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Conserved domains on  [gi|2010057926|emb|CAF3788404|]
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unnamed protein product [Rotaria magnacalcarata]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 17800360)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  21153002|10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
498-745 5.24e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 157.09  E-value: 5.24e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 498 PDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIyrqtlAPDHsslAISYNNIGLVHTQMGDYSKALASHQKALEIElssl 577
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPDD---AEALYNLGLAYLRLGRYEEALADYEQALELD---- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 578 penhPHLAVSYNNIGLVYKNMGEYEKALESYENALEIErktlpsnhPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIy 657
Cdd:COG0457    73 ----PDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 658 qktlpalHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERA 737
Cdd:COG0457   140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212


                  ....*...
gi 2010057926 738 LEIRQKSL 745
Cdd:COG0457   213 ILTLAALA 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
663-879 7.17e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 136.29  E-value: 7.17e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 663 ALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGEYSKALASQERALEIRq 742
Cdd:COG0457     2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD--------PDDAEALYNLGLAYLRLGRYEEALADYEQALELD- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 743 kslpPGHrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlppnhPDLATTFNNLGLVYDNKKEYETALSFHKQAL 822
Cdd:COG0457    73 ----PDD---AEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERAL 137

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 823 EIyekalspnHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKNHLDLA 879
Cdd:COG0457   138 EL--------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEA 186
TPR_12 pfam13424
Tetratricopeptide repeat;
459-533 7.94e-22

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 90.14  E-value: 7.94e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEKFLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQ 533
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
425-491 6.32e-10

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 6.32e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2010057926 425 WHRLGMLLIKLGKFDKAEQVYNALFDFNMA-----HNEKALLHHQLGLIKRNQGDYEEALASYEKALAIYEK 491
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
VIP2 super family cl00173
VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative ...
 244-389 5.40e-05

VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative insecticidal proteins (VIPs) possesses high specificity against the major insect pest, corn rootworms, and belongs to a classs of binary toxins and regulators of biological pathways distinct from classical A-B toxins. A novel family of insecticidal ADP-ribosyltransferses were isolated from Bacillus cereus during vegetative growth, where VIP1 likely targets insect cells and VIP2 ribosylates actin. VIP2 shares significant sequence similarity with enzymatic components of other binary toxins, Clostridium botulinum C2 toxin, C. perfringens iota toxin, C. piroforme toxin, C. piroforme toxin and C. difficile toxin.


The actual alignment was detected with superfamily member pfam03496:

Pssm-ID: 469640 [Multi-domain]  Cd Length: 199  Bit Score: 45.05  E-value: 5.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 244 LNRALRTHEVDTIIKMGffiQDLHRQIEQLHKEQSNDQQKRSFIVYRGQGMS--KGEFEKLVRAKG-----GLMSFNS-- 314
Cdd:pfam03496  35 INNYLRQNKGDINGLDA---SDLEKKIKNIDSAFSKSPIPENIIVYRRVGEDyfGLDGGLPLNNNGtineeLVSAFKEkf 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 315 ---------FLSTSKKRKVSLEFSRDAlnnvdaigILFKmiiepsnLSTPF----ALIDDVSYFTSEQEILF---SMHTV 378
Cdd:pfam03496 112 egkvkteygYMSTSLVSDVAASFGGRP--------IILR-------ITVPKgtkgAYISPLSGYPGEQEVLLprgSTYKI 176

                         170
                  ....*....|.
gi 2010057926 379 FRIGEIKQIDN 389
Cdd:pfam03496 177 NKITIVESKGH 187
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
498-745 5.24e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 157.09  E-value: 5.24e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 498 PDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIyrqtlAPDHsslAISYNNIGLVHTQMGDYSKALASHQKALEIElssl 577
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPDD---AEALYNLGLAYLRLGRYEEALADYEQALELD---- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 578 penhPHLAVSYNNIGLVYKNMGEYEKALESYENALEIErktlpsnhPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIy 657
Cdd:COG0457    73 ----PDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 658 qktlpalHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERA 737
Cdd:COG0457   140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212


                  ....*...
gi 2010057926 738 LEIRQKSL 745
Cdd:COG0457   213 ILTLAALA 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
663-879 7.17e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 136.29  E-value: 7.17e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 663 ALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGEYSKALASQERALEIRq 742
Cdd:COG0457     2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD--------PDDAEALYNLGLAYLRLGRYEEALADYEQALELD- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 743 kslpPGHrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlppnhPDLATTFNNLGLVYDNKKEYETALSFHKQAL 822
Cdd:COG0457    73 ----PDD---AEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERAL 137

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 823 EIyekalspnHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKNHLDLA 879
Cdd:COG0457   138 EL--------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEA 186
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 461-835 6.51e-35

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 143.52  E-value: 6.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 461 LHHQLGLIKRNQGDYEEALASYEKALAIYEKFLPTD--HPD-LATSyNNIGQVYNNMGEYEKALSFYEKSLEIYRQTLAP 537
Cdd:NF040586  436 LRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHtLMTA-GGLGADLRALGRFREALELDEETLERHRRVFGE 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 538 DHSSLAISYNNIGLVHTQMGDYSKALASHQKALEIELSSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIERK 617
Cdd:NF040586  515 DHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYRE 594

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 618 TL-PSNHP-------SLAssfnnIGLLHDnmGDYSKALEFYEKTLEIYQKTLPALHPD---LAISYNNIGSVyknLGEYS 686
Cdd:NF040586  595 VLgGPDHPdtlraakSLA-----VALRRA--GRLEEALELAEDTYERYRRRFGPDHPDtlaAALSLANDLRA---LGDAD 664

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 687 KALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERALEIRQKSLPPGHRILATSYNNLGSVYDAM 766
Cdd:NF040586  665 EARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYTLAAAVNLANDLAAL 744

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926 767 GQYLEAISyyEKTLEIERATL------PPNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEIYEKALSPNHPD 835
Cdd:NF040586  745 GDLDAALG--EEALERLRRLLgedlraGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPD 817
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 428-866 5.64e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 105.55  E-value: 5.64e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 428 LGMLLIKLGKFDKAEqvynALFDFNMAHN-EKALLHHQLGLIKRNQGDYEEALASYE----------------------- 483
Cdd:TIGR02917 369 LGEAYLALGDFEKAA----EYLAKATELDpENAAARTQLGISKLSQGDPSEAIADLEtaaqldpelgradlllilsylrs 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 484 ----KALAIYEKfLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIyrqtlAPDHSSLAISYNNIglvHTQMGDY 559
Cdd:TIGR02917 445 gqfdKALAAAKK-LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI-----EPDFFPAAANLARI---DIQEGNP 515

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 560 SKALASHQKALEIelssLPENHP-HLAVS--YNNIGLVYKNMGEYEKALESYENALEIeRKTLPSNHPSLASSFNNIGLL 636
Cdd:TIGR02917 516 DDAIQRFEKVLTI----DPKNLRaILALAglYLRTGNEEEAVAWLEKAAELNPQEIEP-ALALAQYYLGKGQLKKALAIL 590

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 637 HDNMGDYSKALEFYE-------------KTLEIYQKtLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEE--- 700
Cdd:TIGR02917 591 NEAADAAPDSPEAWLmlgraqlaagdlnKAVSSFKK-LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPdnt 669

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 701 -----------------------KTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERALEI---------------RQ 742
Cdd:TIGR02917 670 eaqiglaqlllaakrtesakkiaKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRapssqnaiklhrallAS 749

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 743 KSLPPGHRILATSYNN----------LGSVYDAMGQYLEAISYYEKTLEIeratlppnHPDLATTFNNLGLVYDNKKEYE 812
Cdd:TIGR02917 750 GNTAEAVKTLEAWLKThpndavlrtaLAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR 821

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2010057926 813 talsfhkqALEIYEKA--LSPNHPDLANCYNSIastYQKTQDNTNALLFYRKALEI 866
Cdd:TIGR02917 822 --------ALEYAERAlkLAPNIPAILDTLGWL---LVEKGEADRALPLLRKAVNI 866
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 599-840 1.50e-22

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 104.23  E-value: 1.50e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 599 GEYEKALESYENALEIERKTLPSNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLP--ALHPDLAISYNNIG 676
Cdd:NF040586  406 GDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGlgEDHPHTLMTAGGLG 485

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 677 SVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERALEIRQKSLPPGHRILATSY 756
Cdd:NF040586  486 ADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSA 565

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 757 NNLGSVYDAMGQYLEAISYYEKTLEIERATL-PPNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEIYEKALSPNHPD 835
Cdd:NF040586  566 NNLARDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPD 645

                         250
                  ....*....|..
gi 2010057926 836 -------LANCY 840
Cdd:NF040586  646 tlaaalsLANDL 657
TPR_12 pfam13424
Tetratricopeptide repeat;
459-533 7.94e-22

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 90.14  E-value: 7.94e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEKFLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQ 533
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 555-844 2.65e-21

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 99.99  E-value: 2.65e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 555 QMGDYSKALASHQKALEIELSSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIERKTLP--SNHPSLASSFNN 632
Cdd:NF040586  404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGlgEDHPHTLMTAGG 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 633 IGLLHDNMGDYSKALEFYEKTLEIYQKTLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAI 712
Cdd:NF040586  484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 713 SHSNIGILYNNMGEYSKALASQERALE-IRQKSLPPGHRILATSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPPNH 791
Cdd:NF040586  564 SANNLARDLRELGRYAEALDLLEEALErYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDH 643

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 792 PD-LATTFNnLGLVYDNKKEYETALSFHKQALEIYEKALSPNHPDLANCYNSIA 844
Cdd:NF040586  644 PDtLAAALS-LANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLA 696
TPR_12 pfam13424
Tetratricopeptide repeat;
499-572 1.86e-20

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 86.29  E-value: 1.86e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 499 DLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQTLAPDHSSLAISYNNIGLVHTQMGDYSKALASHQKALEI 572
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_12 pfam13424
Tetratricopeptide repeat;
752-827 2.07e-20

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 86.29  E-value: 2.07e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2010057926 752 LATSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPPNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEIYEK 827
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 413-793 1.39e-17

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 88.05  E-value: 1.39e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 413 ERMREeTRGSTGWHR--------LGMLLIKLGKFDKA----EQVYNALFD-FNMAHNEKALLHHQLGLIKRNQGDYEEAL 479
Cdd:NF040586  462 ERQRR-VLGLGEDHPhtlmtaggLGADLRALGRFREAleldEETLERHRRvFGEDHPRTLRAANNLAVSLRLLGDYREAL 540

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 480 ASYEKALAIYEKFLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQTLAPDHsslaisynniglvhtqmgdy 559
Cdd:NF040586  541 ELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLGGPD-------------------- 600

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 560 skalasHQKALEIELSslpenhphLAVSYNNIglvyknmGEYEKALESYENALEIERKTLPSNHP-SLASSFNNIGLLHD 638
Cdd:NF040586  601 ------HPDTLRAAKS--------LAVALRRA-------GRLEEALELAEDTYERYRRRFGPDHPdTLAAALSLANDLRA 659

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 639 nMGDYSKALEFYEKTLEIYQKTLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPH-L--AISHS 715
Cdd:NF040586  660 -LGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYtLaaAVNLA 738

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 716 NIgilYNNMGEYSKALAsqERALEIRQKSLPPGHRILATSY------NNLGSVYDAMGQYLEAISYYEKTLEIERATLPP 789
Cdd:NF040586  739 ND---LAALGDLDAALG--EEALERLRRLLGEDLRAGPDHPdtlacaANLALDLRATGRTEEAEELRADTLARLRRVLGP 813


                  ....
gi 2010057926 790 NHPD 793
Cdd:NF040586  814 DHPD 817
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 406-544 7.09e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 69.26  E-value: 7.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 406 QQIIALTERMREETRGSTGWHRLGMLLIKLGKFDKAEQVYNALFDFNmahNEKALLHHQLGLIKRNQGDYEEALASYEKA 485
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD---PDNADALLDLAEALLAAGDTEEAEELLERA 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 486 LAIyekflptdHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHSSLAI 544
Cdd:COG4235    78 LAL--------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA-----LLPADAPARL 123
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 585-687 5.24e-10

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 59.30  E-value: 5.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 585 AVSYNNIGLVYKNMGEYEKALESYENALEIErktlpSNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktlpaL 664
Cdd:PRK02603   35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--------L 101

                          90       100
                  ....*....|....*....|...
gi 2010057926 665 HPDLAISYNNIGSVYKNLGEYSK 687
Cdd:PRK02603  102 NPKQPSALNNIAVIYHKRGEKAE 124
TPR_12 pfam13424
Tetratricopeptide repeat;
425-491 6.32e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 6.32e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2010057926 425 WHRLGMLLIKLGKFDKAEQVYNALFDFNMA-----HNEKALLHHQLGLIKRNQGDYEEALASYEKALAIYEK 491
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 767-877 6.87e-07

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.44  E-value: 6.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 767 GQYLEAISYYEKTLEIERatlppNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEiyekaLSPNHPdlaNCYNSIAST 846
Cdd:PRK02603   49 GEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-----LNPKQP---SALNNIAVI 115

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2010057926 847 YQK-------TQDNTNALLFYRKALE-----IRLKslPKNHLD 877
Cdd:PRK02603  116 YHKrgekaeeAGDQDEAEALFDKAAEywkqaIRLA--PNNYIE 156
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 585-617 1.25e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 45.52  E-value: 1.25e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2010057926  585 AVSYNNIGLVYKNMGEYEKALESYENALEIERK 617
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 725-885 2.02e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.84  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 725 GEYSKALASQERALEIRQKSLPPGHRILATSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPP--NHPDLATTFNNLG 802
Cdd:NF040586  406 GDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLgeDHPHTLMTAGGLG 485

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 803 LVYDNKKEYETALSFHKQALEIYEKALSPNHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKNHLDLATSF 882
Cdd:NF040586  486 ADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSA 565


                  ...
gi 2010057926 883 TNL 885
Cdd:NF040586  566 NNL 568
ADPrib_exo_Tox pfam03496
ADP-ribosyltransferase exoenzyme; This is a family of bacterial and viral bi-glutamic acid ...
 244-389 5.40e-05

ADP-ribosyltransferase exoenzyme; This is a family of bacterial and viral bi-glutamic acid ADP-ribosyltransferases, where, in Swiss:Q93Q17, E403 is the catalytic residue and E401 contributes to the transfer of ADP-ribose to the target protein. In clostridial species it is actin that is being ADP-ribosylated; this result is lethal and dermonecrotic in infected mammals.


Pssm-ID: 427336 [Multi-domain]  Cd Length: 199  Bit Score: 45.05  E-value: 5.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 244 LNRALRTHEVDTIIKMGffiQDLHRQIEQLHKEQSNDQQKRSFIVYRGQGMS--KGEFEKLVRAKG-----GLMSFNS-- 314
Cdd:pfam03496  35 INNYLRQNKGDINGLDA---SDLEKKIKNIDSAFSKSPIPENIIVYRRVGEDyfGLDGGLPLNNNGtineeLVSAFKEkf 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 315 ---------FLSTSKKRKVSLEFSRDAlnnvdaigILFKmiiepsnLSTPF----ALIDDVSYFTSEQEILF---SMHTV 378
Cdd:pfam03496 112 egkvkteygYMSTSLVSDVAASFGGRP--------IILR-------ITVPKgtkgAYISPLSGYPGEQEVLLprgSTYKI 176

                         170
                  ....*....|.
gi 2010057926 379 FRIGEIKQIDN 389
Cdd:pfam03496 177 NKITIVESKGH 187
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 453-651 5.54e-05

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 46.03  E-value: 5.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 453 MAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIY-----------------EKFLPTDHPDLA-TSYNNIGQVYnNM 514
Cdd:cd15832     6 MAKAEKKLKGSGGFFFGSGGSKYEEAAELYEKAANAFklaknweeagdaflkaaECQLKLDSKHDAaNAYVEAAKCY-KK 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 515 GEYEKALSFYEKSLEIY----RQTLAPDHsslaisYNNIG-LVHTQMGDYSKALASHQKALEIELSslpENHPHLAVS-Y 588
Cdd:cd15832    85 VDPQEAVNCLEKAIEIYtemgRFRQAAKH------LKEIAeLYENELGDLDKAIEAYEQAADYYEG---EGANSLANKcY 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2010057926 589 NNIGLVYKNMGEYEKALESYEnalEIERKTLPSN--HPSLASSFNNIGLLHDNMGDY---SKALEFYE 651
Cdd:cd15832   156 LKVADLAAQLEDYDKAIEIYE---QVARSSLENNllKYSAKDYFLKAGLCHLAAGDVvaaQRALEKYA 220
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 425-489 1.71e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 1.71e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926 425 WHRLGMLLIKLGKFDKAEQVYNALFDFNMAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIY 489
Cdd:COG1729    33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKY 97
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 753-784 3.34e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.97  E-value: 3.34e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2010057926  753 ATSYNNLGSVYDAMGQYLEAISYYEKTLEIER 784
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 459-492 6.38e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 6.38e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2010057926  459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEKF 492
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
VIP2 cd00233
VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative ...
 265-384 4.53e-03

VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative insecticidal proteins (VIPs) possesses high specificity against the major insect pest, corn rootworms, and belongs to a classs of binary toxins and regulators of biological pathways distinct from classical A-B toxins. A novel family of insecticidal ADP-ribosyltransferses were isolated from Bacillus cereus during vegetative growth, where VIP1 likely targets insect cells and VIP2 ribosylates actin. VIP2 shares significant sequence similarity with enzymatic components of other binary toxins, Clostridium botulinum C2 toxin, C. perfringens iota toxin, C. piroforme toxin, C. piroforme toxin and C. difficile toxin.


Pssm-ID: 238144 [Multi-domain]  Cd Length: 201  Bit Score: 39.31  E-value: 4.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 265 DLHRQIEQLHKEQSNDQQKRSFIVYRGQGM-----------------SKGEFEKLVraKGGLMSFNSFLSTS-------K 320
Cdd:cd00233    63 ELDKQIENIDSAFKKKPIPENITVYRGVDMtylglifqstdgtinktVNKQFEAKF--LGKIYKDDGFMSTSlvsesafG 140

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 321 KRKVSLEFSRDAlnnvDAIGilfkmiiepsnlstpfALIDDVSYFTSEQEILFSMHTVFRIGEI 384
Cdd:cd00233   141 GRPIILRLTVPK----GSKG----------------AYISPISGFPGELEVLLPRGSTYKINKI 184
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 788-866 5.91e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 39.63  E-value: 5.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 788 PPNHPDLATTFN---------NLGLVYDNKKEYETALSFHKQALEIyekalspnHPDLANCYNSIASTYQKTQDNTNALL 858
Cdd:TIGR02521  15 TPDVPRSSRTTDrnkaakirvQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAED 86


                  ....*...
gi 2010057926 859 FYRKALEI 866
Cdd:TIGR02521  87 SFRRALTL 94
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 456-538 6.32e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 38.50  E-value: 6.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 456 NEKALLHHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMGEY-------EKALSFYEKSL 528
Cdd:PRK02603   69 NDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------NPKQPSALNNIAVIYHKRGEKaeeagdqDEAEALFDKAA 140

                          90
                  ....*....|..
gi 2010057926 529 EIYRQT--LAPD 538
Cdd:PRK02603  141 EYWKQAirLAPN 152
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
498-745 5.24e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 157.09  E-value: 5.24e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 498 PDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIyrqtlAPDHsslAISYNNIGLVHTQMGDYSKALASHQKALEIElssl 577
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPDD---AEALYNLGLAYLRLGRYEEALADYEQALELD---- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 578 penhPHLAVSYNNIGLVYKNMGEYEKALESYENALEIErktlpsnhPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIy 657
Cdd:COG0457    73 ----PDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 658 qktlpalHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERA 737
Cdd:COG0457   140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212


                  ....*...
gi 2010057926 738 LEIRQKSL 745
Cdd:COG0457   213 ILTLAALA 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
459-664 6.25e-42

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 154.01  E-value: 6.25e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIyrqtlAPD 538
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-----DPD 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 539 HsslAISYNNIGLVHTQMGDYSKALASHQKALEIElsslpenhPHLAVSYNNIGLVYKNMGEYEKALESYENALEIErkt 618
Cdd:COG0457    75 D---AEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALELD--- 140

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2010057926 619 lpsnhPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLPAL 664
Cdd:COG0457   141 -----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAA 181
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
582-829 1.72e-40

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 149.77  E-value: 1.72e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 582 PHLAVSYNNIGLVYKNMGEYEKALESYENALEIErktlpsnhPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIyqktl 661
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD--------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 662 palHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGEYSKALASQERALEIR 741
Cdd:COG0457    72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALELD 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 742 qkslpPGHrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPPNHPDLATTFNNLGLVYDNKKEYETALSFHKQA 821
Cdd:COG0457   141 -----PDD---ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212


                  ....*...
gi 2010057926 822 LEIYEKAL 829
Cdd:COG0457   213 ILTLAALA 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
425-669 3.45e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 137.45  E-value: 3.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 425 WHRLGMLLIKLGKFDKAEQVYNALFDFNmahNEKALLHHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSY 504
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELD---PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 505 NNIGQVYNNMGEYEKALSFYEKSLEIyrqtlAPDHsslAISYNNIGLVHTQMGDYSKALASHQKALEIElsslpenhPHL 584
Cdd:COG0457    80 NNLGLALQALGRYEEALEDYDKALEL-----DPDD---AEALYNLGLALLELGRYDEAIEAYERALELD--------PDD 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 585 AVSYNNIGLVYKNMGEYEKALESYENALEIERKTLPSNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLPAL 664
Cdd:COG0457   144 ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELL 223


                  ....*
gi 2010057926 665 HPDLA 669
Cdd:COG0457   224 LLALA 228
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
663-879 7.17e-36

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 136.29  E-value: 7.17e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 663 ALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGEYSKALASQERALEIRq 742
Cdd:COG0457     2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD--------PDDAEALYNLGLAYLRLGRYEEALADYEQALELD- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 743 kslpPGHrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlppnhPDLATTFNNLGLVYDNKKEYETALSFHKQAL 822
Cdd:COG0457    73 ----PDD---AEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERAL 137

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 823 EIyekalspnHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKNHLDLA 879
Cdd:COG0457   138 EL--------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEA 186
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 461-835 6.51e-35

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 143.52  E-value: 6.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 461 LHHQLGLIKRNQGDYEEALASYEKALAIYEKFLPTD--HPD-LATSyNNIGQVYNNMGEYEKALSFYEKSLEIYRQTLAP 537
Cdd:NF040586  436 LRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHtLMTA-GGLGADLRALGRFREALELDEETLERHRRVFGE 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 538 DHSSLAISYNNIGLVHTQMGDYSKALASHQKALEIELSSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIERK 617
Cdd:NF040586  515 DHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYRE 594

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 618 TL-PSNHP-------SLAssfnnIGLLHDnmGDYSKALEFYEKTLEIYQKTLPALHPD---LAISYNNIGSVyknLGEYS 686
Cdd:NF040586  595 VLgGPDHPdtlraakSLA-----VALRRA--GRLEEALELAEDTYERYRRRFGPDHPDtlaAALSLANDLRA---LGDAD 664

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 687 KALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERALEIRQKSLPPGHRILATSYNNLGSVYDAM 766
Cdd:NF040586  665 EARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYTLAAAVNLANDLAAL 744

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926 767 GQYLEAISyyEKTLEIERATL------PPNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEIYEKALSPNHPD 835
Cdd:NF040586  745 GDLDAALG--EEALERLRRLLgedlraGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPD 817
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 424-741 1.14e-33

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 131.00  E-value: 1.14e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 424 GWHRLGMLLIKLGKFDKAEQVYNALFDfnmAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATS 503
Cdd:COG2956    10 GWYFKGLNYLLNGQPDKAIDLLEEALE---LDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRAEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 504 YNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHSSlaiSYNNIGLVHTQMGDYSKALASHQKALEIelsslpenHPH 583
Cdd:COG2956    79 LLELAQDYLKAGLLDRAEELLEKLLE-----LDPDDAE---ALRLLAEIYEQEGDWEKAIEVLERLLKL--------GPE 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 584 LAVSYNNIGLVYKNMGEYEKALESYENALEIerktlpsnHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIyqktlpa 663
Cdd:COG2956   143 NAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALEQ------- 207

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2010057926 664 lHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlPSNHPHLAISHsnigiLYNNMGEYSKALASQERALEIR 741
Cdd:COG2956   208 -DPDYLPALPRLAELYEKLGDPEEALELLRKALELD----PSDDLLLALAD-----LLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 549-867 2.08e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 109.82  E-value: 2.08e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 549 IGLVHTQMGDYSKALA-----SHQKALEiELSSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIErktlpsnh 623
Cdd:COG2956     2 LLPVAAALGWYFKGLNyllngQPDKAID-LLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD-------- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 624 PSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLPALHpdlaisynNIGSVYKNLGEYSKALVFYEKTLDIeektl 703
Cdd:COG2956    73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALR--------LLAEIYEQEGDWEKAIEVLERLLKL----- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 704 psnHPHLAISHSNIGILYNNMGEYSKALASQERALEIRQKSLPpghrilatSYNNLGSVYDAMGQYLEAISYYEKTLEIE 783
Cdd:COG2956   140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR--------ALLLLAELYLEQGDYEEAIAALERALEQD 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 784 ratlppnhPDLATTFNNLGLVYDNKKEYETALSFHKQALEIYekalsPNHPDLANcynsIASTYQKTQDNTNALLFYRKA 863
Cdd:COG2956   209 --------PDYLPALPRLAELYEKLGDPEEALELLRKALELD-----PSDDLLLA----LADLLERKEGLEAALALLERQ 271


                  ....
gi 2010057926 864 LEIR 867
Cdd:COG2956   272 LRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 386-614 2.58e-26

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 115.48  E-value: 2.58e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 386 QIDNIDRLYQVELKLASIKNQQIIALTERMREETRGSTGWHRLGMLLIKLGKFDKAEQVYNALFDFNMAHNEKALLHHQL 465
Cdd:COG3914     5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 466 GLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHsslAIS 545
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALA-----LNPDF---AEA 148

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 546 YNNIGLVHTQMGDYSKALASHQKALEIElsslpenhPHLAVSYNNIGLVYKNMGEYEKALESYENALEI 614
Cdd:COG3914   149 YLNLGEALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 428-866 5.64e-23

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 105.55  E-value: 5.64e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 428 LGMLLIKLGKFDKAEqvynALFDFNMAHN-EKALLHHQLGLIKRNQGDYEEALASYE----------------------- 483
Cdd:TIGR02917 369 LGEAYLALGDFEKAA----EYLAKATELDpENAAARTQLGISKLSQGDPSEAIADLEtaaqldpelgradlllilsylrs 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 484 ----KALAIYEKfLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIyrqtlAPDHSSLAISYNNIglvHTQMGDY 559
Cdd:TIGR02917 445 gqfdKALAAAKK-LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI-----EPDFFPAAANLARI---DIQEGNP 515

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 560 SKALASHQKALEIelssLPENHP-HLAVS--YNNIGLVYKNMGEYEKALESYENALEIeRKTLPSNHPSLASSFNNIGLL 636
Cdd:TIGR02917 516 DDAIQRFEKVLTI----DPKNLRaILALAglYLRTGNEEEAVAWLEKAAELNPQEIEP-ALALAQYYLGKGQLKKALAIL 590

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 637 HDNMGDYSKALEFYE-------------KTLEIYQKtLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEE--- 700
Cdd:TIGR02917 591 NEAADAAPDSPEAWLmlgraqlaagdlnKAVSSFKK-LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPdnt 669

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 701 -----------------------KTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERALEI---------------RQ 742
Cdd:TIGR02917 670 eaqiglaqlllaakrtesakkiaKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRapssqnaiklhrallAS 749

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 743 KSLPPGHRILATSYNN----------LGSVYDAMGQYLEAISYYEKTLEIeratlppnHPDLATTFNNLGLVYDNKKEYE 812
Cdd:TIGR02917 750 GNTAEAVKTLEAWLKThpndavlrtaLAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR 821

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2010057926 813 talsfhkqALEIYEKA--LSPNHPDLANCYNSIastYQKTQDNTNALLFYRKALEI 866
Cdd:TIGR02917 822 --------ALEYAERAlkLAPNIPAILDTLGWL---LVEKGEADRALPLLRKAVNI 866
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 459-744 1.05e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 104.30  E-value: 1.05e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEkflptDHPDLATSYNNIGQVYNNMGEYEKALSFYEksLEIYRQTLAPD 538
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAEL-----EAAALAAALGLALLLLAALAEAAAAALLAL--AAGEAAAAAAA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 539 HSSLAISYNNIGLVHTQMGDYSKALASHQKALEIelsslpenHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIerkt 618
Cdd:COG3914    74 LLLLAALLELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL---- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 619 lpsnHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktlpaLHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDI 698
Cdd:COG3914   142 ----NPDFAEAYLNLGEALRRLGRLEEAIAALRRALE--------LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2010057926 699 eektlpsnHPHLAISHSNIGILYNNMGEYSKALASQERALEIRQKS 744
Cdd:COG3914   210 --------DPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 599-840 1.50e-22

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 104.23  E-value: 1.50e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 599 GEYEKALESYENALEIERKTLPSNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLP--ALHPDLAISYNNIG 676
Cdd:NF040586  406 GDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGlgEDHPHTLMTAGGLG 485

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 677 SVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERALEIRQKSLPPGHRILATSY 756
Cdd:NF040586  486 ADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSA 565

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 757 NNLGSVYDAMGQYLEAISYYEKTLEIERATL-PPNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEIYEKALSPNHPD 835
Cdd:NF040586  566 NNLARDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPD 645

                         250
                  ....*....|..
gi 2010057926 836 -------LANCY 840
Cdd:NF040586  646 tlaaalsLANDL 657
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
752-907 1.78e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.77  E-value: 1.78e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 752 LATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlppnhPDLATTFNNLGLVYDNKKEYETALSFHKQALEIyekalsp 831
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD--------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2010057926 832 nHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRlkslPKNhldlATSFTNLWQLYQTMNDNVQAFSVYQQSLA 907
Cdd:COG0457    72 -DPDDAEALNNLGLALQALGRYEEALEDYDKALELD----PDD----AEALYNLGLALLELGRYDEAIEAYERALE 138
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 599-937 3.33e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 102.38  E-value: 3.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 599 GEYEKALESYENALEIER-KTLPSNHPSLASSFNNIGLLHDNMGDYSKALEFYEktLEIYQKTLPALHPDLAISYnnigs 677
Cdd:COG3914    15 AALLAAAAAAELALAAELeAAALAAALGLALLLLAALAEAAAAALLALAAGEAA--AAAAALLLLAALLELAALL----- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 678 vYKNLGEYSKALVFYEKTLDIeektlpsnHPHLAISHSNIGILYNNMGEYSKALASQERALEIRqkslpPGHrilATSYN 757
Cdd:COG3914    88 -LQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALALN-----PDF---AEAYL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 758 NLGSVYDAMGQYLEAISYYEKTLEIEratlppnhPDLATTFNNLGLVYDNKKEYETALSFHKQALEIyekalspnHPDLA 837
Cdd:COG3914   151 NLGEALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL--------DPDNA 214

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 838 NCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKNHLDLATSFTN----LWQLYQTMNDNVQA-----FSVYQQSLAN 908
Cdd:COG3914   215 DAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDdpaeLLALARAWAQLVAAaaapeLPPPPNPRDP 294

                         330       340       350
                  ....*....|....*....|....*....|....
gi 2010057926 909 QDKI----VSSD-CLDAVqtYKAIEQVFEHQDQS 937
Cdd:COG3914   295 DRKLrigyVSADfRRHAV--GYLLEPLLEHHDRS 326
TPR_12 pfam13424
Tetratricopeptide repeat;
459-533 7.94e-22

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 90.14  E-value: 7.94e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEKFLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQ 533
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 457-615 1.31e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.79  E-value: 1.31e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 457 EKALLHHQLGLIKRNQGDYEEALASYEKALAIYekflptdhPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLA 536
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELD--------PDNPEAFALLGEILLQLGDLDEAIVLLHEALE-----LD 68

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 537 PDHSSLaisYNNIGLVHTQMGDYSKALASHQKALEIElsslpENHPHLavsYNNIGLVYKNMGEYEKALESYENALEIE 615
Cdd:COG4783    69 PDEPEA---RLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 425-573 2.17e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.02  E-value: 2.17e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 425 WHRLGMLLIKLGKFDKAEQVYNALFDfnmAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSY 504
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALE---LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPEAR 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 505 NNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHsslAISYNNIGLVHTQMGDYSKALASHQKALEIE 573
Cdd:COG4783    76 LNLGLALLKAGDYDEALALLEKALK-----LDPEH---PEAYLRLARAYRALGRPDEAIAALEKALELD 136
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 555-844 2.65e-21

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 99.99  E-value: 2.65e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 555 QMGDYSKALASHQKALEIELSSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIERKTLP--SNHPSLASSFNN 632
Cdd:NF040586  404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGlgEDHPHTLMTAGG 483

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 633 IGLLHDNMGDYSKALEFYEKTLEIYQKTLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAI 712
Cdd:NF040586  484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 713 SHSNIGILYNNMGEYSKALASQERALE-IRQKSLPPGHRILATSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPPNH 791
Cdd:NF040586  564 SANNLARDLRELGRYAEALDLLEEALErYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDH 643

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 792 PD-LATTFNnLGLVYDNKKEYETALSFHKQALEIYEKALSPNHPDLANCYNSIA 844
Cdd:NF040586  644 PDtLAAALS-LANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLA 696
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 427-908 1.55e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 97.85  E-value: 1.55e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 427 RLGMLLIKL--GKFDKAEQVYNALFDFNMAHNEKALLhhqLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSY 504
Cdd:TIGR02917 162 KLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLL---KGDLLLSLGNIELALAAYRKAIAL--------RPNNIAVL 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 505 NNIGQVYNNMGEYEKAlsfyEKSLEIYRQTlAPDHSSLAisYNNiGLVHTQMGDYSKALASHQKAleieLSSLPENHPHL 584
Cdd:TIGR02917 231 LALATILIEAGEFEEA----EKHADALLKK-APNSPLAH--YLK-ALVDFQKKNYEDARETLQDA----LKSAPEYLPAL 298

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 585 AVSynniGLVYKNMGEYEKALESYENALeierKTLPSNHPS---LASS---------------------------FNNIG 634
Cdd:TIGR02917 299 LLA----GASEYQLGNLEQAYQYLNQIL----KYAPNSHQArrlLASIqlrlgrvdeaiatlspalgldpddpaaLSLLG 370

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 635 LLHDNMGDYSKALEFYEKTLEiyqktlpaLHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLpsnHPHLAISH 714
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKATE--------LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG---RADLLLIL 439

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 715 SnigilYNNMGEYSKALASQERaLEIRQKSLPpghrilaTSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLP------ 788
Cdd:TIGR02917 440 S-----YLRSGQFDKALAAAKK-LEKKQPDNA-------SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPaaanla 506

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 789 -----------------------PNHPDLATTFNNLGLVYDNKKE----YETALSFHKQALEIY-------------EKA 828
Cdd:TIGR02917 507 ridiqegnpddaiqrfekvltidPKNLRAILALAGLYLRTGNEEEavawLEKAAELNPQEIEPAlalaqyylgkgqlKKA 586

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 829 LS------PNHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKnHLDLAtsftnlwQLYQTMNDNVQAFSVY 902
Cdd:TIGR02917 587 LAilneaaDAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA-LLLLA-------DAYAVMKNYAKAITSL 658


                  ....*.
gi 2010057926 903 QQSLAN 908
Cdd:TIGR02917 659 KRALEL 664
TPR_12 pfam13424
Tetratricopeptide repeat;
499-572 1.86e-20

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 86.29  E-value: 1.86e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 499 DLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQTLAPDHSSLAISYNNIGLVHTQMGDYSKALASHQKALEI 572
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
446-655 1.93e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 91.13  E-value: 1.93e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 446 NALFDFNMAHNEKALLHHQLGLIKRNQGDYEEALASYEKA---LAIYEKFLPTDHPDLATSYNNIGQVYNNMGEYEKALS 522
Cdd:COG4785    15 AAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAaaaLAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 523 FYEKSLEiyrqtLAPDhssLAISYNNIGLVHTQMGDYSKALASHQKALEIElsslpenhPHLAVSYNNIGLVYKNMGEYE 602
Cdd:COG4785    95 DFDQALE-----LDPD---LAEAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYE 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 603 KALESYENALE--------------IERKTLPsnHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLE 655
Cdd:COG4785   159 LAIADLEKALEldpndperalwlylAERKLDP--EKALALLLEDWATAYLLQGDTEEARELFKLALA 223
TPR_12 pfam13424
Tetratricopeptide repeat;
752-827 2.07e-20

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 86.29  E-value: 2.07e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2010057926 752 LATSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPPNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEIYEK 827
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
584-659 6.82e-19

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 81.66  E-value: 6.82e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2010057926 584 LAVSYNNIGLVYKNMGEYEKALESYENALEIERKTLPSNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQK 659
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 428-907 1.10e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 91.68  E-value: 1.10e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 428 LGMLLIKLGKFDKAEQVYNAlFDFNMAHNEKALlhHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNI 507
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSP-ALGLDPDDPAAL--SLLGEAYLALGDFEKAAEYLAKATEL--------DPENAAARTQL 403

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 508 GQVYNNMGEYEKALSFYEKSLEiyrqtLAPD----HSSLAISYnniglvhTQMGDYSKALAShQKALEielsslpENHPH 583
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQ-----LDPElgraDLLLILSY-------LRSGQFDKALAA-AKKLE-------KKQPD 463

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 584 LAVSYNNIGLVYKNMGEYEKALESYENALEIErktlPSNHPSLAssfnNIGLLHDNMGDYSKALEFYEKTLEIYQKTLPA 663
Cdd:TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE----PDFFPAAA----NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 664 LHPdLAISYNNIGSVYKNLGEYSKAlvFYEKTLDIEektlpsnhPHLAISHSnigilYNNMGEYSKALASQERALEIrqk 743
Cdd:TIGR02917 536 ILA-LAGLYLRTGNEEEAVAWLEKA--AELNPQEIE--------PALALAQY-----YLGKGQLKKALAILNEAADA--- 596

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 744 slppgHRILATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlppnhPDLATTFNNLGLVYDNKKEYETALSFHKQALE 823
Cdd:TIGR02917 597 -----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--------PDSALALLLLADAYAVMKNYAKAITSLKRALE 663

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 824 IyekalspnHPDLANCYNSIASTYQKTQDNTNALLFYRkaleirlkSLPKNHLDLATSFTNLWQLYQTMNDNVQAFSVYQ 903
Cdd:TIGR02917 664 L--------KPDNTEAQIGLAQLLLAAKRTESAKKIAK--------SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727


                  ....
gi 2010057926 904 QSLA 907
Cdd:TIGR02917 728 KALK 731
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 540-699 1.14e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 80.62  E-value: 1.14e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 540 SSLAISYNNIGLVHTQMGDYSKALASHQKALEIElsslPENhphlAVSYNNIGLVYKNMGEYEKALESYENALEIerktl 619
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELD----PDN----PEAFALLGEILLQLGDLDEAIVLLHEALEL----- 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 620 psnHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktlpaLHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIE 699
Cdd:COG4783    68 ---DPDEPEARLNLGLALLKAGDYDEALALLEKALK--------LDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 413-793 1.39e-17

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 88.05  E-value: 1.39e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 413 ERMREeTRGSTGWHR--------LGMLLIKLGKFDKA----EQVYNALFD-FNMAHNEKALLHHQLGLIKRNQGDYEEAL 479
Cdd:NF040586  462 ERQRR-VLGLGEDHPhtlmtaggLGADLRALGRFREAleldEETLERHRRvFGEDHPRTLRAANNLAVSLRLLGDYREAL 540

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 480 ASYEKALAIYEKFLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQTLAPDHsslaisynniglvhtqmgdy 559
Cdd:NF040586  541 ELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLGGPD-------------------- 600

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 560 skalasHQKALEIELSslpenhphLAVSYNNIglvyknmGEYEKALESYENALEIERKTLPSNHP-SLASSFNNIGLLHD 638
Cdd:NF040586  601 ------HPDTLRAAKS--------LAVALRRA-------GRLEEALELAEDTYERYRRRFGPDHPdTLAAALSLANDLRA 659

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 639 nMGDYSKALEFYEKTLEIYQKTLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPH-L--AISHS 715
Cdd:NF040586  660 -LGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYtLaaAVNLA 738

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 716 NIgilYNNMGEYSKALAsqERALEIRQKSLPPGHRILATSY------NNLGSVYDAMGQYLEAISYYEKTLEIERATLPP 789
Cdd:NF040586  739 ND---LAALGDLDAALG--EEALERLRRLLGEDLRAGPDHPdtlacaANLALDLRATGRTEEAEELRADTLARLRRVLGP 813


                  ....
gi 2010057926 790 NHPD 793
Cdd:NF040586  814 DHPD 817
TPR_12 pfam13424
Tetratricopeptide repeat;
710-782 6.15e-17

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 76.27  E-value: 6.15e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2010057926 710 LAISHSNIGILYNNMGEYSKALASQERALEIRQKSLPPGHRILATSYNNLGSVYDAMGQYLEAISYYEKTLEI 782
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 454-670 8.56e-17

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 80.84  E-value: 8.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 454 AHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLeiyrq 533
Cdd:TIGR02521  26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRAL----- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 534 TLAPDHSSLaisYNNIGLVHTQMGDYSKALASHQKALEielssLPeNHPHLAVSYNNIGLVYKNMGEYEKALESYENALE 613
Cdd:TIGR02521  93 TLNPNNGDV---LNNYGTFLCQQGKYEQAMQQFEQAIE-----DP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 614 IErktlpsnhPSLASSFNNIGLLHDNMGDYSKALEFYEKtleiYQKTLPALHPDLAI 670
Cdd:TIGR02521 164 ID--------PQRPESLLELAELYYLRGQYKDARAYLER----YQQTYNQTAESLWL 208
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 459-615 1.28e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 78.08  E-value: 1.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEKFLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPD 538
Cdd:COG5010    12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ-----LDPN 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 539 HSSLaisYNNIGLVHTQMGDYSKALASHQKALEIElsslpenhPHLAVSYNNIGLVYKNMGEYEKALESYENALEIE 615
Cdd:COG5010    87 NPEL---YYNLALLYSRSGDKDEAKEYYEKALALS--------PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
567-781 1.59e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.57  E-value: 1.59e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 567 QKALEIELSSLPENHPHLAVSYNNIGLVYKNmgEYEKALESYENALEIERKTLPSNHPSLASSFNNIGLLHDNMGDYSKA 646
Cdd:COG4785    15 AAAAASKAAILLAALLFAAVLALAIALADLA--LALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 647 LEFYEKTLEiyqktlpaLHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGE 726
Cdd:COG4785    93 IADFDQALE--------LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGR 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 727 YSKALASQERALE--------------IRQKSLPPGHRILATSYnnLGSVYDAMGQYLEAISYYEKTLE 781
Cdd:COG4785   157 YELAIADLEKALEldpndperalwlylAERKLDPEKALALLLED--WATAYLLQGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 585-740 4.36e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 76.00  E-value: 4.36e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 585 AVSYNNIGLVYKNMGEYEKALESYENALEIErktlPSNhpslASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktlpaL 664
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELD----PDN----PEAFALLGEILLQLGDLDEAIVLLHEALE--------L 67

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2010057926 665 HPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlpSNHPHLaisHSNIGILYNNMGEYSKALASQERALEI 740
Cdd:COG4783    68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
TPR_12 pfam13424
Tetratricopeptide repeat;
541-614 8.29e-16

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 73.19  E-value: 8.29e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 541 SLAISYNNIGLVHTQMGDYSKALASHQKALEIELSSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEI 614
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 477-624 1.40e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 74.27  E-value: 1.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 477 EALASYEKALAiyekflptDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHSSLAISYnniGLVHTQM 556
Cdd:COG4235     1 EAIARLRQALA--------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALR-----LDPDNADALLDL---AEALLAA 64

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2010057926 557 GDYSKALASHQKALEIElsslpenhPHLAVSYNNIGLVYKNMGEYEKALESYENALEIerktLPSNHP 624
Cdd:COG4235    65 GDTEEAEELLERALALD--------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL----LPADAP 120
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 501-659 1.51e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 74.46  E-value: 1.51e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 501 ATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHSSLaisYNNIGLVHTQMGDYSKALASHQKALEIelsslpen 580
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALE-----LDPDNPEA---FALLGEILLQLGDLDEAIVLLHEALEL-------- 67

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 581 HPHLAVSYNNIGLVYKNMGEYEKALESYENALEIerktlpsnHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQK 659
Cdd:COG4783    68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKL--------DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
625-698 2.01e-15

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 72.03  E-value: 2.01e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 625 SLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDI 698
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_12 pfam13424
Tetratricopeptide repeat;
793-869 2.18e-15

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 71.65  E-value: 2.18e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 793 DLATTFNNLGLVYDNKKEYETALSFHKQALEIYEKALSPNHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLK 869
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
667-743 4.44e-15

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 70.88  E-value: 4.44e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 667 DLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERALEIRQK 743
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
510-619 1.16e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 70.20  E-value: 1.16e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 510 VYNNMGEYEKALSFYEKSLEiyrqtLAPDHsslAISYNNIGLVHTQMGDYSKALAsHQKALEIElsslpenhPHLAVSYN 589
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALE-----LDPDN---ADALNNLGLLLLEQGRYDEAIA-LEKALKLD--------PNNAEALL 63

                          90       100       110
                  ....*....|....*....|....*....|
gi 2010057926 590 NIGLVYKNMGEYEKALESYENALEIERKTL 619
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPSAL 93
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 717-866 2.11e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.99  E-value: 2.11e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 717 IGILYNNMGEYSKALASQERALEIRQKSlppghrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlpPNHPDLAt 796
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDN--------PEAFALLGEILLQLGDLDEAIVLLHEALELD-----PDEPEAR- 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 797 tfNNLGLVYDNKKEYETALSFHKQALEiyekaLSPNHPDLancYNSIASTYQKTQDNTNALLFYRKALEI 866
Cdd:COG4783    76 --LNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
552-661 2.45e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 69.43  E-value: 2.45e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 552 VHTQMGDYSKALASHQKALEIelsslpenHPHLAVSYNNIGLVYKNMGEYEKALEsYENALEIErktlpsnhPSLASSFN 631
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLD--------PNNAEALL 63

                          90       100       110
                  ....*....|....*....|....*....|
gi 2010057926 632 NIGLLHDNMGDYSKALEFYEKTLEIYQKTL 661
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPSAL 93
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 531-656 4.51e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 70.76  E-value: 4.51e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 531 YRQTLAPDHSSLAISYNNIGLVHTQMGDYSKALASHQKALEIelsslpenHPHLAVSYNNIGLVYKNMGEYEKALESYEN 610
Cdd:COG5010    42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYYEK 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2010057926 611 ALEIErktlpsnhPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEI 656
Cdd:COG5010   114 ALALS--------PDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 406-544 7.09e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 69.26  E-value: 7.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 406 QQIIALTERMREETRGSTGWHRLGMLLIKLGKFDKAEQVYNALFDFNmahNEKALLHHQLGLIKRNQGDYEEALASYEKA 485
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD---PDNADALLDLAEALLAAGDTEEAEELLERA 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 486 LAIyekflptdHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHSSLAI 544
Cdd:COG4235    78 LAL--------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA-----LLPADAPARL 123
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 387-530 2.09e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 68.83  E-value: 2.09e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 387 IDNIDRLYQVELKLASIKNQQIIALTERMREETRGSTGWHRLGMLLIKLGKFDKAEQVYN-ALfdfnMAHNEKALLHHQL 465
Cdd:COG5010    19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEqAL----QLDPNNPELYYNL 94

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926 466 GLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEI 530
Cdd:COG5010    95 ALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
431-536 2.15e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.73  E-value: 2.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 431 LLIKLGKFDKAEQVYNALFDFNmahNEKALLHHQLGLIKRNQGDYEEALAsYEKALAIyekflptdHPDLATSYNNIGQV 510
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELD---PDNADALNNLGLLLLEQGRYDEAIA-LEKALKL--------DPNNAEALLNLAEL 68

                          90       100
                  ....*....|....*....|....*.
gi 2010057926 511 YNNMGEYEKALSFYEKSLEIYRQTLA 536
Cdd:COG3063    69 LLELGDYDEALAYLERALELDPSALR 94
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 462-586 2.52e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 67.72  E-value: 2.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 462 HHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHss 541
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDLAEALLAAGDTEEAEELLERALA-----LDPDN-- 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2010057926 542 lAISYNNIGLVHTQMGDYSKALASHQKALEIelssLPENHPHLAV 586
Cdd:COG4235    85 -PEALYLLGLAAFQQGDYAEAIAAWQKLLAL----LPADAPARLL 124
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 669-825 3.29e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.52  E-value: 3.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 669 AISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlPSNHPHLAishsNIGILYNNMGEYSKALASQERALEIRQKSlppg 748
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELD----PDNPEAFA----LLGEILLQLGDLDEAIVLLHEALELDPDE---- 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 749 hrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlpPNHPDLattFNNLGLVYDNKKEYETALSFHKQALEIY 825
Cdd:COG4783    72 ----PEARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 584-699 4.43e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 68.06  E-value: 4.43e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 584 LAVSYNNIGLVYKNMGEYEKALESYENALEIerktlpsnHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktlpa 663
Cdd:COG5010    53 AFAIESPSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYYEKALA-------- 116

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2010057926 664 LHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIE 699
Cdd:COG5010   117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 464-866 1.10e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 72.42  E-value: 1.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 464 QLGLIKRNQGDYEEALASYEKALAI-YEKFLPTdhPDLATSYNNIGQV----------------------------YNNM 514
Cdd:TIGR02917  61 LLGKIYLALGDYAAAEKELRKALSLgYPKNQVL--PLLARAYLLQGKFqqvldelpgktllddegaaellalrglaYLGL 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 515 GEYEKALSFYEKSLEIyrqtlAPDHSS--LAISYnnigLVHTQmGDYSKALASHQKALEIElsslPENHPHLAVSynniG 592
Cdd:TIGR02917 139 GQLELAQKSYEQALAI-----DPRSLYakLGLAQ----LALAE-NRFDEARALIDEVLTAD----PGNVDALLLK----G 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 593 LVYKNMGEYEKALESYENALEIeRKTLPSNHPSLASS--------------------FNN-------IGLLHDNMGDYSK 645
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKAIAL-RPNNIAVLLALATIlieagefeeaekhadallkkAPNsplahylKALVDFQKKNYED 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 646 ALEFYEKTLEIYQKTLPALHpdLAisynniGSVYKNLGEYSKALVFYEKTLDIeektLPSNHPHLAIshsnIGILYNNMG 725
Cdd:TIGR02917 280 ARETLQDALKSAPEYLPALL--LA------GASEYQLGNLEQAYQYLNQILKY----APNSHQARRL----LASIQLRLG 343

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 726 EYSKALASQERALEIRQKSlppghrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlpPNHPDLATtfnNLGLVY 805
Cdd:TIGR02917 344 RVDEAIATLSPALGLDPDD--------PAALSLLGEAYLALGDFEKAAEYLAKATELD-----PENAAART---QLGISK 407

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 806 --------------------DNKKEYETALSFH-------KQALEIYEKaLSPNHPDLANCYNSIASTYQKTQDNTNALL 858
Cdd:TIGR02917 408 lsqgdpseaiadletaaqldPELGRADLLLILSylrsgqfDKALAAAKK-LEKKQPDNASLHNLLGAIYLGKGDLAKARE 486


                  ....*...
gi 2010057926 859 FYRKALEI 866
Cdd:TIGR02917 487 AFEKALSI 494
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
636-745 1.68e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.04  E-value: 1.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 636 LHDNMGDYSKALEFYEKTLEiyqktlpaLHPDLAISYNNIGSVYKNLGEYSKALVFyEKTLDIEektlpsnhPHLAISHS 715
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALE--------LDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLD--------PNNAEALL 63

                          90       100       110
                  ....*....|....*....|....*....|
gi 2010057926 716 NIGILYNNMGEYSKALASQERALEIRQKSL 745
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPSAL 93
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
792-907 1.77e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.49  E-value: 1.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 792 PDLATTFNNLGLVYDNKKEYETALSFHKQALEIyekalspnHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIrlksl 871
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2010057926 872 pknHLDLATSFTNLWQLYQTMNDNVQAFSVYQQSLA 907
Cdd:COG0457    72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALE 104
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 710-824 1.97e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 66.14  E-value: 1.97e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 710 LAISHSNIGILYNNMGEYSKALASQERALEIRQKSlppghrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlpp 789
Cdd:COG5010    53 AFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN--------PELYYNLALLYSRSGDKDEAKEYYEKALALS------ 118

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2010057926 790 nhPDLATTFNNLGLVYDNKKEYETALSFHKQALEI 824
Cdd:COG5010   119 --PDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
762-866 2.12e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.04  E-value: 2.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 762 VYDAMGQYLEAISYYEKTLEIeratlppnHPDLATTFNNLGLVYDNKKEYETALSFhKQALEIyekalspnHPDLANCYN 841
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63

                          90       100
                  ....*....|....*....|....*
gi 2010057926 842 SIASTYQKTQDNTNALLFYRKALEI 866
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALEL 88
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 600-740 2.81e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 65.75  E-value: 2.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 600 EYEKALESYENALEIERKTLPSNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktlpaLHPDLAISYNNIGSVY 679
Cdd:COG5010    27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ--------LDPNNPELYYNLALLY 98

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2010057926 680 KNLGEYSKALVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGEYSKALASQERALEI 740
Cdd:COG5010    99 SRSGDKDEAKEYYEKALALS--------PDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
720-829 1.13e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 61.72  E-value: 1.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 720 LYNNMGEYSKALASQERALEIRqkslpPGHrilATSYNNLGSVYDAMGQYLEAISYyEKTLEIEratlppnhPDLATTFN 799
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELD-----PDN---ADALNNLGLLLLEQGRYDEAIAL-EKALKLD--------PNNAEALL 63

                          90       100       110
                  ....*....|....*....|....*....|
gi 2010057926 800 NLGLVYDNKKEYETALSFHKQALEIYEKAL 829
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPSAL 93
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 725-907 1.25e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.29  E-value: 1.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 725 GEYSKALASQERALEIRQKSLPPghrilatsYNNLGSVYDAMGQYLEAISYYEKTLEIEratlppnhPDLATTFNNLGLV 804
Cdd:COG2956    22 GQPDKAIDLLEEALELDPETVEA--------HLALGNLYRRRGEYDRAIRIHQKLLERD--------PDRAEALLELAQD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 805 YDNKKEYEtalsfhkQALEIYEKALSPNhPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSlpknhldlATSFTN 884
Cdd:COG2956    86 YLKAGLLD-------RAEELLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN--------AHAYCE 149

                         170       180
                  ....*....|....*....|...
gi 2010057926 885 LWQLYQTMNDNVQAFSVYQQSLA 907
Cdd:COG2956   150 LAELYLEQGDYDEAIEALEKALK 172
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
425-613 1.56e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.94  E-value: 1.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 425 WHRLGMLLIKlgkfdkaeqvynalfdfnmahnekallhhqlglikrnQGDYEEALASYEKALAIYekflptdhPDLATSY 504
Cdd:COG4785    76 YYERGVAYDS-------------------------------------LGDYDLAIADFDQALELD--------PDLAEAY 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 505 NNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHsslAISYNNIGLVHTQMGDYSKALASHQKALEIElSSLPENHPHL 584
Cdd:COG4785   111 NNRGLAYLLLGDYDAALEDFDRALE-----LDPDY---AYAYLNRGIALYYLGRYELAIADLEKALELD-PNDPERALWL 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2010057926 585 AVSY-------------NNIGLVYKNMGEYEKALESYENALE 613
Cdd:COG4785   182 YLAErkldpekalalllEDWATAYLLQGDTEEARELFKLALA 223
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
678-787 5.65e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 59.80  E-value: 5.65e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 678 VYKNLGEYSKALVFYEKTLDIeektlpsnHPHLAISHSNIGILYNNMGEYSKALAsQERALEIRQKSlppghrilATSYN 757
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNN--------AEALL 63

                          90       100       110
                  ....*....|....*....|....*....|
gi 2010057926 758 NLGSVYDAMGQYLEAISYYEKTLEIERATL 787
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPSAL 93
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 562-795 6.54e-11

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 63.51  E-value: 6.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 562 ALASHQKALEIELSSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIErktlpsnhPSLASSFNNIGLLHDNMG 641
Cdd:TIGR02521   8 ALTGCVTTPDVPRSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQQLG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 642 DYSKALEFYEKTLeiyqktlpALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDieektLPsNHPHLAISHSNIGILY 721
Cdd:TIGR02521  80 ELEKAEDSFRRAL--------TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-----DP-LYPQPARSLENAGLCA 145

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 722 NNMGEYSKALASQERALEIRQKSlPPghrilatSYNNLGSVYDAMGQYLEAISYYEKTLeierATLPPNHPDLA 795
Cdd:TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQR-PE-------SLLELAELYYLRGQYKDARAYLERYQ----QTYNQTAESLW 207
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 652-795 6.79e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.79  E-value: 6.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 652 KTLEIYQKTLpALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEektlPSNhphlAISHSNIGILYNNMGEYSKAL 731
Cdd:COG4235     1 EAIARLRQAL-AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD----PDN----ADALLDLAEALLAAGDTEEAE 71

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 732 ASQERALEIRqkslpPGHrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIeratLPPNHPDLA 795
Cdd:COG4235    72 ELLERALALD-----PDN---PEALYLLGLAAFQQGDYAEAIAAWQKLLAL----LPADAPARL 123
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 430-531 9.39e-11

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 60.01  E-value: 9.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 430 MLLIKLGKFDKAEQVYNALFDFNMAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIYEkflptDHPDLATSYNNIGQ 509
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYP-----DSPKAPDALLKLGL 75

                          90       100
                  ....*....|....*....|..
gi 2010057926 510 VYNNMGEYEKALSFYEKSLEIY 531
Cdd:COG1729    76 SYLELGDYDKARATLEELIKKY 97
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 657-783 9.69e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.13  E-value: 9.69e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 657 YQKTLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIeektlpsnHPHLAISHSNIGILYNNMGEYSKALASQER 736
Cdd:COG5010    42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYYEK 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2010057926 737 ALEIRQKSlppghrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIE 783
Cdd:COG5010   114 ALALSPDN--------PNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 529-736 2.31e-10

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 61.97  E-value: 2.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 529 EIYRQTLAPDHSSLAISYNNIGLVHTQMGDYSKALASHQKALEIElsslpenhPHLAVSYNNIGLVYKNMGEYEKALESY 608
Cdd:TIGR02521  17 DVPRSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQQLGELEKAEDSF 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 609 ENALEIerktlpsnHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktLPaLHPDLAISYNNIGSVYKNLGEYSKA 688
Cdd:TIGR02521  89 RRALTL--------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-----DP-LYPQPARSLENAGLCALKAGDFDKA 154

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2010057926 689 LVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGEYSKALASQER 736
Cdd:TIGR02521 155 EKYLTRALQID--------PQRPESLLELAELYYLRGQYKDARAYLER 194
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 707-835 5.03e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 5.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 707 HPHLAISHSNIGILYNNMGEYSKALASQERALEIRQKSlppghrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIErat 786
Cdd:COG4235    13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN--------ADALLDLAEALLAAGDTEEAEELLERALALD--- 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2010057926 787 lpPNHPDlatTFNNLGLVYDNKKEYEtalsfhkQALEIYEKALSPNHPD 835
Cdd:COG4235    82 --PDNPE---ALYLLGLAAFQQGDYA-------EAIAAWQKLLALLPAD 118
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 585-687 5.24e-10

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 59.30  E-value: 5.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 585 AVSYNNIGLVYKNMGEYEKALESYENALEIErktlpSNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktlpaL 664
Cdd:PRK02603   35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--------L 101

                          90       100
                  ....*....|....*....|...
gi 2010057926 665 HPDLAISYNNIGSVYKNLGEYSK 687
Cdd:PRK02603  102 NPKQPSALNNIAVIYHKRGEKAE 124
TPR_12 pfam13424
Tetratricopeptide repeat;
425-491 6.32e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 6.32e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2010057926 425 WHRLGMLLIKLGKFDKAEQVYNALFDFNMA-----HNEKALLHHQLGLIKRNQGDYEEALASYEKALAIYEK 491
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
713-907 7.54e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.93  E-value: 7.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 713 SHSNIGILYNNMGEYSKALASQERALEIRQKSLPPGHRI--LATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlppn 790
Cdd:COG4785    31 FAAVLALAIALADLALALAAAALAAAALAAERIDRALALpdLAQLYYERGVAYDSLGDYDLAIADFDQALELD------- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 791 hPDLATTFNNLGLVYDNKKEYETALSFHKQALEiyekaLSPNHpdlANCYNSIASTYQKTQDNTNALLFYRKALEIRlKS 870
Cdd:COG4785   104 -PDLAEAYNNRGLAYLLLGDYDAALEDFDRALE-----LDPDY---AYAYLNRGIALYYLGRYELAIADLEKALELD-PN 173

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2010057926 871 LPKNHLDLA------------TSFTNLWQ-LYQTMNDNVQAFSVYQQSLA 907
Cdd:COG4785   174 DPERALWLYlaerkldpekalALLLEDWAtAYLLQGDTEEARELFKLALA 223
TPR_10 pfam13374
Tetratricopeptide repeat;
500-539 1.13e-09

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 54.43  E-value: 1.13e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2010057926 500 LATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQTLAPDH 539
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDH 40
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 471-571 1.14e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 56.92  E-value: 1.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 471 NQGDYEEALASYEKALAIYEkflptDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYrqtlaPDHSSLAISYNNIG 550
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYP-----NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74

                          90       100
                  ....*....|....*....|.
gi 2010057926 551 LVHTQMGDYSKALASHQKALE 571
Cdd:COG1729    75 LSYLELGDYDKARATLEELIK 95
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 471-914 1.21e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 1.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 471 NQGDYEEALASYEKALAIyekflptdHPDlATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHSSLAISYNNig 550
Cdd:TIGR00990 139 RNKDFNKAIKLYSKAIEC--------KPD-PVYYSNRAACHNALGDWEKVVEDTTAALE-----LDPDYSKALNRRAN-- 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 551 lVHTQMGDYSKAL--------------ASHQKALEIELSSL------------PENHPHLAVSYNNIG-----LVYKNMG 599
Cdd:TIGR00990 203 -AYDGLGKYADALldltasciidgfrnEQSAQAVERLLKKFaeskakeiletkPENLPSVTFVGNYLQsfrpkPRPAGLE 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 600 E---------------YEKALES-----YENALEIERKTLPSNH--PSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiy 657
Cdd:TIGR00990 282 DsneldeetgngqlqlGLKSPESkadesYEEAARAFEKALDLGKlgEKEAIALNLRGTFKCLKGKHLEALADLSKSIE-- 359

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 658 qktlpaLHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDieektLPSNHPHLAISHSNIGILynnMGEYSKALASQERA 737
Cdd:TIGR00990 360 ------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK-----LNSEDPDIYYHRAQLHFI---KGEFAQAGKDYQKS 425

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 738 LEIRQKSLPPGHRILATSYnNLGSVYDAMGQYLEAISYYEKTleieratlppnhPDLattFNNLGLVYDNKKEYETALSF 817
Cdd:TIGR00990 426 IDLDPDFIFSHIQLGVTQY-KEGSIASSMATFRRCKKNFPEA------------PDV---YNYYGELLLDQNKFDEAIEK 489

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 818 HKQALEIyEKALSPNHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKS-----------LPKNHLDLA-TSFTNL 885
Cdd:TIGR00990 490 FDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECdiavatmaqllLQQGDVDEAlKLFERA 568

                         490       500
                  ....*....|....*....|....*....
gi 2010057926 886 WQLYQTMNDNVQAFSvYQQSLANQDKIVS 914
Cdd:TIGR00990 569 AELARTEGELVQAIS-YAEATRTQIQVQE 596
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 438-802 1.35e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 1.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 438 FDKAEQVYNALFDFNMAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIYekflptdhPDLATSYNNIGQVYNNMGEY 517
Cdd:TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--------PRVTQSYIKRASMNLELGDP 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 518 EKALSFYEKSLEiyrqtLAPDHSSLaisYNNIGLVHTQMGDYSKALASHQKALEIElsslpenhPHLAVSYNNIGLVYKN 597
Cdd:TIGR00990 382 DKAEEDFDKALK-----LNSEDPDI---YYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFIFSHIQLGVTQYK 445

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 598 MGEYEKALESYENALEierktlpsNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLPaLHPDLAISYNNIGS 677
Cdd:TIGR00990 446 EGSIASSMATFRRCKK--------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALA 516

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 678 VYKNLGEYSKALVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGEYSKALASQERALEIRQkslppghrilatsyn 757
Cdd:TIGR00990 517 LFQWKQDFIEAENLCEKALIID--------PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR--------------- 573

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2010057926 758 nlgsvydAMGQYLEAISYYEKTLEIERatLPPNHPDLATTFNNLG 802
Cdd:TIGR00990 574 -------TEGELVQAISYAEATRTQIQ--VQEDYPVLASKLQGML 609
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 557-657 1.40e-09

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 58.14  E-value: 1.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 557 GDYSKALASHQKALEIElsslpENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEierktlpsNHPSLASSFNNIGLL 636
Cdd:PRK02603   49 GEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--------LNPKQPSALNNIAVI 115

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2010057926 637 HDNMGD--------------YSKALEFYEKTLEIY 657
Cdd:PRK02603  116 YHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLA 150
TPR_10 pfam13374
Tetratricopeptide repeat;
752-793 1.42e-09

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 54.05  E-value: 1.42e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2010057926 752 LATSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPPNHPD 793
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
728-867 2.77e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 2.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 728 SKALASQERALEIRQKSLPPGHRI---LATSYNNLGSVYDAMGQYLEAISYYEKTLEieratlppnHPDLATTFNNLGLV 804
Cdd:COG4785    12 LALAAAAASKAAILLAALLFAAVLalaIALADLALALAAAALAAAALAAERIDRALA---------LPDLAQLYYERGVA 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2010057926 805 YDNKKEYETALSFHKQALEIYekalspnhPDLANCYNSIASTYQKTQDNTNALLFYRKALEIR 867
Cdd:COG4785    83 YDSLGDYDLAIADFDQALELD--------PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD 137
TPR_10 pfam13374
Tetratricopeptide repeat;
794-835 3.10e-09

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 53.27  E-value: 3.10e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2010057926 794 LATTFNNLGLVYDNKKEYETALSFHKQALEIYEKALSPNHPD 835
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
COG3899 COG3899
Predicted ATPase [General function prediction only];
470-618 3.73e-09

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 61.03  E-value: 3.73e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926  470 RNQGDYEEALASYEKALAIYEKFLPTDHP-DLATSynnIGQVYNNMGEYEKALSFYEKSLE--IYRQTLAPDH---SSLA 543
Cdd:COG3899    716 LARGAYAEALRYLERALELLPPDPEEEYRlALLLE---LAEALYLAGRFEEAEALLERALAarALAALAALRHgnpPASA 792

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926  544 ISYNNIGLVhtQMGDYSKALASHQKALeiELSSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIERKT 618
Cdd:COG3899    793 RAYANLGLL--LLGDYEEAYEFGELAL--ALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLET 863
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 458-569 3.92e-09

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 56.99  E-value: 3.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 458 KALLHHQLGLIKRNQGDYEEALASYEKALAIYEkflptDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAP 537
Cdd:PRK02603   34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-----LNP 103

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2010057926 538 DHSSlaiSYNNIGLVHTQMGDYSKALASHQKA 569
Cdd:PRK02603  104 KQPS---ALNNIAVIYHKRGEKAEEAGDQDEA 132
TPR_12 pfam13424
Tetratricopeptide repeat;
835-911 8.03e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.16  E-value: 8.03e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2010057926 835 DLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKNHLDLATSFTNLWQLYQTMNDNVQAFSVYQQSLANQDK 911
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 603-740 8.80e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 8.80e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 603 KALESYENALEierktlpsNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEiyqktlpaLHPDLAISYNNIGSVYKNL 682
Cdd:COG4235     1 EAIARLRQALA--------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALR--------LDPDNADALLDLAEALLAA 64

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2010057926 683 GEYSKALVFYEKTLDIEektlpsnhPHLAISHSNIGILYNNMGEYSKALASQERALEI 740
Cdd:COG4235    65 GDTEEAEELLERALALD--------PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 729-866 9.88e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 9.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 729 KALASQERALEIRqkslpPGHrilATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlpPNHPDLATtfnNLGLVYDNK 808
Cdd:COG4235     1 EAIARLRQALAAN-----PND---AEGWLLLGRAYLRLGRYDEALAAYEKALRLD-----PDNADALL---DLAEALLAA 64

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 809 KEYEtalsfhkQALEIYEKALS--PNHPDLancYNSIASTYQKTQDNTNALLFYRKALEI 866
Cdd:COG4235    65 GDTE-------EAEELLERALAldPDNPEA---LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 399-614 3.00e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.79  E-value: 3.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 399 KLASIKNQQIIAL------------TERMREETRGSTGWH--------RLGMLLIKLGKFDKAEQVYNalfDFNMAHNEK 458
Cdd:TIGR02917 626 KLLALQPDSALALllladayavmknYAKAITSLKRALELKpdnteaqiGLAQLLLAAKRTESAKKIAK---SLQKQHPKA 702

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAI--------------------------YEKFLpTDHPDLATSYNNIGQVYN 512
Cdd:TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRapssqnaiklhrallasgntaeavktLEAWL-KTHPNDAVLRTALAELYL 781

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 513 NMGEYEKALSFYEKSLEiyrqtLAPDHsslAISYNNIGLVHTQMGDySKALASHQKALEIElsslPENHPHLavsyNNIG 592
Cdd:TIGR02917 782 AQKDYDKAIKHYQTVVK-----KAPDN---AVVLNNLAWLYLELKD-PRALEYAERALKLA----PNIPAIL----DTLG 844

                         250       260
                  ....*....|....*....|..
gi 2010057926 593 LVYKNMGEYEKALESYENALEI 614
Cdd:TIGR02917 845 WLLVEKGEADRALPLLRKAVNI 866
ycf3 CHL00033
photosystem I assembly protein Ycf3
 543-667 3.12e-08

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 54.24  E-value: 3.12e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 543 AISYNNIGLVHTQMGDYSKALASHQKALEIELSSLPENHphlaVSYNnIGLVYKNMGEYEKALESYENALEIerktlpsn 622
Cdd:CHL00033   35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSY----ILYN-IGLIHTSNGEHTKALEYYFQALER-------- 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2010057926 623 HPSLASSFNNI-------GLLHDNMGDYSKALEFYEKTLEiYQKTLPALHPD 667
Cdd:CHL00033  102 NPFLPQALNNMavichyrGEQAIEQGDSEIAEAWFDQAAE-YWKQAIALAPG 152
TPR_10 pfam13374
Tetratricopeptide repeat;
584-624 7.69e-08

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 49.42  E-value: 7.69e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2010057926 584 LAVSYNNIGLVYKNMGEYEKALESYENALEIERKTLPSNHP 624
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
SNAP pfam14938
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...
 472-651 1.06e-07

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.


Pssm-ID: 405606 [Multi-domain]  Cd Length: 273  Bit Score: 54.50  E-value: 1.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 472 QGDYEEALASYEKALAIYEKfLPTDHpDLATSYNNIGQVYNnMGEYEKALSFYEKSLEIY----RQTLAPDHsslaisYN 547
Cdd:pfam14938  40 AKNWEEAGEAFEKAAECQLK-LGSKD-EAANAYVEAAKCYK-KVDPEEAVRALEKAIEIYtemgRFRRAAKH------KK 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 548 NIG-LVHTQMGDYSKALASHQKALEI---ELSSLPENHPHLAVSYnniglVYKNMGEYEKALESYEnalEIERKTLPSN- 622
Cdd:pfam14938 111 EIAeLYEQELGDLEKAIEAYEQAADWyegEGASALANKCYLKVAD-----LSAELEDYPKAIEIYE---KVAKNSLENNl 182

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2010057926 623 -HPSLASSFNNIGLLHDNMGDY---SKALEFYE 651
Cdd:pfam14938 183 lKYSVKEYFLKAGLCHLAAGDLvaaQRALERYE 215
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
573-770 2.05e-07

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 55.09  E-value: 2.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 573 ELSSLPEN-HPH---LAVSYNNIGLVYKNMGEYEKALE-SYENALEIERKtLPSNHPSLASSFNNIGLLHDNMGDYSKAL 647
Cdd:PRK15370  210 ELKSLPENlQGNiktLYANSNQLTSIPATLPDTIQEMElSINRITELPER-LPSALQSLDLFHNKISCLPENLPEELRYL 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 648 EFYEKTLEIYQKTLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEY 727
Cdd:PRK15370  289 SVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPT 368

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2010057926 728 SKALASQERALEIRQKSLPPGHRILATSYNNLGSVYDAMGQYL 770
Cdd:PRK15370  369 ITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESLPHFR 411
COG3899 COG3899
Predicted ATPase [General function prediction only];
447-576 2.48e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 54.86  E-value: 2.48e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926  447 ALFDFNMAHNEKALLHHQLGLIKRNQGDYEEALASYEKALA--IYEKFLPTDH---PDLATSYNNIGQVYnnMGEYEKAL 521
Cdd:COG3899    733 ELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAarALAALAALRHgnpPASARAYANLGLLL--LGDYEEAY 810

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926  522 SFYEKSLEIYRQTlaPDHSSLAISYNNIGLVHTQMGDYSKALASHQKALEIELSS 576
Cdd:COG3899    811 EFGELALALAERL--GDRRLEARALFNLGFILHWLGPLREALELLREALEAGLET 863
TPR_10 pfam13374
Tetratricopeptide repeat;
668-709 2.75e-07

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 47.88  E-value: 2.75e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2010057926 668 LAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPH 709
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
TPR_10 pfam13374
Tetratricopeptide repeat;
626-667 2.91e-07

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 47.50  E-value: 2.91e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2010057926 626 LASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLPALHPD 667
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
TPR_10 pfam13374
Tetratricopeptide repeat;
463-499 4.03e-07

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 47.11  E-value: 4.03e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2010057926 463 HQLGLIKRNQGDYEEALASYEKALAIYEKFLPTDHPD 499
Cdd:pfam13374   6 NNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 491-607 4.28e-07

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 4.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 491 KFLPTDHPDL-ATSYNNIGQVYNNMGEYEKALSFYEKSLeiyrqTLAPDHSSLAISYNNIGLVHTQMGDYSKALASHQKA 569
Cdd:PRK02603   24 KILPINKKAKeAFVYYRDGMSAQADGEYAEALENYEEAL-----KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA 98

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2010057926 570 LEielsslpENhPHLAVSYNNIGLVYKNMGeyEKALES 607
Cdd:PRK02603   99 LE-------LN-PKQPSALNNIAVIYHKRG--EKAEEA 126
TPR_1 pfam00515
Tetratricopeptide repeat;
585-617 4.88e-07

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 46.65  E-value: 4.88e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 585 AVSYNNIGLVYKNMGEYEKALESYENALEIERK 617
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 466-781 6.24e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 52.61  E-value: 6.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 466 GLIKRNQGDYEEALASYEKALAIyekflpTDHPDLAtsYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDhSSLAis 545
Cdd:COG3071    23 GLLALAEGRYARAEKLLSKAAEH------SEAPLLA--YLLAARAAQALGDYERRDEYLAQALE-----LAPE-AELA-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 546 ynnIGLVHTQM----GDYSKALAShqkaleieLSSLPENHPHLAVsynniGL-----VYKNMGEYEKALE---------- 606
Cdd:COG3071    87 ---VLLTRAELlldqGQAEQALAT--------LEALRAGAPRHPQ-----VLrlllqAYRQLGDWEELLEllpalrkhka 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 607 -SYENALEIERKTLpsnhpslassfnnIGLLHDNMGDYSKALEFYektleiyqKTLPA---LHPDLAISYnniGSVYKNL 682
Cdd:COG3071   151 lSAEEAQALERRAY-------------LGLLRQAARDAEALKALW--------KALPRaerRDPELAAAY---ARALIAL 206

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 683 GEYSKALVFYEKTLDIEE--------KTLPSNHPHLAI--------SHSN-------IGILYNNMGEYSKALASQERALE 739
Cdd:COG3071   207 GDHDEAERLLREALKRQWdprlvrlyGRLQGGDPAKQLkraekwlkKHPNdpdlllaLGRLCLRNQLWGKAREYLEAALA 286

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2010057926 740 IRQKslppghrilATSYNNLGSVYDAMGQYLEAISYYEKTLE 781
Cdd:COG3071   287 LRPS---------AEAYAELARLLEQLGDPEEAAEHYRKALA 319
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 767-877 6.87e-07

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.44  E-value: 6.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 767 GQYLEAISYYEKTLEIERatlppNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEiyekaLSPNHPdlaNCYNSIAST 846
Cdd:PRK02603   49 GEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-----LNPKQP---SALNNIAVI 115

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2010057926 847 YQK-------TQDNTNALLFYRKALE-----IRLKslPKNHLD 877
Cdd:PRK02603  116 YHKrgekaeeAGDQDEAEALFDKAAEywkqaIRLA--PNNYIE 156
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 464-533 7.12e-07

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 47.33  E-value: 7.12e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 464 QLGLIKRNQGDYEEALASYEKALAIYekflpTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQ 533
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARF-----PESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 410-571 7.25e-07

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 52.22  E-value: 7.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 410 ALTERMREETRGSTG----WHRL--------------GMLLIKLGKFDKAEQVYNALFDfnmaHNEKALLHHQLGLIkrN 471
Cdd:COG3071   163 AYLGLLRQAARDAEAlkalWKALpraerrdpelaaayARALIALGDHDEAERLLREALK----RQWDPRLVRLYGRL--Q 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 472 QGDYEEALASYEKALAiyekflptDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIyrQTLAPDHSSLAisynnigL 551
Cdd:COG3071   237 GGDPAKQLKRAEKWLK--------KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL--RPSAEAYAELA-------R 299

                         170       180
                  ....*....|....*....|
gi 2010057926 552 VHTQMGDYSKALASHQKALE 571
Cdd:COG3071   300 LLEQLGDPEEAAEHYRKALA 319
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 555-663 7.48e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.83  E-value: 7.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 555 QMGDYSKALASHQKALEielsSLPeNHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIErktlpSNHPSLASSFNNIG 634
Cdd:COG1729     5 KAGDYDEAIAAFKAFLK----RYP-NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74

                          90       100
                  ....*....|....*....|....*....
gi 2010057926 635 LLHDNMGDYSKALEFYEKTLEIYQKTLPA 663
Cdd:COG1729    75 LSYLELGDYDKARATLEELIKKYPDSEAA 103
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 585-617 1.25e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 45.52  E-value: 1.25e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2010057926  585 AVSYNNIGLVYKNMGEYEKALESYENALEIERK 617
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 725-885 2.02e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 51.84  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 725 GEYSKALASQERALEIRQKSLPPGHRILATSYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPP--NHPDLATTFNNLG 802
Cdd:NF040586  406 GDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLgeDHPHTLMTAGGLG 485

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 803 LVYDNKKEYETALSFHKQALEIYEKALSPNHPDLANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKNHLDLATSF 882
Cdd:NF040586  486 ADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSA 565


                  ...
gi 2010057926 883 TNL 885
Cdd:NF040586  566 NNL 568
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
575-801 2.12e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 51.62  E-value: 2.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 575 SSLPENHPHLAVSYNNIGLVYKNMGEYEKALESYENALEIERKTLPSNHPSLASSFNNIgllhdnmgdyskaLEFYEKtl 654
Cdd:PRK15370  195 ACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRI-------------TELPER-- 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 655 eiyqktLPALHPDLAISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQ 734
Cdd:PRK15370  260 ------LPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAG 333

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 735 ERALEIRQKSLPPGHRILATSYNNLGSVYDAMGQYLEaisyyekTLEIER---ATLPPNHPD----LATTFNNL 801
Cdd:PRK15370  334 ENALTSLPASLPPELQVLDVSKNQITVLPETLPPTIT-------TLDVSRnalTNLPENLPAalqiMQASRNNL 400
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 597-697 3.21e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.91  E-value: 3.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 597 NMGEYEKALESYENALeierKTLPsNHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKtlpalHPDLAISYNNIG 676
Cdd:COG1729     5 KAGDYDEAIAAFKAFL----KRYP-NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPD-----SPKAPDALLKLG 74

                          90       100
                  ....*....|....*....|.
gi 2010057926 677 SVYKNLGEYSKALVFYEKTLD 697
Cdd:COG1729    75 LSYLELGDYDKARATLEELIK 95
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
425-493 3.59e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 3.59e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 425 WHRLGMLLIKLGKFDKAEQVYNALfdfnMAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIYEKFL 493
Cdd:COG3063    29 LNNLGLLLLEQGRYDEAIALEKAL----KLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
ycf3 CHL00033
photosystem I assembly protein Ycf3
 458-571 4.11e-06

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 48.08  E-value: 4.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 458 KALLHHQLGLIKRNQGDYEEALASYEKALAiyekfLPTDHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIyrqtlap 537
Cdd:CHL00033   34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMR-----LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------- 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2010057926 538 dHSSLAISYNNI-------GLVHTQMGDYSKALASHQKALE 571
Cdd:CHL00033  102 -NPFLPQALNNMavichyrGEQAIEQGDSEIAEAWFDQAAE 141
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
804-911 5.79e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 5.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 804 VYDNKKEYETALSFHKQALEIyekalspnHPDLANCYNSIASTYQKTQDNTNALLFyRKALEIRlkslPKNhldlATSFT 883
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLD----PNN----AEALL 63

                          90       100
                  ....*....|....*....|....*...
gi 2010057926 884 NLWQLYQTMNDNVQAFSVYQQSLANQDK 911
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPS 91
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
605-801 6.22e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 50.08  E-value: 6.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 605 LESYENALEIER---KTLPSNHP----SLASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQKTLPALHPDLAISYNNIGS 677
Cdd:PRK15370  176 LKNNKTELRLKIlglTTIPACIPeqitTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITE 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 678 VYKNLGEYSKALVFYEKTLDIEEKTLPSNHPHLAISHSNIGILYNNMGEYSKALASQERALEIRQKSLPPGHRILATSYN 757
Cdd:PRK15370  256 LPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN 335

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2010057926 758 NLGSVYDAMGQYLEAISYYEKTLEIERATLPPNHPDLATTFNNL 801
Cdd:PRK15370  336 ALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNAL 379
TPR_11 pfam13414
TPR repeat;
466-515 8.03e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 43.61  E-value: 8.03e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2010057926 466 GLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMG 515
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKL--------DPDNPEAYYNLGLAYYKLG 42
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 793-909 9.11e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 9.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 793 DLATTFNNLGLVYDNKKEYETALSFHKQALEiyekaLSPNHPDLancYNSIASTYQKTQDNTNALLFYRKALEIRlkslP 872
Cdd:COG5010    52 KAFAIESPSDNLYNKLGDFEESLALLEQALQ-----LDPNNPEL---YYNLALLYSRSGDKDEAKEYYEKALALS----P 119

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2010057926 873 KNhldlATSFTNLWQLYQTMNDNVQAFSVYQQSLANQ 909
Cdd:COG5010   120 DN----PNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_1 pfam00515
Tetratricopeptide repeat;
501-533 1.09e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.79  E-value: 1.09e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 501 ATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQ 533
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 723-828 1.25e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.37  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 723 NMGEYSKALASQERALEirqksLPPGHRILATSYNNLGSVYDAMGQYLEAISYYEKTLEIEratlpPNHPDLATTFNNLG 802
Cdd:COG1729     5 KAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74

                          90       100
                  ....*....|....*....|....*.
gi 2010057926 803 LVYDNKKEYETALSFHKQALEIYEKA 828
Cdd:COG1729    75 LSYLELGDYDKARATLEELIKKYPDS 100
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 501-533 1.40e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 1.40e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2010057926  501 ATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQ 533
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 459-491 2.42e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 42.12  E-value: 2.42e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEK 491
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 427-489 3.74e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 42.32  E-value: 3.74e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 427 RLGMLLIKLGKFDKAEQVYNALF-------DFNMAHNEKALLHHQlglikrnQGDYEEALASYEKALAIY 489
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALarfpespDAAAALLLLGLAALR-------QGRLAEAAAAYRAALRAA 64
TPR_10 pfam13374
Tetratricopeptide repeat;
542-583 5.13e-05

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 41.33  E-value: 5.13e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2010057926 542 LAISYNNIGLVHTQMGDYSKALASHQKALEIELSSLPENHPH 583
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
ADPrib_exo_Tox pfam03496
ADP-ribosyltransferase exoenzyme; This is a family of bacterial and viral bi-glutamic acid ...
 244-389 5.40e-05

ADP-ribosyltransferase exoenzyme; This is a family of bacterial and viral bi-glutamic acid ADP-ribosyltransferases, where, in Swiss:Q93Q17, E403 is the catalytic residue and E401 contributes to the transfer of ADP-ribose to the target protein. In clostridial species it is actin that is being ADP-ribosylated; this result is lethal and dermonecrotic in infected mammals.


Pssm-ID: 427336 [Multi-domain]  Cd Length: 199  Bit Score: 45.05  E-value: 5.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 244 LNRALRTHEVDTIIKMGffiQDLHRQIEQLHKEQSNDQQKRSFIVYRGQGMS--KGEFEKLVRAKG-----GLMSFNS-- 314
Cdd:pfam03496  35 INNYLRQNKGDINGLDA---SDLEKKIKNIDSAFSKSPIPENIIVYRRVGEDyfGLDGGLPLNNNGtineeLVSAFKEkf 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 315 ---------FLSTSKKRKVSLEFSRDAlnnvdaigILFKmiiepsnLSTPF----ALIDDVSYFTSEQEILF---SMHTV 378
Cdd:pfam03496 112 egkvkteygYMSTSLVSDVAASFGGRP--------IILR-------ITVPKgtkgAYISPLSGYPGEQEVLLprgSTYKI 176

                         170
                  ....*....|.
gi 2010057926 379 FRIGEIKQIDN 389
Cdd:pfam03496 177 NKITIVESKGH 187
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 453-651 5.54e-05

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 46.03  E-value: 5.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 453 MAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIY-----------------EKFLPTDHPDLA-TSYNNIGQVYnNM 514
Cdd:cd15832     6 MAKAEKKLKGSGGFFFGSGGSKYEEAAELYEKAANAFklaknweeagdaflkaaECQLKLDSKHDAaNAYVEAAKCY-KK 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 515 GEYEKALSFYEKSLEIY----RQTLAPDHsslaisYNNIG-LVHTQMGDYSKALASHQKALEIELSslpENHPHLAVS-Y 588
Cdd:cd15832    85 VDPQEAVNCLEKAIEIYtemgRFRQAAKH------LKEIAeLYENELGDLDKAIEAYEQAADYYEG---EGANSLANKcY 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2010057926 589 NNIGLVYKNMGEYEKALESYEnalEIERKTLPSN--HPSLASSFNNIGLLHDNMGDY---SKALEFYE 651
Cdd:cd15832   156 LKVADLAAQLEDYDKAIEIYE---QVARSSLENNllKYSAKDYFLKAGLCHLAAGDVvaaQRALEKYA 220
TPR_8 pfam13181
Tetratricopeptide repeat;
587-617 7.61e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 40.46  E-value: 7.61e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2010057926 587 SYNNIGLVYKNMGEYEKALESYENALEIERK 617
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_7 pfam13176
Tetratricopeptide repeat;
503-533 8.06e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.60  E-value: 8.06e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2010057926 503 SYNNIGQVYNNMGEYEKALSFYEKSLEIYRQ 533
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 543-573 8.77e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 8.77e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2010057926  543 AISYNNIGLVHTQMGDYSKALASHQKALEIE 573
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
TPR_1 pfam00515
Tetratricopeptide repeat;
459-492 1.04e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.04e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2010057926 459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEKF 492
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
543-573 1.07e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.07e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2010057926 543 AISYNNIGLVHTQMGDYSKALASHQKALEIE 573
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
TPR_8 pfam13181
Tetratricopeptide repeat;
501-533 1.10e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 40.07  E-value: 1.10e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 501 ATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQ 533
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_1 pfam00515
Tetratricopeptide repeat;
627-659 1.25e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.25e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 627 ASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQK 659
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 767-865 1.51e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 767 GQYLEAISYYEKTLEieratLPPNHPDLATTFNNLGLVYDNKKEYETALSFHKQALEIYekalsPNHPDLANCYNSIAST 846
Cdd:COG1729     7 GDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLGLS 76

                          90
                  ....*....|....*....
gi 2010057926 847 YQKTQDNTNALLFYRKALE 865
Cdd:COG1729    77 YLELGDYDKARATLEELIK 95
TPR_1 pfam00515
Tetratricopeptide repeat;
753-783 1.53e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 1.53e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2010057926 753 ATSYNNLGSVYDAMGQYLEAISYYEKTLEIE 783
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
COG3899 COG3899
Predicted ATPase [General function prediction only];
641-786 1.57e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 46.00  E-value: 1.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926  641 GDYSKALEFYEKTLEIYQKTLPAlHPDLAIsYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPS-----NHPHLAISHS 715
Cdd:COG3899    719 GAYAEALRYLERALELLPPDPEE-EYRLAL-LLELAEALYLAGRFEEAEALLERALAARALAALAalrhgNPPASARAYA 796

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2010057926  716 NIGILYnnMGEYSKALASQERALEIRQKSlpPGHRILATSYNNLGSVYDAMGQYLEAISYYEKTLEIERAT 786
Cdd:COG3899    797 NLGLLL--LGDYEEAYEFGELALALAERL--GDRRLEARALFNLGFILHWLGPLREALELLREALEAGLET 863
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 425-489 1.71e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 1.71e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2010057926 425 WHRLGMLLIKLGKFDKAEQVYNALFDFNMAHNEKALLHHQLGLIKRNQGDYEEALASYEKALAIY 489
Cdd:COG1729    33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKY 97
TPR_1 pfam00515
Tetratricopeptide repeat;
669-701 2.12e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 2.12e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 669 AISYNNIGSVYKNLGEYSKALVFYEKTLDIEEK 701
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_10 pfam13374
Tetratricopeptide repeat;
715-750 2.16e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 39.41  E-value: 2.16e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2010057926 715 SNIGILYNNMGEYSKALASQERALEIRQKSLPPGHR 750
Cdd:pfam13374   6 NNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
TPR_7 pfam13176
Tetratricopeptide repeat;
587-616 2.50e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.06  E-value: 2.50e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 2010057926 587 SYNNIGLVYKNMGEYEKALESYENALEIER 616
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAK 30
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 669-771 2.57e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 42.74  E-value: 2.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 669 AISYNNIGSVYKNLGEYSKALVFYEKTLDIEEKTLPSNHphlaiSHSNIGILYNNMGEYSKALASQERALEIRQKslppg 748
Cdd:PRK02603   35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY-----ILYNMGIIYASNGEHDKALEYYHQALELNPK----- 104

                          90       100
                  ....*....|....*....|...
gi 2010057926 749 hriLATSYNNLGSVYDAMGQYLE 771
Cdd:PRK02603  105 ---QPSALNNIAVIYHKRGEKAE 124
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 585-617 2.70e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.04  E-value: 2.70e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 585 AVSYNNIGLVYKNMGEYEKALESYENALEIERK 617
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 627-659 2.94e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.97  E-value: 2.94e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2010057926  627 ASSFNNIGLLHDNMGDYSKALEFYEKTLEIYQK 659
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 753-784 3.34e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.97  E-value: 3.34e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2010057926  753 ATSYNNLGSVYDAMGQYLEAISYYEKTLEIER 784
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 392-613 3.39e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 43.75  E-value: 3.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 392 RLYQVELKLASIKNQQIIALTERMREETRGSTG--------------WHRLGMLLIKLGK---FDKAE------QVYNAL 448
Cdd:COG3071    88 LLTRAELLLDQGQAEQALATLEALRAGAPRHPQvlrlllqayrqlgdWEELLELLPALRKhkaLSAEEaqalerRAYLGL 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 449 FDfNMAHNEKALLHH--QLGLIKRNQGDYEEALAS-------YEKALAIYEKFLPTD-HPDLATSYNNIgqvynNMGEYE 518
Cdd:COG3071   168 LR-QAARDAEALKALwkALPRAERRDPELAAAYARalialgdHDEAERLLREALKRQwDPRLVRLYGRL-----QGGDPA 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 519 KALSFYEKSLEiyrqtLAPDHSSLAISynnIGLVHTQMGDYSKAlashQKALE--IELSSLPENHPHLAvsynnigLVYK 596
Cdd:COG3071   242 KQLKRAEKWLK-----KHPNDPDLLLA---LGRLCLRNQLWGKA----REYLEaaLALRPSAEAYAELA-------RLLE 302

                         250
                  ....*....|....*..
gi 2010057926 597 NMGEYEKALESYENALE 613
Cdd:COG3071   303 QLGDPEEAAEHYRKALA 319
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 471-572 3.51e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 3.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 471 NQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMGEYEKALSFYEKSLEiyrqtLAPDHSslAISYNNIG 550
Cdd:cd24142    12 DQGNFELALKFLQRALEL--------EPNNVEALELLGEILLELGDVEEAREVLLRAIE-----LDPDGG--YEKYLYLG 76

                          90       100
                  ....*....|....*....|..
gi 2010057926 551 lvhtQMGDYSKALASHQKALEI 572
Cdd:cd24142    77 ----QLSGGEEALQYYEKGIEI 94
ART pfam01129
NAD:arginine ADP-ribosyltransferase;
234-381 3.61e-04

NAD:arginine ADP-ribosyltransferase;


Pssm-ID: 279473  Cd Length: 222  Bit Score: 43.20  E-value: 3.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 234 YTYPCFVHSMLNRALRTHEVDTIIKMGFF-IQDLHRQIEQ-LHKEQSNDQqkRSFIVYRGQG---MSKGEFEKLVRakgg 308
Cdd:pfam01129  72 YTSSSPLYRLFNEAVREAGRSREDYIGNFhFKALHFYLTRaLQLLRQSYQ--PCHQVYRGVKgtrFTYTGPGKSVR---- 145

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2010057926 309 lmsFNSFLSTSKKRKVSLEFSRDALNNVDaigilfkmiiepSNLSTPfalIDDVSYFTSEQEILFSMHTVFRI 381
Cdd:pfam01129 146 ---FGQFTSSSLHKQVAEFFGQDTLFIIK------------TCLGVP---IKPFSFFPSEDEVLIPPFEVFQV 200
TPR_7 pfam13176
Tetratricopeptide repeat;
461-488 3.92e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 38.68  E-value: 3.92e-04
                          10        20
                  ....*....|....*....|....*...
gi 2010057926 461 LHHQLGLIKRNQGDYEEALASYEKALAI 488
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALAL 28
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 669-701 4.31e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 4.31e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2010057926  669 AISYNNIGSVYKNLGEYSKALVFYEKTLDIEEK 701
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
755-790 4.55e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 38.29  E-value: 4.55e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2010057926 755 SYNNLGSVYDAMGQYLEAISYYEKTLEIERATLPPN 790
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_10 pfam13374
Tetratricopeptide repeat;
836-877 4.69e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 38.64  E-value: 4.69e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2010057926 836 LANCYNSIASTYQKTQDNTNALLFYRKALEIRLKSLPKNHLD 877
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 427-487 6.23e-04

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 42.15  E-value: 6.23e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2010057926 427 RLGMLLIKLGKFDKAEQVYNALFDFNMAhnekALLHHQLGLIKRNQGDYEEALASYEKALA 487
Cdd:COG2976   132 RLARVLLAQKKYDEALATLDAVKPEAFA----ALYAELRGDILLAQGDKAEARAAYQKALA 188
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 459-492 6.38e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 6.38e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2010057926  459 ALLHHQLGLIKRNQGDYEEALASYEKALAIYEKF 492
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 681-781 6.64e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 6.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 681 NLGEYSKALVFYEKTLdieeKTLPsNHPHLAISHSNIGILYNNMGEYSKALASQERALEIRqkslpPGHRILATSYNNLG 760
Cdd:COG1729     5 KAGDYDEAIAAFKAFL----KRYP-NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74

                          90       100
                  ....*....|....*....|.
gi 2010057926 761 SVYDAMGQYLEAISYYEKTLE 781
Cdd:COG1729    75 LSYLELGDYDKARATLEELIK 95
TPR_11 pfam13414
TPR repeat;
592-641 6.76e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 6.76e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2010057926 592 GLVYKNMGEYEKALESYENALEIErktlpsnhPSLASSFNNIGLLHDNMG 641
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLD--------PDNPEAYYNLGLAYYKLG 42
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 427-656 6.99e-04

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 42.72  E-value: 6.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 427 RLGMLLIKLGKFDKAEQVYNALFDFNMAHNEKALLHHQLGLIKRN---------------QGDYEEALASYEKALAIY-- 489
Cdd:cd24145    56 KIAEMLEKLGMYKAAYEVLERLYLDCLRWTLKDDESERGHLIKRDlrisiklgelnkdseLGKWELRERLLKKAVEILlk 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 490 --EKFLPTDhpDLATSYNNIGQVYNNMGEYEKALSFYEKSLEIYRQTLAPDHSSLAISY-NNIglvhtqmgdyskALASH 566
Cdd:cd24145   136 lgELWMSPS--EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLmNNE------------AAELA 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 567 QKALEIELSSLPENHPHLAVSYNNIglVYKNMGE-YEKALESYENALEIERKtlPSNHPSLASSFNNIGLLHDNMGDYSK 645
Cdd:cd24145   202 LHALRKPLSSTLIEASRLPQKSRDQ--LLEAALKwAQKALDVAKSIKPKDRD--PECDQACALALYNLGVIAEMLGNLDE 277

                         250
                  ....*....|.
gi 2010057926 646 ALEFYEKTLEI 656
Cdd:cd24145   278 ARKLYKEAISL 288
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 723-832 7.48e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.58  E-value: 7.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 723 NMGEYSKALASQERALEIRQKSLPPGHrILatsyNNLGSVYDAMGQYLEAISYYEKTLEieratLPPNHPdlaTTFNNLG 802
Cdd:PRK02603   47 ADGEYAEALENYEEALKLEEDPNDRSY-IL----YNMGIIYASNGEHDKALEYYHQALE-----LNPKQP---SALNNIA 113

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2010057926 803 LVYDNKKEY-------ETALSFHKQALEIYEKA--LSPN 832
Cdd:PRK02603  114 VIYHKRGEKaeeagdqDEAEALFDKAAEYWKQAirLAPN 152
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 470-652 1.03e-03

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 42.18  E-value: 1.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 470 RNQGDYEEALASYEKALAIYEKflpTDHPDLA-TSYNNIGQVYNnMGEYEKALSFYEKSLEIYrqtlapdhsslaisynn 548
Cdd:cd15832    43 KLAKNWEEAGDAFLKAAECQLK---LDSKHDAaNAYVEAAKCYK-KVDPQEAVNCLEKAIEIY----------------- 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 549 iglvhTQMGDYSKAlASHQKaleielsslpenhphlavsynNIGLVYKN-MGEYEKALESYENALEierktLPSNHPSLA 627
Cdd:cd15832   102 -----TEMGRFRQA-AKHLK---------------------EIAELYENeLGDLDKAIEAYEQAAD-----YYEGEGANS 149

                         170       180
                  ....*....|....*....|....*...
gi 2010057926 628 SSFNN---IGLLHDNMGDYSKALEFYEK 652
Cdd:cd15832   150 LANKCylkVADLAAQLEDYDKAIEIYEQ 177
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 590-657 1.69e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.70  E-value: 1.69e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2010057926 590 NIGLVYKNMGEYEKALESYENALEIERKtlpsnHPSLASSFNNIGLLHDNMGDYSKALEFYEKTLEIY 657
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPE-----SPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
TPR_8 pfam13181
Tetratricopeptide repeat;
753-785 1.89e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.61  E-value: 1.89e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 753 ATSYNNLGSVYDAMGQYLEAISYYEKTLEIERA 785
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 795-827 2.87e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.87e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2010057926  795 ATTFNNLGLVYDNKKEYETALSFHKQALEIYEK 827
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
545-575 3.13e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.98  E-value: 3.13e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2010057926 545 SYNNIGLVHTQMGDYSKALASHQKALEIELS 575
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
TPR_11 pfam13414
TPR repeat;
550-599 3.37e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 36.30  E-value: 3.37e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2010057926 550 GLVHTQMGDYSKALASHQKALEIElsslPENhphlAVSYNNIGLVYKNMG 599
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLD----PDN----PEAYYNLGLAYYKLG 42
TPR_8 pfam13181
Tetratricopeptide repeat;
461-491 3.80e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.84  E-value: 3.80e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2010057926 461 LHHQLGLIKRNQGDYEEALASYEKALAIYEK 491
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_1 pfam00515
Tetratricopeptide repeat;
795-827 4.21e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 4.21e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 795 ATTFNNLGLVYDNKKEYETALSFHKQALEIYEK 827
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
ycf3 CHL00033
photosystem I assembly protein Ycf3
 767-847 4.49e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 39.22  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 767 GQYLEAI-SYYEKT-LEIEratlppnhP-DLATTFNNLGLVYDNKKEYETALSFHKQALEIyekalspnHPDLANCYNSI 843
Cdd:CHL00033   49 GEYAEALqNYYEAMrLEID--------PyDRSYILYNIGLIHTSNGEHTKALEYYFQALER--------NPFLPQALNNM 112


                  ....
gi 2010057926 844 ASTY 847
Cdd:CHL00033  113 AVIC 116
VIP2 cd00233
VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative ...
 265-384 4.53e-03

VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative insecticidal proteins (VIPs) possesses high specificity against the major insect pest, corn rootworms, and belongs to a classs of binary toxins and regulators of biological pathways distinct from classical A-B toxins. A novel family of insecticidal ADP-ribosyltransferses were isolated from Bacillus cereus during vegetative growth, where VIP1 likely targets insect cells and VIP2 ribosylates actin. VIP2 shares significant sequence similarity with enzymatic components of other binary toxins, Clostridium botulinum C2 toxin, C. perfringens iota toxin, C. piroforme toxin, C. piroforme toxin and C. difficile toxin.


Pssm-ID: 238144 [Multi-domain]  Cd Length: 201  Bit Score: 39.31  E-value: 4.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 265 DLHRQIEQLHKEQSNDQQKRSFIVYRGQGM-----------------SKGEFEKLVraKGGLMSFNSFLSTS-------K 320
Cdd:cd00233    63 ELDKQIENIDSAFKKKPIPENITVYRGVDMtylglifqstdgtinktVNKQFEAKF--LGKIYKDDGFMSTSlvsesafG 140

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2010057926 321 KRKVSLEFSRDAlnnvDAIGilfkmiiepsnlstpfALIDDVSYFTSEQEILFSMHTVFRIGEI 384
Cdd:cd00233   141 GRPIILRLTVPK----GSKG----------------AYISPISGFPGELEVLLPRGSTYKINKI 184
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 788-866 5.91e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 39.63  E-value: 5.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 788 PPNHPDLATTFN---------NLGLVYDNKKEYETALSFHKQALEIyekalspnHPDLANCYNSIASTYQKTQDNTNALL 858
Cdd:TIGR02521  15 TPDVPRSSRTTDrnkaakirvQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAED 86


                  ....*...
gi 2010057926 859 FYRKALEI 866
Cdd:TIGR02521  87 SFRRALTL 94
TPR_7 pfam13176
Tetratricopeptide repeat;
629-656 5.99e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 5.99e-03
                          10        20
                  ....*....|....*....|....*...
gi 2010057926 629 SFNNIGLLHDNMGDYSKALEFYEKTLEI 656
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALAL 28
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 456-538 6.32e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 38.50  E-value: 6.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 456 NEKALLHHQLGLIKRNQGDYEEALASYEKALAIyekflptdHPDLATSYNNIGQVYNNMGEY-------EKALSFYEKSL 528
Cdd:PRK02603   69 NDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------NPKQPSALNNIAVIYHKRGEKaeeagdqDEAEALFDKAA 140

                          90
                  ....*....|..
gi 2010057926 529 EIYRQT--LAPD 538
Cdd:PRK02603  141 EYWKQAirLAPN 152
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 475-613 6.34e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 39.07  E-value: 6.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 475 YEEALASY-----EKALAIYEKFLpTDHPDlaTSYNN-----IGQVYNNMGEYEKALSFYEKSLEIyrqtlAPDHSSLAI 544
Cdd:COG2976    57 YEQLLEALaagdaAAAAAAAEKLI-DDYGG--TAYAAlaallLAKAAVDAGDLDKAAAQLQWVLDN-----AKDPALKAL 128

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2010057926 545 SYNNIGLVHTQMGDYSKALAShqkaleieLSSLPENhPHLAVSYNNIGLVYKNMGEYEKALESYENALE 613
Cdd:COG2976   129 ARLRLARVLLAQKKYDEALAT--------LDAVKPE-AFAALYAELRGDILLAQGDKAEARAAYQKALA 188
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 753-783 6.81e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 6.81e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2010057926 753 ATSYNNLGSVYDAMGQYLEAISYYEKTLEIE 783
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELD 31
TPR_1 pfam00515
Tetratricopeptide repeat;
711-743 6.96e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 6.96e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2010057926 711 AISHSNIGILYNNMGEYSKALASQERALEIRQK 743
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
671-700 7.52e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 7.52e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2010057926 671 SYNNIGSVYKNLGEYSKALVFYEKTLDIEE 700
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAK 30
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 801-907 9.54e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 9.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2010057926 801 LGLVYDNKKEYETALSFHKQALEiyekaLSPNHPDLancYNSIASTYQKTQDNTNALLFYRKALEIRlkslPKNhldlAT 880
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALE-----LDPDNPEA---FALLGEILLQLGDLDEAIVLLHEALELD----PDE----PE 73

                          90       100
                  ....*....|....*....|....*..
gi 2010057926 881 SFTNLWQLYQTMNDNVQAFSVYQQSLA 907
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALK 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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