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Conserved domains on  [gi|62087364|dbj|BAD92129|]
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hepatoma-derived growth factor-related protein 2 isoform 1 variant, partial [Homo sapiens]

Protein Classification

PWWP domain-containing protein( domain architecture ID 2155)

PWWP domain-containing protein similar to Homo sapiens hepatoma-derived growth factor that may act as a transcriptional repressor

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PWWP super family cl02554
PWWP (Pro-Trp-Trp-Pro) domain; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, ...
1-39 4.62e-20

PWWP (Pro-Trp-Trp-Pro) domain; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids and is composed of a five-stranded antiparallel beta-barrel followed by a helical region. It is found in numerous proteins that are involved in cell division, growth, and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. PWWP domains specifically recognize DNA and histone methylated lysines at the level of the nucleosome. Based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.


The actual alignment was detected with superfamily member cd20149:

Pssm-ID: 470613 [Multi-domain]  Cd Length: 84  Bit Score: 84.18  E-value: 4.62e-20
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 62087364   1 TAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWEIQNNP 39
Cdd:cd20149  46 TAFLGPKDLFPYDKYKDKYGKPNKRKGFNEGLWEIQNNP 84
 
Name Accession Description Interval E-value
PWWP_HDGFL2 cd20149
PWWP domain found in Hepatoma-derived growth factor-related protein 2 (HDGFL2); HDGFL2, also ...
1-39 4.62e-20

PWWP domain found in Hepatoma-derived growth factor-related protein 2 (HDGFL2); HDGFL2, also called HDGF-related protein 2 (HRP-2), or Hepatoma-derived growth factor 2 (HDGF-2), is involved in cellular growth control, through the regulation of cyclin D1 expression. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438977 [Multi-domain]  Cd Length: 84  Bit Score: 84.18  E-value: 4.62e-20
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 62087364   1 TAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWEIQNNP 39
Cdd:cd20149  46 TAFLGPKDLFPYDKYKDKYGKPNKRKGFNEGLWEIQNNP 84
 
Name Accession Description Interval E-value
PWWP_HDGFL2 cd20149
PWWP domain found in Hepatoma-derived growth factor-related protein 2 (HDGFL2); HDGFL2, also ...
1-39 4.62e-20

PWWP domain found in Hepatoma-derived growth factor-related protein 2 (HDGFL2); HDGFL2, also called HDGF-related protein 2 (HRP-2), or Hepatoma-derived growth factor 2 (HDGF-2), is involved in cellular growth control, through the regulation of cyclin D1 expression. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438977 [Multi-domain]  Cd Length: 84  Bit Score: 84.18  E-value: 4.62e-20
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 62087364   1 TAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWEIQNNP 39
Cdd:cd20149  46 TAFLGPKDLFPYDKYKDKYGKPNKRKGFNEGLWEIQNNP 84
PWWP_HDGF cd20148
PWWP domain found in Hepatoma-derived growth factor (HDGF); HDGF, also called high mobility ...
1-39 1.53e-18

PWWP domain found in Hepatoma-derived growth factor (HDGF); HDGF, also called high mobility group protein 1-like 2 (HMG-1L2), is a heparin-binding protein that acts as a transcriptional repressor with mitogenic activity for fibroblasts. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438976 [Multi-domain]  Cd Length: 87  Bit Score: 80.07  E-value: 1.53e-18
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 62087364   1 TAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWEIQNNP 39
Cdd:cd20148  46 TAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNP 84
PWWP_HRP cd05834
PWWP domain found in hepatoma-derived growth factor (HDGF)-related protein (HRP) family; The ...
1-38 2.40e-18

PWWP domain found in hepatoma-derived growth factor (HDGF)-related protein (HRP) family; The HRP family includes hepatoma-derived growth factor (HDGF), and HDGF-related proteins (HRPs). HDGF, also called high mobility group protein 1-like 2 (HMG-1L2), is a heparin-binding protein that acts as a transcriptional repressor with mitogenic activity for fibroblasts. It is a prognostic factor in several types of cancer. HDGFL1 is also called PWWP domain-containing protein 1 (PWWP1). Its biological function remains unclear. HDGFL2, also called HDGF-related protein 2 (HRP-2), or hepatoma-derived growth factor 2 (HDGF-2), is involved in cellular growth control, through the regulation of cyclin D1 expression. HDGFL3, also called HDGF-related protein 3 (HRP-3), enhances DNA synthesis and may play a role in cell proliferation. The family also includes PC4 and SFRS1-interacting protein (PSIP) and similar proteins. PSIP, also called CLL-associated antigen KW-7, dense fine speckles 70 kDa protein (DFS 70), lens epithelium-derived growth factor (LEDGF), or transcriptional coactivator p75/p52, acts as a transcriptional coactivator involved in neuroepithelial stem cell differentiation and neurogenesis. Members of the HRP family contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438959 [Multi-domain]  Cd Length: 82  Bit Score: 79.52  E-value: 2.40e-18
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 62087364   1 TAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWEIQNN 38
Cdd:cd05834  45 TAFLKPKDLFPYEENKEKYGKPRKRKGFNEGLWEIENN 82
PWWP_PSIP cd20151
PWWP domain found in PC4 and SFRS1-interacting protein (PSIP); PSIP, also called ...
1-43 3.00e-18

PWWP domain found in PC4 and SFRS1-interacting protein (PSIP); PSIP, also called CLL-associated antigen KW-7, dense fine speckles 70 kDa protein (DFS 70), lens epithelium-derived growth factor (LEDGF), or transcriptional coactivator p75/p52, acts as a transcriptional coactivator involved in neuroepithelial stem cell differentiation and neurogenesis. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438979 [Multi-domain]  Cd Length: 88  Bit Score: 79.26  E-value: 3.00e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 62087364   1 TAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWEIQNNPHASY 43
Cdd:cd20151  46 TAFLGPKDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKF 88
PWWP_HDGFL3 cd20150
PWWP domain found in Hepatoma-derived growth factor-related protein 3 (HDGFL3); HDGFL3, also ...
1-43 1.87e-14

PWWP domain found in Hepatoma-derived growth factor-related protein 3 (HDGFL3); HDGFL3, also called HDGF-related protein 3 (HRP-3), is the only hepatoma-derived growth factor (HDGF)-related protein (HRP) family member whose expression is almost restricted to the nervous tissue. It enhances DNA synthesis and may play a role in cell proliferation. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438978 [Multi-domain]  Cd Length: 93  Bit Score: 68.94  E-value: 1.87e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 62087364   1 TAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWEIQNNPHASY 43
Cdd:cd20150  51 TAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKF 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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