 796 LldRTVERLNKELEQIgEDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQAS 875
Cdd:COG1579 88 N--KEYEALQKEIESL-KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
170
....*....|....*.
gi 229553905 876 QADLdTARLDKELLAQ 891
Cdd:COG1579 165 REEL-AAKIPPELLAL 179
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
813-939 |
3.24e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.19 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 813 EDSKQALHQLQSQLEDYKEKSRREVADAQRQAKEWASEAEKSSG--GLSRLQDETQRLRQTLQ---ASQADLDTARLDKE 887
Cdd:COG1566 79 TDLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAAEAQLAAAqaQLDLAQRELERYQALYKkgaVSQQELDEARAALD 158
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 229553905 888 LLAQRLQGLEQEAEKKRRSQDDRTrQVKSLEEKVSRLEMELDEERNTVELLT 939
Cdd:COG1566 159 AAQAQLEAAQAQLAQAQAGLREEE-ELAAAQAQVAQAEAALAQAELNLARTT 209
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
566-1101 |
3.27e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 566 RAAKQELLQLRMEKDEMEEELGEKMEALQRELgqaragaggsrqveelRKLQGEAERVRELEQQNLQLQKK----TQQLS 641
Cdd:COG5022 853 RSLKAKKRFSLLKKETIYLQSAQRVELAERQL----------------QELKIDVKSISSLKLVNLELESEiielKKSLS 916
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 642 QDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENdEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLE 721
Cdd:COG5022 917 SDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELN-KLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELK 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 722 VEKQRLEEALSEAQAEEGSlaaakralEARLEEAQRGLSRMGQEQQALSraleeegKQREALRRgKAELEEQKRLLDRTV 801
Cdd:COG5022 996 NFKKELAELSKQYGALQES--------TKQLKELPVEVAELQSASKIIS-------SESTELSI-LKPLQKLKGLLLLEN 1059
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 802 ERLNKELEQIG---EDSKQALHQLqSQLEDYKEKSRR-EVADAQRQAKEWASEAEKSS---GGLSRLQDETQ------RL 868
Cdd:COG5022 1060 NQLQARYKALKlrrENSLLDDKQL-YQLESTENLLKTiNVKDLEVTNRNLVKPANVLQfivAQMIKLNLLQEiskflsQL 1138
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 869 RQTLQASQADLDTARLDKELLAqRLQGLEQEAEKKRRS--QDDRTRQVKSLEEKVSRLEMELDEERNTVELLTDRINrsr 946
Cdd:COG5022 1139 VNTLEPVFQKLSVLQLELDGLF-WEANLEALPSPPPFAalSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIF--- 1214
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 947 dqvdqlrtELMQERSARQDLECDKISLERQNKDLKGRLASLEGFQKP-SASLSQLESQNRELQERLQAEDREKTVLQSTn 1025
Cdd:COG5022 1215 --------SGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPaSMSNEKLLSLLNSIDNLLSSYKLEEEVLPAT- 1285
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 229553905 1026 rklerrvkelsiqIDDERQHVND-QKDQLSLKVKALKR-QVDEAEEEIERLDGLRKKAqreleEQHEANEQLQARIRA 1101
Cdd:COG5022 1286 -------------INSLLQYINVgLFNALRTKASSLRWkSATEVNYNSEELDDWCREF-----EISDVDEELEELIQA 1345
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
349-762 |
3.57e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 349 LAQKVEELQRKLDEevkKRQVLEPSRL---ELEQQLEEKAEECLRLQELLERQKGETRQSGTELQNLRLLLDQAGRVRSE 425
Cdd:PRK02224 312 VEARREELEDRDEE---LRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEE 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 426 LETQVMELQDQLKQGPVpakeglmkDLLETRELLEEVLEGKQRVEEQLRQRERELTALKGALKEEVASRD--------QE 497
Cdd:PRK02224 389 LEEEIEELRERFGDAPV--------DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgQP 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 498 VE---HVR--QQCQRDTEQLRKSIQDASQDQAALEAERQKMSALVRgLQRELEETSEETGHWQTMFQKNKEELRAAKQEL 572
Cdd:PRK02224 461 VEgspHVEtiEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAERRETIEEKRERA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 573 LQLRMEKDEMEEELGEKMEALQRELGQA-----RAGAGGSRQ------VEELRKLQGEAERVRELEQQNLQLQKKTQQLS 641
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEAEEEAeeareEVAELNSKLaelkerIESLERIRTLLAAIADAEDEIERLREKREALA 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 642 ----------QDCAEATKARGARMAAEAEAALLVQRRTA------VETTLQETQGENDEFRRRILGLEQQLKETRglaeg 705
Cdd:PRK02224 620 elnderrerlAEKRERKRELEAEFDEARIEEAREDKERAeeyleqVEEKLDELREERDDLQAEIGAVENELEELE----- 694
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 706 geaaeaRLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAqrgLSRM 762
Cdd:PRK02224 695 ------ELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVET---LERM 742
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
529-1111 |
3.62e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 529 ERQKMSALvrglQRELEETSEETGHWQTMFQKNKEELRAAKqELLQLRMEKDEMEEELGEKMEALQRelgqaragaggsR 608
Cdd:pfam10174 51 EAARISVL----KEQYRVTQEENQHLQLTIQALQDELRAQR-DLNQLLQQDFTTSPVDGEDKFSTPE------------L 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 609 QVEELRKLQGEAER-VRELEQqnlqLQKKTQQLSQDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETqgenDEFRR 687
Cdd:pfam10174 114 TEENFRRLQSEHERqAKELFL----LRKTLEEMELRIETQKQTLGARDESIKKLLEMLQSKGLPKKSGEED----WERTR 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 688 RILGLEQQLKETRGLAEGGEAAEARLRDKLQRlevekqrlEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQ 767
Cdd:pfam10174 186 RIAEAEMQLGHLEVLLDQKEKENIHLREELHR--------RNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQ 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 768 AL-------SRALEEEGKQREALRRG----KAELEEQKRLLDRT---VERLNKELEQIG---EDSKQALHQLQSQLEDYK 830
Cdd:pfam10174 258 MLktngllhTEDREEEIKQMEVYKSHskfmKNKIDQLKQELSKKeseLLALQTKLETLTnqnSDCKQHIEVLKESLTAKE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 831 EKS---RREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQ 907
Cdd:pfam10174 338 QRAailQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQL 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 908 DDRTRQVKSLEEKVSR-------LEMELDEERNTVELLTDRINRS----RDQVDQLRTELMQERSARQDLECDKISLERQ 976
Cdd:pfam10174 418 AGLKERVKSLQTDSSNtdtalttLEEALSEKERIIERLKEQREREdrerLEELESLKKENKDLKEKVSALQPELTEKESS 497
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 977 NKDLKGRLASLEgfQKPSASLSQLESQNRELQERLQAEDREKTVLQSTNRKlerrvkELSIQIDDErqhVNDQKDQLSLK 1056
Cdd:pfam10174 498 LIDLKEHASSLA--SSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNA------EEAVRTNPE---INDRIRLLEQE 566
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 229553905 1057 VKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQARIRALEKDSWRKAA 1111
Cdd:pfam10174 567 VARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVA 621
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
473-953 |
4.16e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 473 LRQRERELTALKGALKEEVASRDQEVEHVRQQCQRDtEQLRKSIQDASQDQAALEAERQKMSALVRGLQRELEETSEEtg 552
Cdd:TIGR04523 164 LKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKL-ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQE-- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 553 hwqtmFQKNKEELRAAKQELLQLRMEKDEMEEELGEKMEALQRELGQARAGAGGSRQVE-ELRKLQGEAERV-------- 623
Cdd:TIGR04523 241 -----INEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKsEISDLNNQKEQDwnkelkse 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 624 -----RELEQQNLQLQKKTQQLSQDCAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDEFRRRILGLEQQLKE 698
Cdd:TIGR04523 316 lknqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIND 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 699 trglaeggeaaearLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALEEEGK 778
Cdd:TIGR04523 396 --------------LESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 779 QREAL-----------RRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQA--LHQLQSQLEDYKEKSRREVADAQRQAK 845
Cdd:TIGR04523 462 TRESLetqlkvlsrsiNKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVkdLTKKISSLKEKIEKLESEKKEKESKIS 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 846 EWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLD-----KELLAQRLQG----LEQEAEKKRRSQDDRTRQVKS 916
Cdd:TIGR04523 542 DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKkkqeeKQELIDQKEKekkdLIKEIEEKEKKISSLEKELEK 621
|
490 500 510
....*....|....*....|....*....|....*..
gi 229553905 917 LEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLR 953
Cdd:TIGR04523 622 AKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
372-653 |
4.26e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 372 PSRLELEQQLEEKAEeclrlQELLERQKGETRQsgtELQNLRLLLDQAGRVRSELEtqvmELQDQLKQGPvpakeglmkd 451
Cdd:PRK11281 36 PTEADVQAQLDALNK-----QKLLEAEDKLVQQ---DLEQTLALLDKIDRQKEETE----QLKQQLAQAP---------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 452 lletrelleevlegkqrveEQLRQRERELTALKGALKEEVASRdqevehVRQQCQRDTEQLRKSIQDASQD-QAALEAer 530
Cdd:PRK11281 94 -------------------AKLRQAQAELEALKDDNDEETRET------LSTLSLRQLESRLAQTLDQLQNaQNDLAE-- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 531 qkMSALVRGLQRELEETSEETGHWQTMFQK----------NKEELRAAKQELLQLrmekdemEEELGEKMEALQRELGQa 600
Cdd:PRK11281 147 --YNSQLVSLQTQPERAQAALYANSQRLQQirnllkggkvGGKALRPSQRVLLQA-------EQALLNAQNDLQRKSLE- 216
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 601 ragagGSRQVEELRKLQGE--AERVRELEQQNLQLQ-----KKTQQLSQDCAEATKARGA 653
Cdd:PRK11281 217 -----GNTQLQDLLQKQRDylTARIQRLEHQLQLLQeainsKRLTLSEKTVQEAQSQDEA 271
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
724-1121 |
4.51e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 724 KQRLEEALSEAQAEEGSLAAAKRA--LEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTV 801
Cdd:pfam12128 220 RQQVEHWIRDIQAIAGIMKIRPEFtkLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQW 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 802 ERLNKELEQIGEDSKQALHQLQSQLEDYKEKSRR-------EVADAQRQAKEWASEAEKSS-------GGLSRLQDETQR 867
Cdd:pfam12128 300 KEKRDELNGELSAADAAVAKDRSELEALEDQHGAfldadieTAAADQEQLPSWQSELENLEerlkaltGKHQDVTAKYNR 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 868 LRQtLQASQADLDTARLDKELLAQR-------------LQGLEQEAEKKRRSQDDRTR-QVKSLEEKVSRLEMELDEERN 933
Cdd:pfam12128 380 RRS-KIKEQNNRDIAGIKDKLAKIReardrqlavaeddLQALESELREQLEAGKLEFNeEEYRLKSRLGELKLRLNQATA 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 934 TVELLTDrINRSRDQVDQLRTELMQERSARQDLECDKISLErqnkdlKGRLASLEGFQKPSASLSQLESQNRELQERL-- 1011
Cdd:pfam12128 459 TPELLLQ-LENFDERIERAREEQEAANAEVERLQSELRQAR------KRRDQASEALRQASRRLEERQSALDELELQLfp 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1012 -----------QAEDREKTVLQSTNRKLERRVkELSIQIDDERQHVNDQKDQLSLKVKALK--RQVDEAEEEIERLDGLR 1078
Cdd:pfam12128 532 qagtllhflrkEAPDWEQSIGKVISPELLHRT-DLDPEVWDGSVGGELNLYGVKLDLKRIDvpEWAASEEELRERLDKAE 610
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 229553905 1079 KKAQRELEEQHEANEQLQARIRALEKdswRKAARSAAESSLQQ 1121
Cdd:pfam12128 611 EALQSAREKQAAAEEQLVQANGELEK---ASREETFARTALKN 650
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
356-570 |
4.54e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 356 LQRKLDEEVKKRQVLEPSRLELEQQLEEKAEeclRLQELLERQK-----GETRQSGTELQNLRLLLDQAGRVRSELETQV 430
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEA---ALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 431 MELQDQLKQGPVPAKEgLMKDLLETRELLEEVLEGKQRVEEQLR---------QRERELTALKGALKEEVASRDQEVEHV 501
Cdd:COG3206 243 AALRAQLGSGPDALPE-LLQSPVIQQLRAQLAELEAELAELSARytpnhpdviALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 229553905 502 RQQCQRDTEQLRKSIQDASQDQAALEAERQKMSAlvrgLQRELeETSEETghwQTMFQKNKEELRAAKQ 570
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRR----LEREV-EVAREL---YESLLQRLEEARLAEA 382
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
683-810 |
4.83e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 683 DEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLE-------EALSEAQAEEGSLAAAKRALEARLEEA 755
Cdd:PRK09039 56 DRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQallaelaGAGAAAEGRAGELAQELDSEKQVSARA 135
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 229553905 756 QRGLSRMGQEQQALSRALeeeGKQREALRRGKAELEEQKRLLDRTVERLNKELEQ 810
Cdd:PRK09039 136 LAQVELLNQQIAALRRQL---AALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
899-1122 |
4.84e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 899 EAEKKRRSQDDRTRQVKSLEEKVSRL--------EMELDEERNTVELLTDRINRSRDQVDQLRtELMQERSARQDLECDK 970
Cdd:COG5185 233 EALKGFQDPESELEDLAQTSDKLEKLveqntdlrLEKLGENAESSKRLNENANNLIKQFENTK-EKIAEYTKSIDIKKAT 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 971 ISLERQnkdlkgrLASLEGFQKPSASLSQLESQNRELQERL------QAEDREKTVLQSTNRKLERRVKELSIQIDDERQ 1044
Cdd:COG5185 312 ESLEEQ-------LAAAEAEQELEESKRETETGIQNLTAEIeqgqesLTENLEAIKEEIENIVGEVELSKSSEELDSFKD 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 1045 HVNDQKDQLSLKVKALKRQVDEAEEEIER----LDGLRKKAQRELEEQHEANEQLQARIRALEKDSWRKAARSAAESSLQ 1120
Cdd:COG5185 385 TIESTKESLDEIPQNQRGYAQEILATLEDtlkaADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSR 464
|
..
gi 229553905 1121 QE 1122
Cdd:COG5185 465 LE 466
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
748-869 |
5.18e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 41.20 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 748 LEARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGK----AELEEQKRLLDRTvERLNKELeqigedsKQALHQLQ 823
Cdd:pfam05911 90 LEAKLVETEQELLRAAAENDALSRSLQERENLLMKLSEEKsqaeAEIEALKSRLESC-EKEINSL-------KYELHVLS 161
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 229553905 824 SQLE---DYKEKSRREVADAQRQAKEwaseaekSSGGLSRLQDETQRLR 869
Cdd:pfam05911 162 KELEirnEEKNMSRRSADAAHKQHLE-------SVKKIAKLEAECQRLR 203
|
|
| CENP-F_leu_zip |
pfam10473 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, ... |
686-831 |
6.00e-03 |
|
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance.
Pssm-ID: 463102 [Multi-domain] Cd Length: 140 Bit Score: 38.43 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 686 RRRILGLEQQLKETrglaeggEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQE 765
Cdd:pfam10473 2 EKKQLHVLEKLKES-------ERKADSLKDKVENLERELEMSEENQELAILEAENSKAEVETLKAEIEEMAQNLRDLELD 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 229553905 766 QQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLQSQLEDYKE 831
Cdd:pfam10473 75 LVTLRSEKENLTKELQKKQERVSELESLNSSLENLLEEKEQEKVQMKEESKTAVEMLQTQLKELNE 140
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
466-1106 |
6.19e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 466 KQRVEEQLRQRERELTALKGALkeevASRDQ--EVEHVR----QQCQRDTEQLRK-------SIQDASQDQAALEAERQK 532
Cdd:COG3096 377 LAEAEARLEAAEEEVDSLKSQL----ADYQQalDVQQTRaiqyQQAVQALEKARAlcglpdlTPENAEDYLAAFRAKEQQ 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 533 MSALVRGLQRELEETSEETGHW----------------QTMFQKNKE------ELRAAKQELLQLRMEKDEMEEELGEKM 590
Cdd:COG3096 453 ATEEVLELEQKLSVADAARRQFekayelvckiageverSQAWQTAREllrryrSQQALAQRLQQLRAQLAELEQRLRQQQ 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 591 EA--LQRELGQARAGAGGSR------------QVEELRKLQGEA-ERVRELEQQNLQLQKKTQQLSQDCAEATKARGARM 655
Cdd:COG3096 533 NAerLLEEFCQRIGQQLDAAeeleellaeleaQLEELEEQAAEAvEQRSELRQQLEQLRARIKELAARAPAWLAAQDALE 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 656 AAEAEAALLVQRRTAVETTLQ-------ETQGENDEFRRRILGLEQQ-----------------LKETRG---LAEG--- 705
Cdd:COG3096 613 RLREQSGEALADSQEVTAAMQqllererEATVERDELAARKQALESQierlsqpggaedprllaLAERLGgvlLSEIydd 692
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 706 -------------GEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRA 772
Cdd:COG3096 693 vtledapyfsalyGPARHAIVVPDLSAVKEQLAGLEDCPEDLYLIEGDPDSFDDSVFDAEELEDAVVVKLSDRQWRYSRF 772
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 773 LEEEgkqrealRRGKAELEEQKRLLDRTVERLNKELEQIGEDSK--QALHQLQSQL-------------EDYKEKSRREV 837
Cdd:COG3096 773 PEVP-------LFGRAAREKRLEELRAERDELAEQYAKASFDVQklQRLHQAFSQFvgghlavafapdpEAELAALRQRR 845
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 838 ADAQRQakewaseaekssggLSRLQDETQRLRQTLQASQADLDTAR--------LDKELLAQRLQGLEQE---AEKKRRS 906
Cdd:COG3096 846 SELERE--------------LAQHRAQEQQLRQQLDQLKEQLQLLNkllpqanlLADETLADRLEELREEldaAQEAQAF 911
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 907 QDDRTRQVKSLEEKVSRLE---MELDEERNTVELLTDRINRSRDQVDQLrTELMQERS--ARQDLECDKISLERQNKDLK 981
Cdd:COG3096 912 IQQHGKALAQLEPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIFAL-SEVVQRRPhfSYEDAVGLLGENSDLNEKLR 990
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 982 GRLASLEGFQKPS-ASLSQLESQNRELQERLQAEDREKTVLQSTNRKLERRVKELSIQIDDE--------RQHVNDQKDQ 1052
Cdd:COG3096 991 ARLEQAEEARREArEQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEaeerarirRDELHEELSQ 1070
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 229553905 1053 LSLKVKALKRQVDEAEEEIERLDGLRKKAQRELEEQHEANEQLQA---RIRALEKDS 1106
Cdd:COG3096 1071 NRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAgwcAVLRLARDN 1127
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
348-446 |
7.85e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 348 ELAQKVEELQRKLDEEVKKRQVLEPSRL-ELEQQLEEKAEEclrLQELLERQKGEtRQSGTELQNLRLLLDQAGRVRSEL 426
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDEASFERLaELRDELAELEEE---LEALKARWEAE-KELIEEIQELKEELEQRYGKIPEL 490
|
90 100
....*....|....*....|
gi 229553905 427 ETQVMELQDQLKQGPVPAKE 446
Cdd:COG0542 491 EKELAELEEELAELAPLLRE 510
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
492-823 |
7.96e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 40.59 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 492 ASRDQEVEHVRQQCQRDteqlrKSIQDASQDQAALEAERQKMS-------ALVRGLQRELEETSeetghwQTMFQKNKEE 564
Cdd:NF012221 1538 SESSQQADAVSKHAKQD-----DAAQNALADKERAEADRQRLEqekqqqlAAISGSQSQLESTD------QNALETNGQA 1606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 565 LRAAKQEllqlrmEKDEMEEELGEKMEALQRELGQARAgAGGSRQVEELRKLQGEAERVRE-LEQQNLQLQKKTQQLSQD 643
Cdd:NF012221 1607 QRDAILE------ESRAVTKELTTLAQGLDALDSQATY-AGESGDQWRNPFAGGLLDRVQEqLDDAKKISGKQLADAKQR 1679
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 644 -CAEATKARGARMAAEAEAALLVQRRTAVETTLQETQGENDefRRRILGLEQQLKETRGLAEGGEAAEarlrDKLQRLEV 722
Cdd:NF012221 1680 hVDNQQKVKDAVAKSEAGVAQGEQNQANAEQDIDDAKADAE--KRKDDALAKQNEAQQAESDANAAAN----DAQSRGEQ 1753
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 723 EKQRLEEALSEAQAEEGSLAAAKRALEARLEEAQRGLSRMGQEQQALSRALE--EEGKQREALRRGKAELEEQkrlldrt 800
Cdd:NF012221 1754 DASAAENKANQAQADAKGAKQDESDKPNRQGAAGSGLSGKAYSVEGVAEPGShiNPDSPAAADGRFSEGLTEQ------- 1826
|
330 340
....*....|....*....|...
gi 229553905 801 verlnkELEQIgEDSKQALHQLQ 823
Cdd:NF012221 1827 ------EQEAL-EGATNAVNRLQ 1842
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
670-1018 |
8.98e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 670 AVETTLQETQGENDEFRRRILGLEQQLKETRGLAEGGEAAEARLRDKLQRLEVEKQRLEEALSEAQAEEGSLAAAKRALE 749
Cdd:pfam07888 49 AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 750 ARLEEAQRGLSRMGQEQQALSRALEEEGKQREALRRGKAELEEQKRLLDRTVERLNKELEQIGEDSKQALHQLqsqleDY 829
Cdd:pfam07888 129 ARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSL-----AQ 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 830 KEKSRREVADAQRQAKEWASEAEKSSGGLSRLQDETQRLRQTLQASQADLDTARLDKELLAQRLQGLEQEAEKKRRSQDD 909
Cdd:pfam07888 204 RDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQ 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 910 RTRQVK----SLEEKVSRLEMELDEERNTVELLTDRINRSRDQVDQLRTELMQERSARQDLE--------CDKISLERQN 977
Cdd:pfam07888 284 LTLQLAdaslALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEvelgrekdCNRVQLSESR 363
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 229553905 978 KDLKGRLASLEGFQKPSASLsQLESQN-----RELQERLQAEDREK 1018
Cdd:pfam07888 364 RELQELKASLRVAQKEKEQL-QAEKQElleyiRQLEQRLETVADAK 408
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
292-446 |
9.70e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 9.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 292 APPG-SVEHVKAalyGILREgssesdASVRRKVSLVLEQMQPLVMTTGSAKVLAGQGELAQKVEELqRKLDEEVKKrqvL 370
Cdd:COG2433 359 VPPDvDRDEVKA---RVIRG------LSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEI-RRLEEQVER---L 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229553905 371 EPSRLELEQQLEEKAEECLRLQELLERQKGETRQSG----------TELQNLRLLLDQAGRVRSELETQVMELQD----Q 436
Cdd:COG2433 426 EAEVEELEAELEEKDERIERLERELSEARSEERREIrkdreisrldREIERLERELEEERERIEELKRKLERLKElwklE 505
|
170
....*....|
gi 229553905 437 LKQGPVPAKE 446
Cdd:COG2433 506 HSGELVPVKV 515
|
|
| |
