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Conserved domains on  [gi|938050385|gb|KPP58593|]
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snRNA-activating protein complex subunit 4-like, partial [Scleropages formosus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 391-430 4.27e-16

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


:

Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 72.99  E-value: 4.27e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 938050385  391 WSKEEDELLLKAVAKYGMKDWAKIRTEVPGRTDGQCRDRY 430
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERW 41
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
440-485 6.79e-14

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


:

Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 66.86  E-value: 6.79e-14
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 938050385    440 KGPWSKEEDALLIKLVEKHGVGRWAKISTELPNRLDCQCLQRWKAM 485
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 336-399 2.90e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


:

Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 56.93  E-value: 2.90e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 938050385   336 WSKEEDEVLKELVYKMriGNfiPYTQISYFMEGRDSSQLIYRWTQVLDPTLRKGHWSKEEDELL 399
Cdd:pfam13921    1 WTEEEDEKLLKLVEKY--GN--DWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 801-1147 3.41e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 3.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  801 DPAVPPVclKKPRKANthtvaqmlyeKRQREFAAKAPAQ-PRKSQLfvPCVMVPQTVLLKPAVQQPAPLASCLPAAPVQP 879
Cdd:PHA03247 2655 DPAPGRV--SRPRRAR----------RLGRAAQASSPPQrPRRRAA--RPTVGSLTSLADPPPPPPTPEPAPHALVSATP 2720

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  880 GAILPKK-RLHKPAEDSEPLDLATKRARVKTVYPRPASGPCVPQGAAAAlsgsvtwivTPngllPVSGLGALMPAVTQTA 958
Cdd:PHA03247 2721 LPPGPAAaRQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP---------AP----PAAPAAGPPRRLTRPA 2787

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  959 VKGGVSPGGGAAAGPLPLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPGARASTAAPTAAAPV------RPI 1032
Cdd:PHA03247 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvrrRPP 2867

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1033 ATPVPFVPLAVRLPLTTRVSSPQISQRAVTQAQtgfmslvsvPSNSTLPLPSPV----DQTASPAGARSQPVVHVVQPGA 1108
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFAL---------PPDQPERPPQPQapppPQPQPQPPPPPQPQPPPPPPPR 2938

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 938050385 1109 SVTPVP----------AGGRSPPRAVRLLQPGTSAATE----PQRPAEPGSKS 1147
Cdd:PHA03247 2939 PQPPLApttdpagagePSGAVPQPWLGALVPGRVAVPRfrvpQPAPSREAPAS 2991
SANT super family cl21498
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 276-329 6.26e-06

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


The actual alignment was detected with superfamily member cd11659:

Pssm-ID: 473887 [Multi-domain]  Cd Length: 53  Bit Score: 44.61  E-value: 6.26e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 938050385  276 PSVNKSLWKKDEIEKLKGIVEEYKAcHWDQIAEKLGtnRTAFMCLQMYQRYINK 329
Cdd:cd11659     1 PSIKKTEWTREEDEKLLHLAKLLPT-QWRTIAPIVG--RTAQQCLERYNKLLDE 51
 
Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 391-430 4.27e-16

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 72.99  E-value: 4.27e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 938050385  391 WSKEEDELLLKAVAKYGMKDWAKIRTEVPGRTDGQCRDRY 430
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERW 41
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
388-435 5.75e-16

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 73.03  E-value: 5.75e-16
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 938050385    388 KGHWSKEEDELLLKAVAKYGMKDWAKIRTEVPGRTDGQCRDRYLDCLK 435
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLK 48
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 391-451 6.64e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 70.42  E-value: 6.64e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 938050385   391 WSKEEDELLLKAVAKYGmKDWAKIRTEVPGRTDGQCRDRYLDCLKGGVKKGPWSKEEDALL 451
Cdd:pfam13921    1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
440-485 6.79e-14

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 66.86  E-value: 6.79e-14
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 938050385    440 KGPWSKEEDALLIKLVEKHGVGRWAKISTELPNRLDCQCLQRWKAM 485
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNL 46
PLN03091 PLN03091
hypothetical protein; Provisional
 386-482 1.70e-13

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 74.63  E-value: 1.70e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  386 LRKGHWSKEEDELLLKAVAKYGMKDWakirTEVPGRTDGQ-----CRDRYLDCLKGGVKKGPWSKEEDALLIKLvekHGV 460
Cdd:PLN03091   12 LRKGLWSPEEDEKLLRHITKYGHGCW----SSVPKQAGLQrcgksCRLRWINYLRPDLKRGTFSQQEENLIIEL---HAV 84

                          90       100
                  ....*....|....*....|....
gi 938050385  461 --GRWAKISTELPNRLDCQCLQRW 482
Cdd:PLN03091   85 lgNRWSQIAAQLPGRTDNEIKNLW 108
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 442-485 2.10e-13

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 65.67  E-value: 2.10e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 938050385  442 PWSKEEDALLIKLVEKHGVGRWAKISTELPNRLDCQCLQRWKAM 485
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 370-482 1.41e-12

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 71.74  E-value: 1.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  370 DSSQLIYRWTQVLDPTLRK-GHWSKEEDELLLKAVAKYGMKDWAKIRTEVPGRTDGQCRDRYLDCLKGGVKKGPWSKEED 448
Cdd:COG5147     1 DTSLHNKELQIKLMQTKRKgGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEED 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 938050385  449 ALLIKLVEKHGVgRWAKISTELPNRLDCQCLQRW 482
Cdd:COG5147    81 EQLIDLDKELGT-QWSTIADYKDRRTAQQCVERY 113
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 440-482 1.50e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 63.29  E-value: 1.50e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 938050385   440 KGPWSKEEDALLIKLVEKHGvGRWAKISTELPNRLDCQCLQRW 482
Cdd:pfam00249    1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPGRTDNQCKNRW 42
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 336-399 2.90e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 56.93  E-value: 2.90e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 938050385   336 WSKEEDEVLKELVYKMriGNfiPYTQISYFMEGRDSSQLIYRWTQVLDPTLRKGHWSKEEDELL 399
Cdd:pfam13921    1 WTEEEDEKLLKLVEKY--GN--DWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
PHA03247 PHA03247
large tegument protein UL36; Provisional
 801-1147 3.41e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 3.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  801 DPAVPPVclKKPRKANthtvaqmlyeKRQREFAAKAPAQ-PRKSQLfvPCVMVPQTVLLKPAVQQPAPLASCLPAAPVQP 879
Cdd:PHA03247 2655 DPAPGRV--SRPRRAR----------RLGRAAQASSPPQrPRRRAA--RPTVGSLTSLADPPPPPPTPEPAPHALVSATP 2720

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  880 GAILPKK-RLHKPAEDSEPLDLATKRARVKTVYPRPASGPCVPQGAAAAlsgsvtwivTPngllPVSGLGALMPAVTQTA 958
Cdd:PHA03247 2721 LPPGPAAaRQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP---------AP----PAAPAAGPPRRLTRPA 2787

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  959 VKGGVSPGGGAAAGPLPLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPGARASTAAPTAAAPV------RPI 1032
Cdd:PHA03247 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvrrRPP 2867

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1033 ATPVPFVPLAVRLPLTTRVSSPQISQRAVTQAQtgfmslvsvPSNSTLPLPSPV----DQTASPAGARSQPVVHVVQPGA 1108
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFAL---------PPDQPERPPQPQapppPQPQPQPPPPPQPQPPPPPPPR 2938

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 938050385 1109 SVTPVP----------AGGRSPPRAVRLLQPGTSAATE----PQRPAEPGSKS 1147
Cdd:PHA03247 2939 PQPPLApttdpagagePSGAVPQPWLGALVPGRVAVPRfrvpQPAPSREAPAS 2991
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 852-1144 4.88e-09

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 60.36  E-value: 4.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385   852 VPQTVLLKPAVQQPAPLASCLPAApvqpGAILPKKRLHKP--AEDSEPLDLATKRARVKTVYPRPASGPCVPQGAAAALS 929
Cdd:pfam17823  110 AASRALAAAASSSPSSAAQSLPAA----IAALPSEAFSAPraAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAA 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385   930 GSVTWIVTPNGLLPVSGLGALMPAV-TQTAVKGGVSPGGGAAAGPLP-LGASANTAAGASQQVTGVSSAPSAVSPPALSP 1007
Cdd:pfam17823  186 SSTTAASSAPTTAASSAPATLTPARgISTAATATGHPAAGTALAAVGnSSPAAGTVTAAVGTVTPAALATLAAAAGTVAS 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  1008 AAPRSSPGArastaaptaaapvrPIAT-PVPfvplAVRLPLTTRVSSPQISQRAVTQaqtGFMSLVSV--PSNSTL--PL 1082
Cdd:pfam17823  266 AAGTINMGD--------------PHARrLSP----AKHMPSDTMARNPAAPMGAQAQ---GPIIQVSTdqPVHNTAgePT 324

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 938050385  1083 PSPVDQTASPAGARSQP-----VVHVVQ-----PGASVTPVPAGGRSPprAVRLLQPGTSAATEP--QRPAEPG 1144
Cdd:pfam17823  325 PSPSNTTLEPNTPKSVAstnlaVVTTTKaqakePSASPVPVLHTSMIP--EVEATSPTTQPSPLLptQGAAGPG 396
PLN03091 PLN03091
hypothetical protein; Provisional
 332-435 2.48e-08

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 58.06  E-value: 2.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  332 RKSVWSKEEDEVLKELVYKMRIGNFIPYTQISYFMEGRDSSQLiyRWTQVLDPTLRKGHWSKEEDELLLKAVAKYGMKdW 411
Cdd:PLN03091   13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRL--RWINYLRPDLKRGTFSQQEENLIIELHAVLGNR-W 89

                          90       100
                  ....*....|....*....|....
gi 938050385  412 AKIRTEVPGRTDGQCRDRYLDCLK 435
Cdd:PLN03091   90 SQIAAQLPGRTDNEIKNLWNSCLK 113
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
333-384 3.74e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 47.99  E-value: 3.74e-07
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 938050385    333 KSVWSKEEDEVLKELVYKMRIGNFipyTQISYFMEGRDSSQLIYRWTQVLDP 384
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNW---EKIAKELPGRTAEQCRERWRNLLKP 49
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 433-495 4.09e-06

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 49.69  E-value: 4.09e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  433 CLKGGVKKGPWSKEEDALLIKLVEKHGVGRWakisTELPNR---LDC--QCLQRWkamTGYGKP--KRSG 495
Cdd:PLN03212   18 CTKMGMKRGPWTVEEDEILVSFIKKEGEGRW----RSLPKRaglLRCgkSCRLRW---MNYLRPsvKRGG 80
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 276-329 6.26e-06

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 44.61  E-value: 6.26e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 938050385  276 PSVNKSLWKKDEIEKLKGIVEEYKAcHWDQIAEKLGtnRTAFMCLQMYQRYINK 329
Cdd:cd11659     1 PSIKKTEWTREEDEKLLHLAKLLPT-QWRTIAPIVG--RTAQQCLERYNKLLDE 51
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
280-329 3.22e-05

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 42.60  E-value: 3.22e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 938050385    280 KSLWKKDEIEKLKGIVEEYKACHWDQIAEKLGtNRTAFMCLQMYQRYINK 329
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 283-344 1.61e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 40.76  E-value: 1.61e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 938050385   283 WKKDEIEKLKGIVEEYkACHWDQIAEKLGtNRTAFMCLQMYQRYINKGFRKSVWSKEEDEVL 344
Cdd:pfam13921    1 WTEEEDEKLLKLVEKY-GNDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
PPE COG5651
PPE-repeat protein [Function unknown];
922-1145 3.26e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.50  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  922 QGAAAALSGSVTW------IVTPNGLLP----VSGLGALMPAVTQTAVKGGVSPGGGAA---AGPLPLGA-SANTAAGAS 987
Cdd:COG5651   155 AAASAAAVALTPFtqppptITNPGGLLGaqnaGSGNTSSNPGFANLGLTGLNQVGIGGLnsgSGPIGLNSgPGNTGFAGT 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  988 QQVTGVSSAPSAVSPPALSPAAPRSSPGARASTAAptaaapvrPIATPVPFVPLAVRLPLTTRVSSPQISQRAVTQAQTG 1067
Cdd:COG5651   235 GAAAGAAAAAAAAAAAAGAGASAALASLAATLLNA--------SSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAAT 306

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938050385 1068 FMSLVSVPSNSTLPLPSPVDQTASPAGARSQPvvhvvqPGASVTPVPAGGRSPPRAVRLLQPGTSAATEPQRPAEPGS 1145
Cdd:COG5651   307 GLGLGAGGAAGAAGATGAGAALGAGAAAAAAG------AAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAA 378
 
Name Accession Description Interval E-value
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 391-430 4.27e-16

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 72.99  E-value: 4.27e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 938050385  391 WSKEEDELLLKAVAKYGMKDWAKIRTEVPGRTDGQCRDRY 430
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERW 41
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
388-435 5.75e-16

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 73.03  E-value: 5.75e-16
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*...
gi 938050385    388 KGHWSKEEDELLLKAVAKYGMKDWAKIRTEVPGRTDGQCRDRYLDCLK 435
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLK 48
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 391-451 6.64e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 70.42  E-value: 6.64e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 938050385   391 WSKEEDELLLKAVAKYGmKDWAKIRTEVPGRTDGQCRDRYLDCLKGGVKKGPWSKEEDALL 451
Cdd:pfam13921    1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 388-434 5.92e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.14  E-value: 5.92e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 938050385   388 KGHWSKEEDELLLKAVAKYGmKDWAKIRTEVPGRTDGQCRDRYLDCL 434
Cdd:pfam00249    1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
440-485 6.79e-14

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 66.86  E-value: 6.79e-14
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 938050385    440 KGPWSKEEDALLIKLVEKHGVGRWAKISTELPNRLDCQCLQRWKAM 485
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNL 46
PLN03091 PLN03091
hypothetical protein; Provisional
 386-482 1.70e-13

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 74.63  E-value: 1.70e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  386 LRKGHWSKEEDELLLKAVAKYGMKDWakirTEVPGRTDGQ-----CRDRYLDCLKGGVKKGPWSKEEDALLIKLvekHGV 460
Cdd:PLN03091   12 LRKGLWSPEEDEKLLRHITKYGHGCW----SSVPKQAGLQrcgksCRLRWINYLRPDLKRGTFSQQEENLIIEL---HAV 84

                          90       100
                  ....*....|....*....|....
gi 938050385  461 --GRWAKISTELPNRLDCQCLQRW 482
Cdd:PLN03091   85 lgNRWSQIAAQLPGRTDNEIKNLW 108
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 442-485 2.10e-13

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 65.67  E-value: 2.10e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 938050385  442 PWSKEEDALLIKLVEKHGVGRWAKISTELPNRLDCQCLQRWKAM 485
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 370-482 1.41e-12

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 71.74  E-value: 1.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  370 DSSQLIYRWTQVLDPTLRK-GHWSKEEDELLLKAVAKYGMKDWAKIRTEVPGRTDGQCRDRYLDCLKGGVKKGPWSKEED 448
Cdd:COG5147     1 DTSLHNKELQIKLMQTKRKgGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEED 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 938050385  449 ALLIKLVEKHGVgRWAKISTELPNRLDCQCLQRW 482
Cdd:COG5147    81 EQLIDLDKELGT-QWSTIADYKDRRTAQQCVERY 113
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 440-482 1.50e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 63.29  E-value: 1.50e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 938050385   440 KGPWSKEEDALLIKLVEKHGvGRWAKISTELPNRLDCQCLQRW 482
Cdd:pfam00249    1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPGRTDNQCKNRW 42
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 336-399 2.90e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 56.93  E-value: 2.90e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 938050385   336 WSKEEDEVLKELVYKMriGNfiPYTQISYFMEGRDSSQLIYRWTQVLDPTLRKGHWSKEEDELL 399
Cdd:pfam13921    1 WTEEEDEKLLKLVEKY--GN--DWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 333-482 9.41e-10

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 62.88  E-value: 9.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  333 KSVWSKEEDEVLKELVYKMRIGN-------FIPYTqisyfmeGRDSSQliyRWTQVLDPTLRKGHWSKEEDELLLKAVAK 405
Cdd:COG5147    20 GGSWKRTEDEDLKALVKKLGPNNwskvaslLISST-------GKQSSN---RWNNHLNPQLKKKNWSEEEDEQLIDLDKE 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 938050385  406 YGMKdWAKIRTEVPGRTDGQCRDRYLDCLKGGVKKgPWSKEEDALLIKLVEKHGVGrWAKISTELPNRLDCQCLQRW 482
Cdd:COG5147    90 LGTQ-WSTIADYKDRRTAQQCVERYVNTLEDLSST-HDSKLQRRNEFDKIDPFNEN-SARRPDIYEDELLEREVNRE 163
PHA03247 PHA03247
large tegument protein UL36; Provisional
 801-1147 3.41e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.88  E-value: 3.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  801 DPAVPPVclKKPRKANthtvaqmlyeKRQREFAAKAPAQ-PRKSQLfvPCVMVPQTVLLKPAVQQPAPLASCLPAAPVQP 879
Cdd:PHA03247 2655 DPAPGRV--SRPRRAR----------RLGRAAQASSPPQrPRRRAA--RPTVGSLTSLADPPPPPPTPEPAPHALVSATP 2720

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  880 GAILPKK-RLHKPAEDSEPLDLATKRARVKTVYPRPASGPCVPQGAAAAlsgsvtwivTPngllPVSGLGALMPAVTQTA 958
Cdd:PHA03247 2721 LPPGPAAaRQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP---------AP----PAAPAAGPPRRLTRPA 2787

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  959 VKGGVSPGGGAAAGPLPLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPGARASTAAPTAAAPV------RPI 1032
Cdd:PHA03247 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvrrRPP 2867

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1033 ATPVPFVPLAVRLPLTTRVSSPQISQRAVTQAQtgfmslvsvPSNSTLPLPSPV----DQTASPAGARSQPVVHVVQPGA 1108
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFAL---------PPDQPERPPQPQapppPQPQPQPPPPPQPQPPPPPPPR 2938

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 938050385 1109 SVTPVP----------AGGRSPPRAVRLLQPGTSAATE----PQRPAEPGSKS 1147
Cdd:PHA03247 2939 PQPPLApttdpagagePSGAVPQPWLGALVPGRVAVPRfrvpQPAPSREAPAS 2991
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 852-1144 4.88e-09

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 60.36  E-value: 4.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385   852 VPQTVLLKPAVQQPAPLASCLPAApvqpGAILPKKRLHKP--AEDSEPLDLATKRARVKTVYPRPASGPCVPQGAAAALS 929
Cdd:pfam17823  110 AASRALAAAASSSPSSAAQSLPAA----IAALPSEAFSAPraAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAA 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385   930 GSVTWIVTPNGLLPVSGLGALMPAV-TQTAVKGGVSPGGGAAAGPLP-LGASANTAAGASQQVTGVSSAPSAVSPPALSP 1007
Cdd:pfam17823  186 SSTTAASSAPTTAASSAPATLTPARgISTAATATGHPAAGTALAAVGnSSPAAGTVTAAVGTVTPAALATLAAAAGTVAS 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  1008 AAPRSSPGArastaaptaaapvrPIAT-PVPfvplAVRLPLTTRVSSPQISQRAVTQaqtGFMSLVSV--PSNSTL--PL 1082
Cdd:pfam17823  266 AAGTINMGD--------------PHARrLSP----AKHMPSDTMARNPAAPMGAQAQ---GPIIQVSTdqPVHNTAgePT 324

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 938050385  1083 PSPVDQTASPAGARSQP-----VVHVVQ-----PGASVTPVPAGGRSPprAVRLLQPGTSAATEP--QRPAEPG 1144
Cdd:pfam17823  325 PSPSNTTLEPNTPKSVAstnlaVVTTTKaqakePSASPVPVLHTSMIP--EVEATSPTTQPSPLLptQGAAGPG 396
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 391-435 6.32e-09

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 52.95  E-value: 6.32e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 938050385  391 WSKEEDELLLKAVAKYGMKDWAKIR---TEVPGRTDGQCRDRYLDCLK 435
Cdd:cd11660     3 WTDEEDEALVEGVEKYGVGNWAKILkdyFFVNNRTSVDLKDKWRNLKK 50
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 443-496 1.24e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 52.31  E-value: 1.24e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 938050385   443 WSKEEDALLIKLVEKHGvGRWAKISTELPNRLDCQCLQRWKAMTGyGKPKRSGW 496
Cdd:pfam13921    1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLN-PKISRGPW 52
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 242-496 1.59e-08

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 59.03  E-value: 1.59e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  242 NRHDDHD----WDKISNIDFE------GTRNAADIRRFWQNCLHPSVNKSLWKKDEIEKLKGIVEEYKAcHWDQIAEKLG 311
Cdd:COG5147    24 KRTEDEDlkalVKKLGPNNWSkvasllISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  312 tNRTAFMClqmYQRYIN--KGFRKSVWSKE--------EDEVLKE-----LVYKMRIGNFIPYTQISYFMEG-RDSSQLI 375
Cdd:COG5147   103 -RRTAQQC---VERYVNtlEDLSSTHDSKLqrrnefdkIDPFNENsarrpDIYEDELLEREVNREASYRLRVpRVSKADV 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  376 YRWTQVLDPTLRKGH-------------------------------WSKEEDELLLKAVAKYG----------------- 407
Cdd:COG5147   179 KPREKGEENNPDIEDlqemkelksasitrhlilpskseinkafkkgETLALEQEINEYKEKKGlsrkqfceriwstdrde 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  408 MKDWAKIRTEVPGRTDGQCRDRYLDCLKGGVKKGPWSKEEDALLIKLVEKHGvGRWAKIStELPNRLDCQCLQRWKAMTG 487
Cdd:COG5147   259 DKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKEEEQELAKLVVEHG-GSWTEIG-KLLGRMPNDCRDRWRDYVK 336

                         330
                  ....*....|
gi 938050385  488 YG-KPKRSGW 496
Cdd:COG5147   337 CGdTLKRNRW 346
PHA03247 PHA03247
large tegument protein UL36; Provisional
 782-1150 2.26e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 2.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  782 ERRRRRAVTYVTQLTTSGQDPAVPPvclKKPRKANTHTVAqmlyekrqrefAAKAPAQPRKSQLFVPcvmvpqtvllkPA 861
Cdd:PHA03247 2681 QRPRRRAARPTVGSLTSLADPPPPP---PTPEPAPHALVS-----------ATPLPPGPAAARQASP-----------AL 2735

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  862 VQQPAPLASclPAAPVQPGAILPKKRlhkPAEDSEPLDLATKRARVKTVyPRPASGPCVPQGAAAALSGSVTWIVTPngl 941
Cdd:PHA03247 2736 PAAPAPPAV--PAGPATPGGPARPAR---PPTTAGPPAPAPPAAPAAGP-PRRLTRPAVASLSESRESLPSPWDPAD--- 2806

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  942 lPVSGLGALMPAVTQTAvkggvspgggAAAGPLPLGASANTAAgasqqvtgvSSAPSAVSPPALSPAAPRSSPGARASta 1021
Cdd:PHA03247 2807 -PPAAVLAPAAALPPAA----------SPAGPLPPPTSAQPTA---------PPPPPGPPPPSLPLGGSVAPGGDVRR-- 2864

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1022 aptaaapvRPIATPVPFVPLAVRLPLTTRVSSPQISQRAVTQAQtgfmslvsvPSNSTLPLPSPvdqtasPAGARSQPVV 1101
Cdd:PHA03247 2865 --------RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL---------PPDQPERPPQP------QAPPPPQPQP 2921

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 938050385 1102 HVVQPGASVTPVPAGGRSPPRAVRllQPGTSAATEPQrPAEPGSKSKHI 1150
Cdd:PHA03247 2922 QPPPPPQPQPPPPPPPRPQPPLAP--TTDPAGAGEPS-GAVPQPWLGAL 2967
PLN03091 PLN03091
hypothetical protein; Provisional
 332-435 2.48e-08

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 58.06  E-value: 2.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  332 RKSVWSKEEDEVLKELVYKMRIGNFIPYTQISYFMEGRDSSQLiyRWTQVLDPTLRKGHWSKEEDELLLKAVAKYGMKdW 411
Cdd:PLN03091   13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRL--RWINYLRPDLKRGTFSQQEENLIIELHAVLGNR-W 89

                          90       100
                  ....*....|....*....|....
gi 938050385  412 AKIRTEVPGRTDGQCRDRYLDCLK 435
Cdd:PLN03091   90 SQIAAQLPGRTDNEIKNLWNSCLK 113
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 442-486 6.19e-08

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 50.26  E-value: 6.19e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 938050385  442 PWSKEEDALLIKLVEKHGVGRWAKI---STELPNRLDCQCLQRWKAMT 486
Cdd:cd11660     2 KWTDEEDEALVEGVEKYGVGNWAKIlkdYFFVNNRTSVDLKDKWRNLK 49
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 386-482 1.01e-07

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 54.70  E-value: 1.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  386 LRKGHWSKEEDELLLKAVAKYGMKDWAKIRTEVP-GRTDGQCRDRYLDCLKGGVKKGPWSKEEDALLIKLVEKHGvGRWA 464
Cdd:PLN03212   23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGlLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLG-NRWS 101

                          90
                  ....*....|....*...
gi 938050385  465 KISTELPNRLDCQCLQRW 482
Cdd:PLN03212  102 LIAGRIPGRTDNEIKNYW 119
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
333-384 3.74e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 47.99  E-value: 3.74e-07
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|..
gi 938050385    333 KSVWSKEEDEVLKELVYKMRIGNFipyTQISYFMEGRDSSQLIYRWTQVLDP 384
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNW---EKIAKELPGRTAEQCRERWRNLLKP 49
PHA03247 PHA03247
large tegument protein UL36; Provisional
 828-1143 1.20e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 1.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  828 RQREFAAKAPAQPRKSQLFV-----------PCVMVPQTVLLKPAVQQPAPLASCLPA--------------APVQPGAI 882
Cdd:PHA03247 2583 TSRARRPDAPPQSARPRAPVddrgdprgpapPSPLPPDTHAPDPPPPSPSPAANEPDPhppptvppperprdDPAPGRVS 2662

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  883 LPKK--RLHKPAEDSEPLDLATKRARVKTVYP-----RPASGPCVPQGAAAALSGSVTWIVTP---NGLLPVSGLGALMP 952
Cdd:PHA03247 2663 RPRRarRLGRAAQASSPPQRPRRRAARPTVGSltslaDPPPPPPTPEPAPHALVSATPLPPGPaaaRQASPALPAAPAPP 2742

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  953 AV-TQTAVKGGVSPGG--GAAAGPLPLGASANTAAGASQQVT---GVSSAPSAVSPPALSPAAPRSSPGARASTAAPTAA 1026
Cdd:PHA03247 2743 AVpAGPATPGGPARPArpPTTAGPPAPAPPAAPAAGPPRRLTrpaVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1027 APVRPIATPV---------PFVPLAVRLPLTTRVS-SPQISQRAVTQaqtgfmSLVSVPSNSTLPlpsPVDQTASPAGAR 1096
Cdd:PHA03247 2823 SPAGPLPPPTsaqptapppPPGPPPPSLPLGGSVApGGDVRRRPPSR------SPAAKPAAPARP---PVRRLARPAVSR 2893

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 938050385 1097 SQPVVHVVQPGASVTPVPAgGRSPPRAVRLLQPGTSAATEPQRPAEP 1143
Cdd:PHA03247 2894 STESFALPPDQPERPPQPQ-APPPPQPQPQPPPPPQPQPPPPPPPRP 2939
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 312-430 1.66e-06

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 50.85  E-value: 1.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  312 TNRTAFMCLQMyqryinkGFRKSVWSKEEDEVLKELVYKMRIGNFIPYTQISYFMEGRDSSQLiyRWTQVLDPTLRKGHW 391
Cdd:PLN03212   11 SKKTTPCCTKM-------GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRL--RWMNYLRPSVKRGGI 81

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 938050385  392 SKEEDELLLKAVAKYGMKdWAKIRTEVPGRTDGQCRDRY 430
Cdd:PLN03212   82 TSDEEDLILRLHRLLGNR-WSLIAGRIPGRTDNEIKNYW 119
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 433-495 4.09e-06

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 49.69  E-value: 4.09e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  433 CLKGGVKKGPWSKEEDALLIKLVEKHGVGRWakisTELPNR---LDC--QCLQRWkamTGYGKP--KRSG 495
Cdd:PLN03212   18 CTKMGMKRGPWTVEEDEILVSFIKKEGEGRW----RSLPKRaglLRCgkSCRLRW---MNYLRPsvKRGG 80
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
949-1139 4.11e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.39  E-value: 4.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  949 ALMPAVTQTAVKGGVSPG--GGAAAGPLPLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAP-RSSPGARASTAAPTA 1025
Cdd:PRK07003  357 AFEPAVTGGGAPGGGVPArvAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAtRAEAPPAAPAPPATA 436

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1026 AAPVRPIATPVPfVPLAVRLPLTTRVSSPQISQRAVTQAQTGFMSLVSVPSNSTLPLPSPVDQTASPAGARSQPVVHVVQ 1105
Cdd:PRK07003  437 DRGDDAADGDAP-VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515

                         170       180       190
                  ....*....|....*....|....*....|....
gi 938050385 1106 PGASVTPVPAGGRSPpravRLLQPGTSAATEPQR 1139
Cdd:PRK07003  516 ASREDAPAAAAPPAP----EARPPTPAAAAPAAR 545
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 276-329 6.26e-06

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 44.61  E-value: 6.26e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 938050385  276 PSVNKSLWKKDEIEKLKGIVEEYKAcHWDQIAEKLGtnRTAFMCLQMYQRYINK 329
Cdd:cd11659     1 PSIKKTEWTREEDEKLLHLAKLLPT-QWRTIAPIVG--RTAQQCLERYNKLLDE 51
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
969-1147 9.19e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.26  E-value: 9.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  969 AAAGPLPLGASANTAAGASQQVTGVSSAPSAVSP-PALSPAAPRSSPGARASTAAPTAaapvRPIATPVPFVPLAVRLPL 1047
Cdd:PRK12323  395 AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPaPEALAAARQASARGPGGAPAPAP----APAAAPAAAARPAAAGPR 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1048 TTRVSSPQISQRAVTQAQTGFMSLVSVPSNS---TLPLPSPVDQTASPAGARSQPvvhVVQPGASVTPVPAGGRSPPRAV 1124
Cdd:PRK12323  471 PVAAAAAAAPARAAPAAAPAPADDDPPPWEElppEFASPAPAQPDAAPAGWVAES---IPDPATADPDDAFETLAPAPAA 547

                         170       180
                  ....*....|....*....|...
gi 938050385 1125 RLLqPGTSAATEPQRPAEPGSKS 1147
Cdd:PRK12323  548 APA-PRAAAATEPVVAPRPPRAS 569
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 384-430 1.26e-05

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 43.84  E-value: 1.26e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 938050385  384 PTLRKGHWSKEEDELLLKAVAKYgmkdWAKIRTEVP--GRTDGQCRDRY 430
Cdd:cd11659     1 PSIKKTEWTREEDEKLLHLAKLL----PTQWRTIAPivGRTAQQCLERY 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
280-329 3.22e-05

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 42.60  E-value: 3.22e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 938050385    280 KSLWKKDEIEKLKGIVEEYKACHWDQIAEKLGtNRTAFMCLQMYQRYINK 329
Cdd:smart00717    1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
PHA03378 PHA03378
EBNA-3B; Provisional
 778-1189 4.09e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 48.14  E-value: 4.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  778 KVIEERRRRRAVTYVTQlTTSGQDPAVPPVCLKKPrkanthtvaqmlyekrqrefaakaPAQPRKSQ---LFVPCVMVPQ 854
Cdd:PHA03378  424 KAIEEEHRKKKAARTEQ-PRATPHSQAPTVVLHRP------------------------PTQPLEGPtgpLSVQAPLEPW 478

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  855 TVLlkPAVQQPAPLASCLPAAPVQ-PGAILpkKRLHKPAEDSEPLDLATKRARVKtvyPRPASG---PCVPQGAAAALSG 930
Cdd:PHA03378  479 QPL--PHPQVTPVILHQPPAQGVQaHGSML--DLLEKDDEDMEQRVMATLLPPSP---PQPRAGrraPCVYTEDLDIESD 551

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  931 S-VTWIVTPNGLLPVSGLGALmpavtqtAVKGGVSPGGGAaagplpLGASANTAAGASQQVTGVSSAPSAVSPPALSPA- 1008
Cdd:PHA03378  552 EpASTEPVHDQLLPAPGLGPL-------QIQPLTSPTTSQ------LASSAPSYAQTPWPVPHPSQTPEPPTTQSHIPEt 618

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1009 -APRSSPgarastaAPTAAAPVRPI-ATPVPFVPLAVRLPlttrvssPQISQRAVTQAQTGFMSLVSVPSNstlplPSPV 1086
Cdd:PHA03378  619 sAPRQWP-------MPLRPIPMRPLrMQPITFNVLVFPTP-------HQPPQVEITPYKPTWTQIGHIPYQ-----PSPT 679

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1087 DQTASpagarsqpvvhvvqpgASVTPVPAGGRSPPRAVRLLQPGTSAATEPQRPAEPGSKSKHIGFDPNLMFLEEESQVR 1166
Cdd:PHA03378  680 GANTM----------------LPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGR 743

                         410       420
                  ....*....|....*....|....
gi 938050385 1167 -EWMKGTGGVVLPQLDSTLPYLPP 1189
Cdd:PHA03378  744 aRPPAAAPGRARPPAAAPGRARPP 767
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 283-327 6.82e-05

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 41.41  E-value: 6.82e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 938050385  283 WKKDEIEKLKGIVEEYKACHWDQIAEKLGTnRTAFMCLQMYQRYI 327
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
901-1094 8.91e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 8.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  901 ATKRARVKTVYPRPASGPCVPQGAAAALSGSVTWIVTPNGLLPvsGLGALMPAVTQTAVKGGVSPGGGAAAGPLPLGASA 980
Cdd:PRK12323  386 APAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP--APEALAAARQASARGPGGAPAPAPAPAAAPAAAAR 463

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  981 NTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPGARASTAAPTAAAPVRPIATPVPFVplavrLPLTTRVSSPQISQRA 1060
Cdd:PRK12323  464 PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV-----AESIPDPATADPDDAF 538

                         170       180       190
                  ....*....|....*....|....*....|....
gi 938050385 1061 VTQAQTGFMSLVSVPSNSTLPLPSPVDQTASPAG 1094
Cdd:PRK12323  539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 975-1121 1.28e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.25  E-value: 1.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  975 PLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPgarastaaptaaapVRPIATPVPFVPLAVRLPlttrvsSP 1054
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAA--------------APAAAASAPAAPPAAAPP------AP 425

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 938050385 1055 QISQRAVTQAQTGFMSLVSVPSNSTLPLPSPVDQTASPagARSQPVVHVVQPGASVTPVPAGGRSPP 1121
Cdd:PRK14951  426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP--VRVAPEPAVASAAPAPAAAPAAARLTP 490
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 283-344 1.61e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 40.76  E-value: 1.61e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 938050385   283 WKKDEIEKLKGIVEEYkACHWDQIAEKLGtNRTAFMCLQMYQRYINKGFRKSVWSKEEDEVL 344
Cdd:pfam13921    1 WTEEEDEKLLKLVEKY-GNDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 952-1123 2.18e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 2.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385   952 PAVTQTAVKGGVSPGGGAAAGPLPLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSP-GARASTAAPTAAAPVR 1030
Cdd:pfam05109  432 PTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPrDNGTESKAPDMTSPTS 511

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  1031 PIATPVPFVPLAvrlplTTRVSSPQISQRAVTQAQTGFMSLVSVPS-NSTLPLP---SPVDQTASPAGARSQPVVHVVQP 1106
Cdd:pfam05109  512 AVTTPTPNATSP-----TPAVTTPTPNATSPTLGKTSPTSAVTTPTpNATSPTPavtTPTPNATIPTLGKTSPTSAVTTP 586

                          170
                   ....*....|....*..
gi 938050385  1107 GASVTPvPAGGRSPPRA 1123
Cdd:pfam05109  587 TPNATS-PTVGETSPQA 602
PHA03247 PHA03247
large tegument protein UL36; Provisional
 952-1155 2.67e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 2.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  952 PAVTQTAVKGGVSPGGGAAAGPLPLGASANTAAGASqqvTGVSSAPSAVSPPALSPAAPRSSPGARASTAAPTAAAPVRP 1031
Cdd:PHA03247  259 PVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPP---DGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAME 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1032 IATPVP----FVPLAV---RLPLTT----------------RVSSPQISQRAVTQAQTGF----------MSLVSVPSNS 1078
Cdd:PHA03247  336 VVSPLPrprqHYPLGFpkrRRPTWTppssledlsagrhhpkRASLPTRKRRSARHAATPFargpggddqtRPAAPVPASV 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1079 TLPLPSPVDQTASPAGARSQPvvhVVQPGASVTPVPAGGRSPPR-AVRLLQPGTSAATEP-------QRPAEP--GSKSK 1148
Cdd:PHA03247  416 PTPAPTPVPASAPPPPATPLP---SAEPGSDDGPAPPPERQPPApATEPAPDDPDDATRKaldalreRRPPEPpgADLAE 492


                  ....*..
gi 938050385 1149 HIGFDPN 1155
Cdd:PHA03247  493 LLGRHPD 499
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 873-1147 3.03e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.55  E-value: 3.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  873 PAAPVQPGAILPkkrlhkpaedSEPLDLATKRARVKTVYPRP-ASGPCVPQGAAAALSGSVTwivtpngllpvSGLGALM 951
Cdd:PHA03307  117 PPPTPPPASPPP----------SPAPDLSEMLRPVGSPGPPPaASPPAAGASPAAVASDAAS-----------SRQAALP 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  952 PAVTQTAVKGGVSPG---------GGAAAGPLPLGASANTAAGASQQVTGVSSA--PSAVSPPALSPAAPRSSPGARAST 1020
Cdd:PHA03307  176 LSSPEETARAPSSPPaepppstppAAASPRPPRRSSPISASASSPAPAPGRSAAddAGASSSDSSSSESSGCGWGPENEC 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1021 AAPTAAAPVRP--IATPVPFVPLAVRLPLTTRVSSPQISQRAVTQAQTGFMSLVSVPSN-------------STLPLPSP 1085
Cdd:PHA03307  256 PLPRPAPITLPtrIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRAsssssssressssSTSSSSES 335

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 938050385 1086 VDQTASPAGARSQPvvhvvQPGASVTPVPAGGRSPPRAVRLLQPGTSAATEPQRPAEPGSKS 1147
Cdd:PHA03307  336 SRGAAVSPGPSPSR-----SPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARA 392
PPE COG5651
PPE-repeat protein [Function unknown];
922-1145 3.26e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.50  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  922 QGAAAALSGSVTW------IVTPNGLLP----VSGLGALMPAVTQTAVKGGVSPGGGAA---AGPLPLGA-SANTAAGAS 987
Cdd:COG5651   155 AAASAAAVALTPFtqppptITNPGGLLGaqnaGSGNTSSNPGFANLGLTGLNQVGIGGLnsgSGPIGLNSgPGNTGFAGT 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  988 QQVTGVSSAPSAVSPPALSPAAPRSSPGARASTAAptaaapvrPIATPVPFVPLAVRLPLTTRVSSPQISQRAVTQAQTG 1067
Cdd:COG5651   235 GAAAGAAAAAAAAAAAAGAGASAALASLAATLLNA--------SSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAAT 306

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938050385 1068 FMSLVSVPSNSTLPLPSPVDQTASPAGARSQPvvhvvqPGASVTPVPAGGRSPPRAVRLLQPGTSAATEPQRPAEPGS 1145
Cdd:COG5651   307 GLGLGAGGAAGAAGATGAGAALGAGAAAAAAG------AAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAA 378
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
833-1059 3.66e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 3.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  833 AAKAPAQPRKSQLFVPCVMVPQTVLLKPAVQQPAPLASCLPAAPVQPGAILPKKRlhKPAEDSEPLDLATKRARVKTVYP 912
Cdd:PRK12323  372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR--SPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  913 RPASGPCVPQGAAAALSGSVTWIVTPNGLLPVSGLGALMPAVTQTAVKGGVS-PGGGAAAGPLPLGASANTAAGASQQVT 991
Cdd:PRK12323  450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEElPPEFASPAPAQPDAAPAGWVAESIPDP 529

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 938050385  992 GVSSAPSAVSPPALSPAAPRSSPgarastaaptAAAPVRPIATPVPFVPLAVRLPLTTRVSSPQISQR 1059
Cdd:PRK12323  530 ATADPDDAFETLAPAPAAAPAPR----------AAAATEPVVAPRPPRASASGLPDMFDGDWPALAAR 587
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 969-1147 6.03e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.52  E-value: 6.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385   969 AAAGPLPLGA--SANTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPGARASTAAPTAAAPVRPIATPVPFV--PLAVR 1044
Cdd:pfam05109  462 ASTGPTVSTAdvTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNAtsPTLGK 541

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  1045 LPLTTRVSSPQISQRAVTQAQTGFMSLVSVPsnsTLPLPSPVDQTASPAGARSQPVVHVVQPGASVTPVPAGG-RSPPRA 1123
Cdd:pfam05109  542 TSPTSAVTTPTPNATSPTPAVTTPTPNATIP---TLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLGGtSSTPVV 618

                          170       180
                   ....*....|....*....|....
gi 938050385  1124 VRLLQPGTSAATEPQRPAEPGSKS 1147
Cdd:pfam05109  619 TSPPKNATSAVTTGQHNITSSSTS 642
PHA03247 PHA03247
large tegument protein UL36; Provisional
 865-1143 6.41e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 6.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  865 PAPLASCLPAAPVQPGAILPKKRLHKPAEDSepldlATKRARVKTVYPRPASgPCVPQGAaaalSGSVTWIVTPNGLLPV 944
Cdd:PHA03247 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPA-----VTSRARRPDAPPQSAR-PRAPVDD----RGDPRGPAPPSPLPPD 2620

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  945 SGlgALMPAVTQTAVKGGVSPGGGAAAGP---LPLGASANTAAGASQQVTGVSSAPSAVSPPalSPAAPRSSPGARASTA 1021
Cdd:PHA03247 2621 TH--APDPPPPSPSPAANEPDPHPPPTVPppeRPRDDPAPGRVSRPRRARRLGRAAQASSPP--QRPRRRAARPTVGSLT 2696

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1022 APTAAAPVRPIATPVPfVPLAVRLPLTTrvsspqisqraVTQAQTGfmslvSVPSNSTLPLPSPV-DQTASPAGARSQPV 1100
Cdd:PHA03247 2697 SLADPPPPPPTPEPAP-HALVSATPLPP-----------GPAAARQ-----ASPALPAAPAPPAVpAGPATPGGPARPAR 2759

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 938050385 1101 VHVVQPGASVTP--VPAGG---RSPPRAVRLLQPGTSAATEPQRPAEP 1143
Cdd:PHA03247 2760 PPTTAGPPAPAPpaAPAAGpprRLTRPAVASLSESRESLPSPWDPADP 2807
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 861-1037 8.92e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.82  E-value: 8.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  861 AVQQPAPLASClPAAPVQPGAILPKKRLHKPAEDSEPldlatkrarVKTVYPRPASGPcvpqGAAAALSGSVTWIVTPNG 940
Cdd:PRK07764  586 AVVGPAPGAAG-GEGPPAPASSGPPEEAARPAAPAAP---------AAPAAPAPAGAA----AAPAEASAAPAPGVAAPE 651

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  941 LLPvsglgalmPAVTQTAVKGGVSPGGGAAAGPLPLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPGARAST 1020
Cdd:PRK07764  652 HHP--------KHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQ 723

                         170
                  ....*....|....*..
gi 938050385 1021 AAPTAAAPVRPIATPVP 1037
Cdd:PRK07764  724 AAQGASAPSPAADDPVP 740
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
912-1141 1.18e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  912 PRPASGPCVPQGAAAALSGSVTWIVTPNGLLPVSGLGALMPAVTQTAVKGGVSPGggAAAGPLPLGASANTAAGASQQVT 991
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA--PEALAAARQASARGPGGAPAPAP 452

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  992 GVSSAPSAVSPPALSPAAPR--SSPGARASTAAPtaaapvrpiATPVP---FVPLAVRLPLTTRVSSPQISQRAVTQAQT 1066
Cdd:PRK12323  453 APAAAPAAAARPAAAGPRPVaaAAAAAPARAAPA---------AAPAPaddDPPPWEELPPEFASPAPAQPDAAPAGWVA 523

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 938050385 1067 GfmslvsvpsnstlplPSPVDQTASPAGARSQPVVHVVQPGASVTPVPAGGRSPPRAVRLLQPGTSAATEPQRPA 1141
Cdd:PRK12323  524 E---------------SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 909-1151 1.28e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.02  E-value: 1.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385   909 TVYPRPASgpcVPQGAAAAL--SGSVTWIVTPNGLlpvsglGALMPAVTQTAVKGGVSPGGGAAAGPLPLGASANTAAGA 986
Cdd:pfam17823   64 TAAPAPVT---LTKGTSAAHlnSTEVTAEHTPHGT------DLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAI 134

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385   987 SQQVTGVSSAPSAVSPPALSPAAPRSspgarastaaptaaapvrPIATPVPfvplavrlplTTRVSSPQISQRAVTQAQT 1066
Cdd:pfam17823  135 AALPSEAFSAPRAAACRANASAAPRA------------------AIAAASA----------PHAASPAPRTAASSTTAAS 186

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  1067 GFMSLVSVPSNSTLPLPSpvdqTASPAGARSQPVVHVVQPGASVTPVPAGGRSPpravrllQPGT-SAATEPQRPAEPGS 1145
Cdd:pfam17823  187 STTAASSAPTTAASSAPA----TLTPARGISTAATATGHPAAGTALAAVGNSSP-------AAGTvTAAVGTVTPAALAT 255


                   ....*.
gi 938050385  1146 KSKHIG 1151
Cdd:pfam17823  256 LAAAAG 261
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 387-445 1.67e-03

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 42.57  E-value: 1.67e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 938050385  387 RKGHWSKEEDELLLKAVAKYGmKDWAKIRTEVPGRTDGQCRDRYL------DCLKGGVKKGPWSK 445
Cdd:COG5259   278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLqlpiedNYLSKGDGKGDNSK 341
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 833-1154 2.00e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 2.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  833 AAKAPAQPRKSQLFVPCVMVPQTvllkPAVQQPAPLASCLPAAPVQPGAILPKKRLHKPAEDSEPLDLAtkRARVKTVYP 912
Cdd:PRK07764  415 AAPAAAAAPAPAAAPQPAPAPAP----APAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAA--PAPAPPAAP 488

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  913 RPASGPCVPQGAAAALSGSVT------W--IVTPNGLLPVSGLGALMPAVTQTAVKGGV---SPGGGAAAGPLPLGASAN 981
Cdd:PRK07764  489 APAAAPAAPAAPAAPAGADDAatlrerWpeILAAVPKRSRKTWAILLPEATVLGVRGDTlvlGFSTGGLARRFASPGNAE 568

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  982 TAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPGARASTAAPTAAapvRPIATPVPFVPLAVRLPLTTRVSSPQIS-QRA 1060
Cdd:PRK07764  569 VLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAA---RPAAPAAPAAPAAPAPAGAAAAPAEASAaPAP 645

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1061 VTQAQTGFMSLVSVPSNSTLPLPSPVDQTASPAGARSQPVVHVVQPGASVTPvPAGGRSPPRAVRLLQPGTSAATEPQRP 1140
Cdd:PRK07764  646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAA-PAQPAPAPAATPPAGQADDPAAQPPQA 724

                         330
                  ....*....|....
gi 938050385 1141 AEPGSKSKHIGFDP 1154
Cdd:PRK07764  725 AQGASAPSPAADDP 738
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 872-1144 2.69e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 2.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  872 LPAAPVQPGAILPK-----KRLHKPAEDSEPldlATKRARVKTVYPRPASGPcvPQGAAAALSGSVTWIVTPNGLLPVSG 946
Cdd:PRK07764  364 LPSASDDERGLLARlerleRRLGVAGGAGAP---AAAAPSAAAAAPAAAPAP--AAAAPAAAAAPAPAAAPQPAPAPAPA 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  947 lgalmPAVTQTAVKGGVSPGGGAAAGPLPLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAPRSSPgaraSTAAPTAA 1026
Cdd:PRK07764  439 -----PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA----APAGADDA 509

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1027 APVR----------------------PIATPVPFVPLAVRL-----PLTTRVSSPQISQ--RAVTQAQTG----FMSLVS 1073
Cdd:PRK07764  510 ATLRerwpeilaavpkrsrktwaillPEATVLGVRGDTLVLgfstgGLARRFASPGNAEvlVTALAEELGgdwqVEAVVG 589

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 938050385 1074 VPSNSTLPLPSPVDQTASPAGARSQPvVHVVQPGASVTPVPAGGRSPPRAVRLLQPGTSAATEPQRPAEPG 1144
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARP-AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAV 659
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 438-482 3.13e-03

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 36.90  E-value: 3.13e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 938050385  438 VKKGPWSKEEDALLIKLVeKHGVGRWAKIStELPNRLDCQCLQRW 482
Cdd:cd11659     3 IKKTEWTREEDEKLLHLA-KLLPTQWRTIA-PIVGRTAQQCLERY 45
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
857-1137 5.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 5.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  857 LLKPAVQQPAPLASCLPAA---PVQPGAIlpkkrlHKPAEDSEPLDLATKRARVKTVyPRPASGPCVPQGAAAALSgsvT 933
Cdd:PRK07003  352 LLRMLAFEPAVTGGGAPGGgvpARVAGAV------PAPGARAAAAVGASAVPAVTAV-TGAAGAALAPKAAAAAAA---T 421

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  934 WIVTPNGLLPVSGLGAlmpAVTQTAVKGGVSPGGGAAAGPLPLGASANTAAGASQQVTGVSSAPSAVSPPALSPAAP--- 1010
Cdd:PRK07003  422 RAEAPPAAPAPPATAD---RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRaaa 498

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1011 -RSSPGARASTAAPtaaapvrPIATPVPFVPLAVRLPlTTRVSSPQISQRAVTQAQTGFMSLVSVPSNSTLPLPS----- 1084
Cdd:PRK07003  499 pSAATPAAVPDARA-------PAAASREDAPAAAAPP-APEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSdrgar 570

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1085 -------PVDQTASPAGARSQPVVHVVQPGAsvtPVPAGGRSPPRAVRLLQPGTSAATEP 1137
Cdd:PRK07003  571 aaaaakpAAAPAAAPKPAAPRVAVQVPTPRA---RAATGDAPPNGAARAEQAAESRGAPP 627
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 919-1143 5.30e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 5.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  919 CVPQGAAAALSGSVTWIVTPNgllpvsglgalMPAVTQTAVKGGVSPGGGAAAGPlplgASANTAAGASQQVTGVSSAPS 998
Cdd:PRK07764  586 AVVGPAPGAAGGEGPPAPASS-----------GPPEEAARPAAPAAPAAPAAPAP----AGAAAAPAEASAAPAPGVAAP 650

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  999 AVSPPAlsPAAPRSSPGARASTAAPTAAAPVRPIATPVPFVPLAvrlplTTRVSSPQISQRAVTQAqtgfmslVSVPSNS 1078
Cdd:PRK07764  651 EHHPKH--VAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA-----PAGAAPAQPAPAPAATP-------PAGQADD 716

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 938050385 1079 TLPLPSPVDQTASPAGARSQPVVHV-VQPGASVTPVPAGGRSPPRAVRLLQPGTSAATEPQRPAEP 1143
Cdd:PRK07764  717 PAAQPPQAAQGASAPSPAADDPVPLpPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 921-1144 5.77e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 5.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  921 PQGAAAALSGSVTWIVTPNGLLPVSGLGALMPAVTQTAVKGGVS-PGGGAAAGPLPL----------GASANTAAGASQQ 989
Cdd:PHA03307   22 PRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFePPTGPPPGPGTEapanesrstpTWSLSTLAPASPA 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  990 VTGVSSAPSAVS----PPALSPAAPRSSPGARASTAAPTAAAPVRPIATPVPFVPLAVRLPLTTRVSSPQISqravtqaq 1065
Cdd:PHA03307  102 REGSPTPPGPSSpdppPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAA-------- 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1066 tgfmSLVSVPSNSTLPLPSP----VDQTASPAGARSQPVVHVVQPGASVTPVPAGGRSpPRAVRLLQPGTSAATEPQRPA 1141
Cdd:PHA03307  174 ----LPLSSPEETARAPSSPpaepPPSTPPAAASPRPPRRSSPISASASSPAPAPGRS-AADDAGASSSDSSSSESSGCG 248


                  ...
gi 938050385 1142 EPG 1144
Cdd:PHA03307  249 WGP 251
PRK13875 PRK13875
conjugal transfer protein TrbL; Provisional
 914-1015 6.97e-03

conjugal transfer protein TrbL; Provisional


Pssm-ID: 237537  Cd Length: 440  Bit Score: 40.66  E-value: 6.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  914 PASGPCVPQGAAAALSGSVTWivtPNGLLPVSGLGALMPAVtqtavkGGV-SPGGGAAAGPLPLGASANTAAGASQQVTG 992
Cdd:PRK13875  304 GGAAAAARGGAAAAGGASSAY---SAGAAGGSGAAGVAAGL------GGVaRAGASAAASPLRRAASRAAESMKSSFRAG 374

                          90       100
                  ....*....|....*....|...
gi 938050385  993 VSSAPSAVSPPALSPAAPRSSPG 1015
Cdd:PRK13875  375 ARSTGGGAGGAAAAAAAGAAAAG 397
PHA03247 PHA03247
large tegument protein UL36; Provisional
 910-1146 9.96e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 9.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  910 VYPRPA--SGPCVPQGAAAALSGSVTWIVTPNG-------LLPVSGLGALMPAVTQTAVKGGVSPGGGAAAGPLPLGASA 980
Cdd:PHA03247 2479 VYRRPAeaRFPFAAGAAPDPGGGGPPDPDAPPApsrlapaILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPA 2558

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385  981 NTAAGASQQVTGVSSAPSAVSPPALSPAAprsspgarastaaptaaapvRPIATPVPFVPlavRLPLTTRVSSPQISQRA 1060
Cdd:PHA03247 2559 APPAAPDRSVPPPRPAPRPSEPAVTSRAR--------------------RPDAPPQSARP---RAPVDDRGDPRGPAPPS 2615

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 938050385 1061 vtqaqtgfmslvSVPSNSTLPLPSPVDQTASPAGArSQPVVHVVQPGASVTPVPAGGR-SPPRAVRLLQPGTSAATEPQR 1139
Cdd:PHA03247 2616 ------------PLPPDTHAPDPPPPSPSPAANEP-DPHPPPTVPPPERPRDDPAPGRvSRPRRARRLGRAAQASSPPQR 2682


                  ....*..
gi 938050385 1140 PAEPGSK 1146
Cdd:PHA03247 2683 PRRRAAR 2689
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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