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Conserved domains on  [gi|1063742785|ref|NP_001332085|]
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LOW protein: M-phase inducer phosphatase-like protein [Arabidopsis thaliana]

Protein Classification

VARLMGL and DUF4378 domain-containing protein( domain architecture ID 10344195)

VARLMGL and DUF4378 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
388-550 3.09e-35

Domain of unknown function (DUF4378);


:

Pssm-ID: 464133  Cd Length: 157  Bit Score: 130.14  E-value: 3.09e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063742785 388 ELEYITRTLRRTGIDRDTPiSYAKWFSPSHPLDPSIFYFLEHFavtstrPRNSPENLSLRCNRKLLFHLVDEILADILKP 467
Cdd:pfam14309   1 EFSYVRDILLASGLLGKDE-SLSRWHSPDCPLDPSLFDELEEK------YGGGEETRESRSERKLLFDLVNEALVEILAS 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063742785 468 HINLKPWVCHY-PIRSQRNLKGSELIDELSRRIER-FPLAKCLVLEDIdalVAGDFPEIES--AFEEDGEGIVTEIERGI 543
Cdd:pfam14309  74 SSYPPGWVSSAsSRRRPKVPSGEGLLEEVWSEIRSwLSPESGLMLDEL---VDKDLSGRGGwlDLEDEVDEIGLEIERLI 150

                  ....*..
gi 1063742785 544 FETLVTE 550
Cdd:pfam14309 151 LDDLVEE 157
VARLMGL super family cl16843
DUF761-associated sequence motif; This family is found frequently at the N-terminus of family ...
19-48 5.07e-09

DUF761-associated sequence motif; This family is found frequently at the N-terminus of family DUF3741, pfam12552.


The actual alignment was detected with superfamily member pfam14383:

Pssm-ID: 405132  Cd Length: 32  Bit Score: 51.73  E-value: 5.07e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063742785  19 TPTETYSPSIKTPTLVARLMGLDLVPDNYR 48
Cdd:pfam14383   2 SVTDEEGNGMRAPGVVARLMGLDSLPSSHR 31
 
Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
388-550 3.09e-35

Domain of unknown function (DUF4378);


Pssm-ID: 464133  Cd Length: 157  Bit Score: 130.14  E-value: 3.09e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063742785 388 ELEYITRTLRRTGIDRDTPiSYAKWFSPSHPLDPSIFYFLEHFavtstrPRNSPENLSLRCNRKLLFHLVDEILADILKP 467
Cdd:pfam14309   1 EFSYVRDILLASGLLGKDE-SLSRWHSPDCPLDPSLFDELEEK------YGGGEETRESRSERKLLFDLVNEALVEILAS 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063742785 468 HINLKPWVCHY-PIRSQRNLKGSELIDELSRRIER-FPLAKCLVLEDIdalVAGDFPEIES--AFEEDGEGIVTEIERGI 543
Cdd:pfam14309  74 SSYPPGWVSSAsSRRRPKVPSGEGLLEEVWSEIRSwLSPESGLMLDEL---VDKDLSGRGGwlDLEDEVDEIGLEIERLI 150

                  ....*..
gi 1063742785 544 FETLVTE 550
Cdd:pfam14309 151 LDDLVEE 157
VARLMGL pfam14383
DUF761-associated sequence motif; This family is found frequently at the N-terminus of family ...
19-48 5.07e-09

DUF761-associated sequence motif; This family is found frequently at the N-terminus of family DUF3741, pfam12552.


Pssm-ID: 405132  Cd Length: 32  Bit Score: 51.73  E-value: 5.07e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063742785  19 TPTETYSPSIKTPTLVARLMGLDLVPDNYR 48
Cdd:pfam14383   2 SVTDEEGNGMRAPGVVARLMGLDSLPSSHR 31
 
Name Accession Description Interval E-value
DUF4378 pfam14309
Domain of unknown function (DUF4378);
388-550 3.09e-35

Domain of unknown function (DUF4378);


Pssm-ID: 464133  Cd Length: 157  Bit Score: 130.14  E-value: 3.09e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063742785 388 ELEYITRTLRRTGIDRDTPiSYAKWFSPSHPLDPSIFYFLEHFavtstrPRNSPENLSLRCNRKLLFHLVDEILADILKP 467
Cdd:pfam14309   1 EFSYVRDILLASGLLGKDE-SLSRWHSPDCPLDPSLFDELEEK------YGGGEETRESRSERKLLFDLVNEALVEILAS 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063742785 468 HINLKPWVCHY-PIRSQRNLKGSELIDELSRRIER-FPLAKCLVLEDIdalVAGDFPEIES--AFEEDGEGIVTEIERGI 543
Cdd:pfam14309  74 SSYPPGWVSSAsSRRRPKVPSGEGLLEEVWSEIRSwLSPESGLMLDEL---VDKDLSGRGGwlDLEDEVDEIGLEIERLI 150

                  ....*..
gi 1063742785 544 FETLVTE 550
Cdd:pfam14309 151 LDDLVEE 157
VARLMGL pfam14383
DUF761-associated sequence motif; This family is found frequently at the N-terminus of family ...
19-48 5.07e-09

DUF761-associated sequence motif; This family is found frequently at the N-terminus of family DUF3741, pfam12552.


Pssm-ID: 405132  Cd Length: 32  Bit Score: 51.73  E-value: 5.07e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063742785  19 TPTETYSPSIKTPTLVARLMGLDLVPDNYR 48
Cdd:pfam14383   2 SVTDEEGNGMRAPGVVARLMGLDSLPSSHR 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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