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Conserved domains on  [gi|148700964|gb|EDL32911|]
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coiled-coil domain containing 70, isoform CRA_a, partial [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5493 super family cl35008
Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only] ...
 109-175 1.39e-03

Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only];


The actual alignment was detected with superfamily member COG5493:

Pssm-ID: 444244 [Multi-domain]  Cd Length: 239  Bit Score: 38.81  E-value: 1.39e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148700964 109 FWEMEKSFREEEKTFWKkyrtfWKEDKAFWREDNALWERDRNLLQEDKALWEEEKALWVEERALLAE 175
Cdd:COG5493   36 LEELLERLEKLEEQMRK-----WEEQLRKLEEEIKKLREQVRKLEEDVKRLEEQERKLEEAMAEHSE 97
 
Name Accession Description Interval E-value
COG5493 COG5493
Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only] ...
 109-175 1.39e-03

Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only];


Pssm-ID: 444244 [Multi-domain]  Cd Length: 239  Bit Score: 38.81  E-value: 1.39e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148700964 109 FWEMEKSFREEEKTFWKkyrtfWKEDKAFWREDNALWERDRNLLQEDKALWEEEKALWVEERALLAE 175
Cdd:COG5493   36 LEELLERLEKLEEQMRK-----WEEQLRKLEEEIKKLREQVRKLEEDVKRLEEQERKLEEAMAEHSE 97
 
Name Accession Description Interval E-value
COG5493 COG5493
Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only] ...
 109-175 1.39e-03

Uncharacterized protein, contains PD-(D/E)XK nuclease domain [General function prediction only];


Pssm-ID: 444244 [Multi-domain]  Cd Length: 239  Bit Score: 38.81  E-value: 1.39e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 148700964 109 FWEMEKSFREEEKTFWKkyrtfWKEDKAFWREDNALWERDRNLLQEDKALWEEEKALWVEERALLAE 175
Cdd:COG5493   36 LEELLERLEKLEEQMRK-----WEEQLRKLEEEIKKLREQVRKLEEDVKRLEEQERKLEEAMAEHSE 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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