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Conserved domains on  [gi|193788560|ref|NP_057258|]
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inactive glycosyltransferase 25 family member 3 isoform a precursor [Homo sapiens]

Protein Classification

glycosyltransferase family 25 protein( domain architecture ID 10158351)

glycosyltransferase family 25 protein may be involved in lipopolysaccharide (LPS) biosynthesis, facilitating the transfer of one of a variety of sugars onto a growing LPS chain

CAZY:  GT25
Gene Ontology:  GO:1901271
PubMed:  9334165

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
 322-535 7.23e-40

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 145.53  E-value: 7.23e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 322 VFVISLARRPDRRERMLASLWEMEISGRVVDAVDGwmlnssaiRNLGVDLLPGYQDP----YSGRTLTKGEVGCFLSHYS 397
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDG--------RDLSEEELARYDRAkalrRYGRPLTPGEIGCFLSHRK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 398 IWEEVVARGLARVLVFEDDVRFESNFrgrlERLMEDVEAEKLSWDLIYLG-RKQVNPEKETAVEGLPG--LVVAGYSYW- 473
Cdd:COG3306   75 AWQKIVESGLPYALILEDDVILSPDF----AEVLEALAWLPADWDIVKLEtSKRKVFLGRRKIKKLGGyrLVRPYSPPLg 150

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 193788560 474 TLAYALRLAGARKLLA-SQPLRRmlPVDEFLPimfdqhpneqykaHFWPRDLVAFSAQPLLAA 535
Cdd:COG3306  151 TAGYLISRKAAKKLLAlLEPIDR--PVDDFLF-------------RFWLHGLRVYQVRPALVI 198
Glyco_tranf_GTA_type super family cl11394
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
 37-81 4.92e-05

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


The actual alignment was detected with superfamily member cd04192:

Pssm-ID: 472172 [Multi-domain]  Cd Length: 229  Bit Score: 44.97  E-value: 4.92e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 193788560  37 ILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQ 81
Cdd:cd04192    3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE 47
BcsA super family cl43359
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 26-159 3.73e-04

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


The actual alignment was detected with superfamily member COG1215:

Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 42.81  E-value: 3.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560  26 AESPLPAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWlaAVGDDYAAVVWRPEgeprfy 105
Cdd:COG1215   24 APADLPRVSVIIPAYNEEAVIEETLRSLLAQDYPKEKLEVIVVDDGSTDETAEIAREL--AAEYPRVRVIERPE------ 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 193788560 106 pdEEGPKHwtkerhqflmelkqealtfARNWGA-----DYILFADTDNILTNNQTLRLL 159
Cdd:COG1215   96 --NGGKAA-------------------ALNAGLkaargDIVVFLDADTVLDPDWLRRLV 133
 
Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
 322-535 7.23e-40

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 145.53  E-value: 7.23e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 322 VFVISLARRPDRRERMLASLWEMEISGRVVDAVDGwmlnssaiRNLGVDLLPGYQDP----YSGRTLTKGEVGCFLSHYS 397
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDG--------RDLSEEELARYDRAkalrRYGRPLTPGEIGCFLSHRK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 398 IWEEVVARGLARVLVFEDDVRFESNFrgrlERLMEDVEAEKLSWDLIYLG-RKQVNPEKETAVEGLPG--LVVAGYSYW- 473
Cdd:COG3306   75 AWQKIVESGLPYALILEDDVILSPDF----AEVLEALAWLPADWDIVKLEtSKRKVFLGRRKIKKLGGyrLVRPYSPPLg 150

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 193788560 474 TLAYALRLAGARKLLA-SQPLRRmlPVDEFLPimfdqhpneqykaHFWPRDLVAFSAQPLLAA 535
Cdd:COG3306  151 TAGYLISRKAAKKLLAlLEPIDR--PVDDFLF-------------RFWLHGLRVYQVRPALVI 198
Glyco_transf_25 cd06532
Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of ...
 321-503 2.58e-36

Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.


Pssm-ID: 133474  Cd Length: 128  Bit Score: 131.96  E-value: 2.58e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 321 EVFVISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLNSSAIRNLGVDllpgYQDPYSGRTLTKGEVGCFLSHYSIWE 400
Cdd:cd06532    1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDA----LFLPRYGRPLTPGEIGCFLSHYKLWQ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 401 EVVARGLARVLVFEDDVRFESNfrgrlerlmedveaeklswdliylgrkqvnpeketaveglpglvvagysyWTLAYALR 480
Cdd:cd06532   77 KIVESNLEYALILEDDAILDPD--------------------------------------------------GTAGYLVS 106

                        170       180
                 ....*....|....*....|...
gi 193788560 481 LAGARKLLASQPlRRMLPVDEFL 503
Cdd:cd06532  107 RKGAKKLLAALE-PIDLPVDVFL 128
Glyco_transf_25 pfam01755
Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to ...
 319-503 9.98e-33

Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis.


Pssm-ID: 366794  Cd Length: 200  Bit Score: 124.47  E-value: 9.98e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560  319 FDEVFVISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLNSSAIRNlgvDLLPGYQDPYSGRTLTKGEVGCFLSHYSI 398
Cdd:pfam01755   1 MIKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFK---LYNFLLRSKYAGRPLTLGEIGCFLSHYSL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560  399 WEEVVARGLARVLVFEDDVRFESNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPEKEtaVEGLPGLVVAGYSY------ 472
Cdd:pfam01755  78 WQKCVELNLEYIIILEDDVILSENFKAILQFLLKEINELEFLRLGEWLKTRFDPNDKF--IVRLETFLMDSKKFkrtpia 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 193788560  473 ---------------WTLAYALRLAGARKLL-ASQPLRrmLPVDEFL 503
Cdd:pfam01755 156 dygnrafyllksghaGTAGYLITPKAAKKLLkYSKNWP--LPVDDLM 200
GT_2_like_e cd04192
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
 37-81 4.92e-05

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133035 [Multi-domain]  Cd Length: 229  Bit Score: 44.97  E-value: 4.92e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 193788560  37 ILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQ 81
Cdd:cd04192    3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE 47
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 26-159 3.73e-04

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 42.81  E-value: 3.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560  26 AESPLPAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWlaAVGDDYAAVVWRPEgeprfy 105
Cdd:COG1215   24 APADLPRVSVIIPAYNEEAVIEETLRSLLAQDYPKEKLEVIVVDDGSTDETAEIAREL--AAEYPRVRVIERPE------ 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 193788560 106 pdEEGPKHwtkerhqflmelkqealtfARNWGA-----DYILFADTDNILTNNQTLRLL 159
Cdd:COG1215   96 --NGGKAA-------------------ALNAGLkaargDIVVFLDADTVLDPDWLRRLV 133
 
Name Accession Description Interval E-value
COG3306 COG3306
Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope ...
 322-535 7.23e-40

Glycosyltransferase involved in LPS biosynthesis, GR25 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442535 [Multi-domain]  Cd Length: 238  Bit Score: 145.53  E-value: 7.23e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 322 VFVISLARRPDRRERMLASLWEMEISGRVVDAVDGwmlnssaiRNLGVDLLPGYQDP----YSGRTLTKGEVGCFLSHYS 397
Cdd:COG3306    3 IFVINLDRSTERREHIEAQLARLGLDFEFFDAVDG--------RDLSEEELARYDRAkalrRYGRPLTPGEIGCFLSHRK 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 398 IWEEVVARGLARVLVFEDDVRFESNFrgrlERLMEDVEAEKLSWDLIYLG-RKQVNPEKETAVEGLPG--LVVAGYSYW- 473
Cdd:COG3306   75 AWQKIVESGLPYALILEDDVILSPDF----AEVLEALAWLPADWDIVKLEtSKRKVFLGRRKIKKLGGyrLVRPYSPPLg 150

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 193788560 474 TLAYALRLAGARKLLA-SQPLRRmlPVDEFLPimfdqhpneqykaHFWPRDLVAFSAQPLLAA 535
Cdd:COG3306  151 TAGYLISRKAAKKLLAlLEPIDR--PVDDFLF-------------RFWLHGLRVYQVRPALVI 198
Glyco_transf_25 cd06532
Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of ...
 321-503 2.58e-36

Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.


Pssm-ID: 133474  Cd Length: 128  Bit Score: 131.96  E-value: 2.58e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 321 EVFVISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLNSSAIRNLGVDllpgYQDPYSGRTLTKGEVGCFLSHYSIWE 400
Cdd:cd06532    1 KIFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDA----LFLPRYGRPLTPGEIGCFLSHYKLWQ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560 401 EVVARGLARVLVFEDDVRFESNfrgrlerlmedveaeklswdliylgrkqvnpeketaveglpglvvagysyWTLAYALR 480
Cdd:cd06532   77 KIVESNLEYALILEDDAILDPD--------------------------------------------------GTAGYLVS 106

                        170       180
                 ....*....|....*....|...
gi 193788560 481 LAGARKLLASQPlRRMLPVDEFL 503
Cdd:cd06532  107 RKGAKKLLAALE-PIDLPVDVFL 128
Glyco_transf_25 pfam01755
Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to ...
 319-503 9.98e-33

Glycosyltransferase family 25 (LPS biosynthesis protein); Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyze the transfer of various sugars onto the growing LPS chain during its biosynthesis.


Pssm-ID: 366794  Cd Length: 200  Bit Score: 124.47  E-value: 9.98e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560  319 FDEVFVISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLNSSAIRNlgvDLLPGYQDPYSGRTLTKGEVGCFLSHYSI 398
Cdd:pfam01755   1 MIKIYVISLKRATERREHIQKEFGKLNIPFQFFDAIDGKELPNHLLFK---LYNFLLRSKYAGRPLTLGEIGCFLSHYSL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560  399 WEEVVARGLARVLVFEDDVRFESNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPEKEtaVEGLPGLVVAGYSY------ 472
Cdd:pfam01755  78 WQKCVELNLEYIIILEDDVILSENFKAILQFLLKEINELEFLRLGEWLKTRFDPNDKF--IVRLETFLMDSKKFkrtpia 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 193788560  473 ---------------WTLAYALRLAGARKLL-ASQPLRrmLPVDEFL 503
Cdd:pfam01755 156 dygnrafyllksghaGTAGYLITPKAAKKLLkYSKNWP--LPVDDLM 200
GT_2_like_e cd04192
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
 37-81 4.92e-05

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133035 [Multi-domain]  Cd Length: 229  Bit Score: 44.97  E-value: 4.92e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 193788560  37 ILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQ 81
Cdd:cd04192    3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE 47
Glyco_tranf_GTA_type cd00761
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
 37-160 5.93e-05

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


Pssm-ID: 132997 [Multi-domain]  Cd Length: 156  Bit Score: 43.65  E-value: 5.93e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560  37 ILARNAEHSLPHYLGALERLDYPRARmaLWCATDHNVDNTTEMLQEWLAAVGDdyaavvwrpegePRFYPDEEGPKHWtk 116
Cdd:cd00761    3 IPAYNEEPYLERCLESLLAQTYPNFE--VIVVDDGSTDGTLEILEEYAKKDPR------------VIRVINEENQGLA-- 66

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 193788560 117 erhqflmelkqealtFARNWGA-----DYILFADTDNILTNNQTLRLLM 160
Cdd:cd00761   67 ---------------AARNAGLkaargEYILFLDADDLLLPDWLERLVA 100
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 26-159 3.73e-04

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 42.81  E-value: 3.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193788560  26 AESPLPAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWlaAVGDDYAAVVWRPEgeprfy 105
Cdd:COG1215   24 APADLPRVSVIIPAYNEEAVIEETLRSLLAQDYPKEKLEVIVVDDGSTDETAEIAREL--AAEYPRVRVIERPE------ 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 193788560 106 pdEEGPKHwtkerhqflmelkqealtfARNWGA-----DYILFADTDNILTNNQTLRLL 159
Cdd:COG1215   96 --NGGKAA-------------------ALNAGLkaargDIVVFLDADTVLDPDWLRRLV 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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