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Conserved domains on  [gi|11024668|ref|NP_067601|]
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aryl-hydrocarbon-interacting protein-like 1 [Rattus norvegicus]

Protein Classification

FKBP-type peptidyl-prolyl cis-trans isomerase( domain architecture ID 139723)

FKBP-type peptidyl-prolyl cis-trans isomerase acts as a PPIase that accelerates the folding of proteins

CATH:  3.10.50.40
EC:  5.2.1.8
Gene Ontology:  GO:0003755
SCOP:  4001062

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 185-300 2.64e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 2.64e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 185 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 264
Cdd:COG3914 119 GNLLLALGRLEEALAALRRAL--------ALNPDFAEAY----------LNLGEALRRLGRLEEAIAALRRALELDPDNA 180

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 11024668 265 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKA 300
Cdd:COG3914 181 EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
FKBP_C super family cl19519
FKBP-type peptidyl-prolyl cis-trans isomerase;
30-89 3.28e-05

FKBP-type peptidyl-prolyl cis-trans isomerase;


The actual alignment was detected with superfamily member pfam00254:

Pssm-ID: 473184  Cd Length: 94  Bit Score: 42.18  E-value: 3.28e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668    30 GSRVTFHFRTMKCDEerTVIDDSKQVGQPMNIIIGNMFKLEVWETLLTSMRLGEVAEFWC 89
Cdd:pfam00254   8 GDRVTVHYTGTLEDG--TVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTI 65
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 185-300 2.64e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 2.64e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 185 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 264
Cdd:COG3914 119 GNLLLALGRLEEALAALRRAL--------ALNPDFAEAY----------LNLGEALRRLGRLEEAIAALRRALELDPDNA 180

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 11024668 265 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKA 300
Cdd:COG3914 181 EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
30-89 3.28e-05

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 42.18  E-value: 3.28e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668    30 GSRVTFHFRTMKCDEerTVIDDSKQVGQPMNIIIGNMFKLEVWETLLTSMRLGEVAEFWC 89
Cdd:pfam00254   8 GDRVTVHYTGTLEDG--TVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTI 65
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 261-304 3.45e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.08  E-value: 3.45e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 11024668  261 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRE 304
Cdd:PLN03088  33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76
TPR_11 pfam13414
TPR repeat;
185-205 4.02e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.75  E-value: 4.02e-03
                          10        20
                  ....*....|....*....|.
gi 11024668   185 GNRLYKLGRYDQAATKYQEAI 205
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKAL 21
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 185-300 2.64e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 2.64e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 185 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 264
Cdd:COG3914 119 GNLLLALGRLEEALAALRRAL--------ALNPDFAEAY----------LNLGEALRRLGRLEEAIAALRRALELDPDNA 180

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 11024668 265 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKA 300
Cdd:COG3914 181 EALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
185-317 7.67e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.62  E-value: 7.67e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 185 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEwlklekmintLILNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 264
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKAL--------ELDPDDAE----------ALYNLGLAYLRLGRYEEALADYEQALELDPDDA 76

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 11024668 265 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAvLRELRLLESRLADKQE 317
Cdd:COG0457  77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEA-LYNLGLALLELGRYDE 128
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
181-317 1.45e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 1.45e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 181 LHGEGNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPwevewlkleKMINTLiLNYCQCLLKKEEYYEVLEHTSDILRHH 260
Cdd:COG0457  45 LYNLGLAYLRLGRYEEALADYEQAL--------ELDP---------DDAEAL-NNLGLALQALGRYEEALEDYDKALELD 106

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 11024668 261 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAvLRELRLLESRLADKQE 317
Cdd:COG0457 107 PDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA-LYNLGIALEKLGRYEE 162
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 185-314 2.41e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 2.41e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 185 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 264
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKAL--------RLDPDNADAL----------LDLAEALLAAGDTEEAEELLERALALDPDNP 85

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 11024668 265 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSmrkavLRELRLLESRLAD 314
Cdd:COG4235  86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPA-----DAPARLLEASIAE 130
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 134-295 5.51e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 5.51e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 134 YEDLDELQKEPQPLIFLIELLQVEAPNEYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAivclrnlqt 213
Cdd:COG5010  10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA--------- 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 214 kekpwevewLKLEKMINTLILNYCQCLLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLEL 293
Cdd:COG5010  81 ---------LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151


                ..
gi 11024668 294 EP 295
Cdd:COG5010 152 SP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 189-317 8.56e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 8.56e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 189 YKLGRYDQAATKYQ----------EAIVCLRNLQTKEKPWE--VEWL-KLEKMINTLILNYC---QCLLKKEEYYEVLEH 252
Cdd:COG2956  87 LKAGLLDRAEELLEklleldpddaEALRLLAEIYEQEGDWEkaIEVLeRLLKLGPENAHAYCelaELYLEQGDYDEAIEA 166

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 11024668 253 TSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSmRKAVLRELRLLESRLADKQE 317
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD-YLPALPRLAELYEKLGDPEE 230
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
181-322 1.98e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.38  E-value: 1.98e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 181 LHGEGNRLYKLGRYDQAATKYQEAivclrnlqtkekpwevewLKLEKMINTLILNYCQCLLKKEEYYEVLEHTSDILRHH 260
Cdd:COG0457  79 LNNLGLALQALGRYEEALEDYDKA------------------LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 11024668 261 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRELRLLESRLADKQEEERQR 322
Cdd:COG0457 141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
30-89 3.28e-05

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 42.18  E-value: 3.28e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668    30 GSRVTFHFRTMKCDEerTVIDDSKQVGQPMNIIIGNMFKLEVWETLLTSMRLGEVAEFWC 89
Cdd:pfam00254   8 GDRVTVHYTGTLEDG--TVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTI 65
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
174-320 6.80e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.37  E-value: 6.80e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 174 RMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPwevewlkleKMINTlilnYCQ---CLLKKEEYYEVL 250
Cdd:COG4785  69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQAL--------ELDP---------DLAEA----YNNrglAYLLLGDYDAAL 127

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 251 EHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLReLRLLESRLADKQEEER 320
Cdd:COG4785 128 EDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALW-LYLAERKLDPEKALAL 196
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 185-295 7.35e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 7.35e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 185 GNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPGIV 264
Cdd:COG4783  45 GEILLQLGDLDEAIVLLHEAL--------ELDPDEPEAR----------LNLGLALLKAGDYDEALALLEKALKLDPEHP 106

                        90       100       110
                ....*....|....*....|....*....|.
gi 11024668 265 KAYYMRARAHAEVWNAEEAKADLEKVLELEP 295
Cdd:COG4783 107 EAYLRLARAYRALGRPDEAIAALEKALELDP 137
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
188-299 8.13e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 8.13e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 188 LYKLGRYDQAATKYQEAivclrnlqtkekpwevewLKLEKMINTLILNYCQCLLKKEEYYEVLEHTSdILRHHPGIVKAY 267
Cdd:COG3063   2 YLKLGDLEEAEEYYEKA------------------LELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEAL 62

                        90       100       110
                ....*....|....*....|....*....|..
gi 11024668 268 YMRARAHAEVWNAEEAKADLEKVLELEPSMRK 299
Cdd:COG3063  63 LNLAELLLELGDYDEALAYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
161-303 1.03e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.98  E-value: 1.03e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 161 EYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRNLQTKEKPWEVEWL-KLEKMINTLILNYcqc 239
Cdd:COG4785   7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALpDLAQLYYERGVAY--- 83

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11024668 240 lLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLR 303
Cdd:COG4785  84 -DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 261-304 3.45e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.08  E-value: 3.45e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 11024668  261 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRE 304
Cdd:PLN03088  33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 188-307 3.55e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 3.55e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 188 LYKLGRYDQAATKYQEAIVclrnlQTKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHHPG---IV 264
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDAL----------YWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAP 67

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 11024668 265 KAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRELRL 307
Cdd:COG1729  68 DALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 176-321 5.54e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.40  E-value: 5.54e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 176 QAVPLLHGEGNRLYKLGRYDQAATKYQEAIvclrnlqtKEKPWEVEWLklekmintliLNYCQCLLKKEEYYEVLEHTSD 255
Cdd:COG4783   2 ACAEALYALAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAF----------ALLGEILLQLGDLDEAIVLLHE 63

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 11024668 256 ILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLReLRLLESRLADKQEEERQ 321
Cdd:COG4783  64 ALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLR-LARAYRALGRPDEAIAA 128
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 185-317 1.47e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 1.47e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 185 GNRLYKLGRYDQAATKYQEAI----VCLRNLqtkekpwevewlklekmintliLNYCQCLLKKEEYYEVLEHTSDILRHH 260
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALkldpDCARAL----------------------LLLAELYLEQGDYEEAIAALERALEQD 208

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 11024668 261 PGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMrkAVLRELRLLESRLADKQE 317
Cdd:COG2956 209 PDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD--DLLLALADLLERKEGLEA 263
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 239-321 2.07e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 2.07e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 239 CLLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAvLRELRLLESRLADKQEE 318
Cdd:COG5010  63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA-YSNLAALLLSLGQDDEA 141


                ...
gi 11024668 319 ERQ 321
Cdd:COG5010 142 KAA 144
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 154-311 3.59e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.21  E-value: 3.59e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 154 LQVEAPNEYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRNLQTKEKPWEvEWLKLEKMINTLI 233
Cdd:COG3914   6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAA-AALLLLAALLELA 84

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11024668 234 LNYcqcLLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMRKAVLRELRLLESR 311
Cdd:COG3914  85 ALL---LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159
TPR_11 pfam13414
TPR repeat;
185-205 4.02e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.75  E-value: 4.02e-03
                          10        20
                  ....*....|....*....|.
gi 11024668   185 GNRLYKLGRYDQAATKYQEAI 205
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKAL 21
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
185-327 6.70e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 37.55  E-value: 6.70e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024668 185 GNRLYKLGRYDQAATKYQEAivclrnlqtkekpwevewlkLEKMINT---LILNYCQCLLKKEEYYEVLEHTSDILRHHP 261
Cdd:COG4700  96 ADALLELGRYDEAIELYEEA--------------------LTGIFADdphILLGLAQALFELGRYAEALETLEKLIAKNP 155

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 11024668 262 GI--VKAYYMRARAHAEVWNAEEAKADLEKVLELEPSMrKAVLRELRLLESRlaDKQEEERQRCRSML 327
Cdd:COG4700 156 DFksSDAHLLYARALEALGDLEAAEAELEALARRYSGP-EARYRYAKFLARQ--GRTAEAKELLEEIL 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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