NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|375366973|gb|EHS70946|]
View 

phage major tail protein, phi13 family [Staphylococcus aureus subsp. aureus IS-125]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_TTP_1 super family cl21657
Phage tail tube protein; This is a family of phage tail tube proteins from Myoviridae.
 1-127 8.44e-43

Phage tail tube protein; This is a family of phage tail tube proteins from Myoviridae.


The actual alignment was detected with superfamily member TIGR01603:

Pssm-ID: 328841  Cd Length: 190  Bit Score: 139.48  E-value: 8.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 375366973    1 MHAFPKEIRKIVFNEDYDEDGVYEEKQGKQNNYVAVWFRQERRDGTFRTVLLPKVMFTNPKIDGETAEKDWDFSSEEVEG 80
Cdd:TIGR01603  68 LIDIPSDQRKFLLGEKLGSDGVLKYGKDDKPPEVAVLFEAPNTVGKNRYVGLYKGKFTPPDIDYKTKEGKPDFSDDKVSG 147

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 375366973   81 EALFPLVDNKKS-VRKYIFDsanmtNHGGDGEKGEEAFLKKILGEEYT 127
Cdd:TIGR01603 148 TAQPREEDEKKGqVEKYAFD-----CAEGEGEGINNNWLKQVLEPKKG 190
 
Name Accession Description Interval E-value
maj_tail_phi13 TIGR01603
phage major tail protein, phi13 family; This model describes a set of proteins that share low ...
 1-127 8.44e-43

phage major tail protein, phi13 family; This model describes a set of proteins that share low levels of sequence similarity but similar lengths and similar patterns of charged, hydrophobic, and Gly/Pro residues. All members (except one attributed to mouse embryo cDNA) belong to phage of Gram-positive bacteria. Several are identified as phage major tail proteins. Some members of this family have additional C-terminal regions of about 100 residues not included in this model. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273713  Cd Length: 190  Bit Score: 139.48  E-value: 8.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 375366973    1 MHAFPKEIRKIVFNEDYDEDGVYEEKQGKQNNYVAVWFRQERRDGTFRTVLLPKVMFTNPKIDGETAEKDWDFSSEEVEG 80
Cdd:TIGR01603  68 LIDIPSDQRKFLLGEKLGSDGVLKYGKDDKPPEVAVLFEAPNTVGKNRYVGLYKGKFTPPDIDYKTKEGKPDFSDDKVSG 147

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 375366973   81 EALFPLVDNKKS-VRKYIFDsanmtNHGGDGEKGEEAFLKKILGEEYT 127
Cdd:TIGR01603 148 TAQPREEDEKKGqVEKYAFD-----CAEGEGEGINNNWLKQVLEPKKG 190
 
Name Accession Description Interval E-value
maj_tail_phi13 TIGR01603
phage major tail protein, phi13 family; This model describes a set of proteins that share low ...
 1-127 8.44e-43

phage major tail protein, phi13 family; This model describes a set of proteins that share low levels of sequence similarity but similar lengths and similar patterns of charged, hydrophobic, and Gly/Pro residues. All members (except one attributed to mouse embryo cDNA) belong to phage of Gram-positive bacteria. Several are identified as phage major tail proteins. Some members of this family have additional C-terminal regions of about 100 residues not included in this model. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273713  Cd Length: 190  Bit Score: 139.48  E-value: 8.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 375366973    1 MHAFPKEIRKIVFNEDYDEDGVYEEKQGKQNNYVAVWFRQERRDGTFRTVLLPKVMFTNPKIDGETAEKDWDFSSEEVEG 80
Cdd:TIGR01603  68 LIDIPSDQRKFLLGEKLGSDGVLKYGKDDKPPEVAVLFEAPNTVGKNRYVGLYKGKFTPPDIDYKTKEGKPDFSDDKVSG 147

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 375366973   81 EALFPLVDNKKS-VRKYIFDsanmtNHGGDGEKGEEAFLKKILGEEYT 127
Cdd:TIGR01603 148 TAQPREEDEKKGqVEKYAFD-----CAEGEGEGINNNWLKQVLEPKKG 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH