NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|34532515|dbj|BAC86454|]
View 

unnamed protein product [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CSRNP_N super family cl24551
Cysteine/serine-rich nuclear protein N-terminus; This presumed domain is found at the ...
 12-111 1.36e-75

Cysteine/serine-rich nuclear protein N-terminus; This presumed domain is found at the N-terminus of cysteine/serine-rich nuclear proteins. These proteins act as transcriptional activators.


The actual alignment was detected with superfamily member pfam16019:

Pssm-ID: 464977  Cd Length: 218  Bit Score: 232.19  E-value: 1.36e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34532515    12 KKRRALLRASGVKKIDVEEKHELRAIRLSREDCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEF 91
Cdd:pfam16019 119 KQRRALLRAAGVRKIDSEEKDECRAIRLSREDCGCDCRGFCDPETCACSLAGIKCQVDRPSFPCGCTKDGCGNPQGRIEF 198

                          90       100
                  ....*....|....*....|
gi 34532515    92 NPIRVRTHFLHTIMKLELEK 111
Cdd:pfam16019 199 NPTRVRTHFIHTLMRLELEK 218
 
Name Accession Description Interval E-value
CSRNP_N pfam16019
Cysteine/serine-rich nuclear protein N-terminus; This presumed domain is found at the ...
 12-111 1.36e-75

Cysteine/serine-rich nuclear protein N-terminus; This presumed domain is found at the N-terminus of cysteine/serine-rich nuclear proteins. These proteins act as transcriptional activators.


Pssm-ID: 464977  Cd Length: 218  Bit Score: 232.19  E-value: 1.36e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34532515    12 KKRRALLRASGVKKIDVEEKHELRAIRLSREDCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEF 91
Cdd:pfam16019 119 KQRRALLRAAGVRKIDSEEKDECRAIRLSREDCGCDCRGFCDPETCACSLAGIKCQVDRPSFPCGCTKDGCGNPQGRIEF 198

                          90       100
                  ....*....|....*....|
gi 34532515    92 NPIRVRTHFLHTIMKLELEK 111
Cdd:pfam16019 199 NPTRVRTHFIHTLMRLELEK 218
 
Name Accession Description Interval E-value
CSRNP_N pfam16019
Cysteine/serine-rich nuclear protein N-terminus; This presumed domain is found at the ...
 12-111 1.36e-75

Cysteine/serine-rich nuclear protein N-terminus; This presumed domain is found at the N-terminus of cysteine/serine-rich nuclear proteins. These proteins act as transcriptional activators.


Pssm-ID: 464977  Cd Length: 218  Bit Score: 232.19  E-value: 1.36e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34532515    12 KKRRALLRASGVKKIDVEEKHELRAIRLSREDCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEF 91
Cdd:pfam16019 119 KQRRALLRAAGVRKIDSEEKDECRAIRLSREDCGCDCRGFCDPETCACSLAGIKCQVDRPSFPCGCTKDGCGNPQGRIEF 198

                          90       100
                  ....*....|....*....|
gi 34532515    92 NPIRVRTHFLHTIMKLELEK 111
Cdd:pfam16019 199 NPTRVRTHFIHTLMRLELEK 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH