|
Name |
Accession |
Description |
Interval |
E-value |
| rumA |
PRK13168 |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; |
2-431 |
0e+00 |
|
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
Pssm-ID: 237291 [Multi-domain] Cd Length: 443 Bit Score: 792.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 2 AQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRC 81
Cdd:PRK13168 1 AQFYSPKRRVTTRQIITVTIESLDHDGRGVARHNGKTVFIEGALPGERVEVQVTEDKKQYARAKVVRILKPSPERVTPRC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 82 PHFGVCGGCQQQHASVDLQQRSKSAALARLMKH-------DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS 154
Cdd:PRK13168 81 PHFGVCGGCQLQHLSIDAQIASKQRALEDLLKHlagvepeEVLPPIAGPPWGYRRRARLSVRYVPKKGQLLVGFREKNSS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 155 DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 234
Cdd:PRK13168 161 DIVDIDQCPVLVPPLSALLPPLRALLSSLSAKRRLGHVELAQGDNGTALVLRHLEPLSEADRAKLRAFAEQHGLQLYLQP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 235 DSEILETVSGEM-----PWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309
Cdd:PRK13168 241 KGPDLVHLLGPAdaqlsYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSC 389
Cdd:PRK13168 321 EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSC 400
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 16130692 390 NPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431
Cdd:PRK13168 401 NPATLARDAGVLVEAGYRLKRAGMLDMFPHTGHVESMALFER 442
|
|
| rumA |
TIGR00479 |
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ... |
24-424 |
0e+00 |
|
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129571 [Multi-domain] Cd Length: 431 Bit Score: 634.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 24 LDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRS 103
Cdd:TIGR00479 1 LDHQGEGVARFNGKTVFVPGALPGEKAEVRVTEVKKQYARARVKKILEDSPERTTPPCPHFGQCGGCQLQHLSYELQLRS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 104 KS---AALARLMKHDVSEVIADVP------WGYRRRARLSLNYLPKTQqLQMGFRKAGSSDIVDVKQCPILAPQLEALLP 174
Cdd:TIGR00479 81 KQqqvIALLERIGKFVSEPIEDVPtigddpWGYRNKARLSLGRSPSGQ-LQAGFYQKGSHDIVDVKQCPVQAPALNALLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 175 KVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDS------------------ 236
Cdd:TIGR00479 160 KVRAILENFGASRYLEHKELGQARHGVLRIGRHTGELSSVDRTALERFPHKEELDLYLQPDSpdvksicqninpektnvi 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 237 --EILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVG 313
Cdd:TIGR00479 240 fgEETEVIAGEMPIYDkSGDLSFTFSARDFIQVNSGQNEKLVDRALEWLELQGEERVLDAYCGMGTFTLPLAKQAKSVVG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 314 VEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPA 392
Cdd:TIGR00479 320 VEGVPESVEKAQQNAELNGIANVTFYHGTLETVLPKQPWAGNGFDKVLLDPPRKGcAAGVLRTIIKLKPERIVYVSCNPA 399
|
410 420 430
....*....|....*....|....*....|..
gi 16130692 393 TLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424
Cdd:TIGR00479 400 TLARDLEALCKAGYTIARVQPVDMFPHTGHVE 431
|
|
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
15-430 |
1.57e-163 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 465.03 E-value: 1.57e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQH 94
Cdd:COG2265 1 EILELTIEDLAHGGDGVARHDGKVVFVPGALPGERVRVRVTKVKKSFARAKLVEVLEPSPDRVEPPCPHFGRCGGCQLQH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 95 ASVDLQQRSKSAALARLMKH-------DVSEVI-ADVPWGYRRRARLSLNYlpKTQQLQMGFRKAGSSDIVDVKQCPILA 166
Cdd:COG2265 81 LSYEAQLELKQRVVREALERigglpevEVEPIIgSPEPWGYRNRARLSVRR--TDGRLRLGFYARGSHELVDIDECPLLD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 167 PQLEALLPKVRACLGSLQAMR-HLGHVELvqatsgtlmilrhtaplssadreklerfshsegldlyLAPDSEILETVsge 245
Cdd:COG2265 159 PALNALLPALRELLAELGARRgELRHLVV-------------------------------------RAGRDYLTERL--- 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 246 mpwydsNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ 325
Cdd:COG2265 199 ------GGLTFRISPGSFFQVNPEQAEALYAAALEWLDLTGGERVLDLYCGVGTFALPLARRAKKVIGVEIVPEAVEDAR 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 326 QNARLNGLQNVTFYHENLEEDVTKQPWaKNGFDKVLLDPARAGA-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404
Cdd:COG2265 273 ENARLNGLKNVEFVAGDLEEVLPELLW-GGRPDVVVLDPPRAGAgPEVLEALAALGPRRIVYVSCNPATLARDLALLVEG 351
|
410 420
....*....|....*....|....*.
gi 16130692 405 GYTIARLAMLDMFPHTGHLESMVLFS 430
Cdd:COG2265 352 GYRLEKVQPVDMFPHTHHVESVALLE 377
|
|
| PRK05031 |
PRK05031 |
tRNA (uracil-5-)-methyltransferase; Validated |
87-431 |
2.46e-37 |
|
tRNA (uracil-5-)-methyltransferase; Validated
Pssm-ID: 235332 Cd Length: 362 Bit Score: 139.19 E-value: 2.46e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 87 CGGCQQQHASVDLQQRSKSAALARLMKH---DVSEVIADVPWGYRRRA--RL-----SLNYLpktqqlqMgFRKaGSSDI 156
Cdd:PRK05031 1 MTPECLPPEQYEAQLAEKVARLKELFAPfsaPEPEVFRSPPSHYRMRAefRIwhegdDLYYA-------M-FDQ-QTKQR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 157 VDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI--LRHTaPLSSADREKLERFSHS-EGLDL-- 230
Cdd:PRK05031 72 IRIDQFPIASELINALMPALLAALRANPVLRHkLFQVDFLSTLSGEILVslLYHK-KLDEEWEQAAKALRDAlFNVHLig 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 231 ------YLAPDSEILETVsgempwyDSNGLRLTFSPRD--FIQVNAGVNQKMvaraLEW-LDV--QPEDRVLDLFCGMGN 299
Cdd:PRK05031 151 rsrkqkIVLDQDYVDERL-------PVAGREFIYRQVEnsFTQPNAAVNEKM----LEWaLDAtkGSKGDLLELYCGNGN 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 300 FTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEdVTKqpwAKNG----------------FDKVLLD 363
Cdd:PRK05031 220 FTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE-FTQ---AMNGvrefnrlkgidlksynFSTIFVD 295
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130692 364 PARAGA-AGVMQQIIKLEpiRIVYVSCNPATLARDSEALLKaGYTIARLAMLDMFPHTGHLESMVLFSR 431
Cdd:PRK05031 296 PPRAGLdDETLKLVQAYE--RILYISCNPETLCENLETLSQ-THKVERFALFDQFPYTHHMECGVLLEK 361
|
|
| rumB |
PRK03522 |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC; |
157-431 |
4.52e-31 |
|
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;
Pssm-ID: 235128 [Multi-domain] Cd Length: 315 Bit Score: 121.13 E-value: 4.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 157 VDVKQCPILAPQLEALLPKVRACLGSLQ------AMRH--LGHVELVQAT-SGTLM---ILRHTAPLSSADREK---LER 221
Cdd:PRK03522 22 VDLCDCPLYPASFAPVFAALKPFIARAGltpynvARKRgeLKYILLTESQsDGELMlrfVLRSETKLARLRRALpwlQAQ 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 222 FSHSEGLDLYLAP--------DSEIL--ETVSGEMPWydsNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVL 291
Cdd:PRK03522 102 LPQLKVISVNIQPvhmailegEEEIFltEQQALPERF---NGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMW 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 292 DLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFyhenLEEDVTKqpWAKNGFDK---VLLDPARAG 368
Cdd:PRK03522 179 DLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQF----QALDSTQ--FATAQGEVpdlVLVNPPRRG 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130692 369 -AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALlkAGYTIARLAMLDMFPHTGHLESMVLFSR 431
Cdd:PRK03522 253 iGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL--PGYRIERVQLFDMFPHTAHYEVLTLLVR 314
|
|
| tRNA_U5-meth_tr |
pfam05958 |
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC: ... |
98-432 |
9.92e-30 |
|
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalyzed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Pssm-ID: 428692 Cd Length: 357 Bit Score: 118.31 E-value: 9.92e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 98 DLQQRSKSAALARLMKH---DVSEVIADVPWGYRRRARLSLNYLPKTQQLQMgFRKAGSSDIVdVKQCPILAPQLEALLP 174
Cdd:pfam05958 3 DAQLAEKKSRLKALFAPfyaPDPEVFASPDKHYRMRAEFRIWHEGDDLYYAM-FDQQTKSRIR-VDQFPAASELINELMP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 175 KVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSE----ILET--VS 243
Cdd:pfam05958 81 ALIAALRQDPALRHkLFQVDFLTTLSGEALVsLLYHKQLDDEWRQAAEALRdalRAQGLDVNLIGRARkqkiVLDQdyVD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 244 GEMPWYDSNgLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDrVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK 323
Cdd:pfam05958 161 ETLPVAGRE-FIYRQVENSFTQPNAAVNIKMLEWACDVTQGSKGD-LLELYCGNGNFSLALARNFRKVLATEIAKPSVAA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 324 GQQNARLNGLQNVTFYHENLEEdVTKqpwAKNG----------------FDKVLLDPARAGAAGVMQQIIKLEPiRIVYV 387
Cdd:pfam05958 239 AQYNIAANNIDNVQIIRMSAEE-FTQ---AMNGvrefnrlkgidlksynCSTIFVDPPRAGLDPETLKLVQAYP-RILYI 313
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 16130692 388 SCNPATLARDSEALLKAgYTIARLAMLDMFPHTGHLESMVLFSRV 432
Cdd:pfam05958 314 SCNPETLCANLEQLSKT-HRVERFALFDQFPYTHHMECGVLLEKK 357
|
|
| meth_trns_rumB |
TIGR02085 |
23S rRNA (uracil-5-)-methyltransferase RumB; This family consists of RNA methyltransferases ... |
85-431 |
7.77e-28 |
|
23S rRNA (uracil-5-)-methyltransferase RumB; This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 131140 Cd Length: 374 Bit Score: 113.40 E-value: 7.77e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 85 GVCGGCQQQHASVDLQQRSKSAALARLM--KHDVSEVIADV---PWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDv 159
Cdd:TIGR02085 8 GRCRSCQWLAQPYSEQLTNKQQHLKELLapNATVVQWLAPVtsaEQAFRNKAKMVVSGSVERPILGILHRDGTPLDLCD- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 160 kqCPILAPQLEALLPKV-----RACLGSLQAMRHLGHVELVQAT----SGTLM---ILRHTAPLSSADREK---LERFSH 224
Cdd:TIGR02085 87 --CPLYPQSFQPVFAYLknfiaRAGLTPYNVAKKKGELKFILLTesenSGQLMlrfVLRSETKLAQIRRALpwlIEQLPQ 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 225 SEGLDLYLAP--------DSEILETVSGEMPwYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCG 296
Cdd:TIGR02085 165 LEVISVNIQPvhmailegEEEIFLTEQQALP-ERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 297 MGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYhenlEEDVTKQPWAKNGF-DKVLLDPARAG-AAGVMQ 374
Cdd:TIGR02085 244 VGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFA----ALDSAKFATAQMSApELVLVNPPRRGiGKELCD 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 16130692 375 QIIKLEPIRIVYVSCNPATLARDSEALlkAGYTIARLAMLDMFPHTGHLESMVLFSR 431
Cdd:TIGR02085 320 YLSQMAPKFILYSSCNAQTMAKDIAEL--SGYQIERVQLFDMFPHTSHYEVLTLLVR 374
|
|
| TRAM |
pfam01938 |
TRAM domain; This small domain has no known function. However it may perform a nucleic acid ... |
10-67 |
3.82e-14 |
|
TRAM domain; This small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation).
Pssm-ID: 396497 [Multi-domain] Cd Length: 59 Bit Score: 66.47 E-value: 3.82e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 16130692 10 RTTTRQIITVSVNDLDSFGQGVARH-NGKTLFIPGLLPQENAEVTVTEDKKQYARAKVV 67
Cdd:pfam01938 1 RRYVGQTQEVLVEGLSSNGEGIGRTdNGKVVFVPGALPGEFVEVKITKVKRNYLRGELL 59
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
289-378 |
9.32e-14 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 67.07 E-value: 9.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 289 RVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDvtkQPWAKNGFDKVLLDPARA 367
Cdd:cd02440 1 RVLDLGCGTGALALALAsGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL---PPEADESFDVIISDPPLH 77
|
90
....*....|.
gi 16130692 368 GAAGVMQQIIK 378
Cdd:cd02440 78 HLVEDLARFLE 88
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
276-407 |
9.82e-14 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 68.10 E-value: 9.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLqNVTFyhenLEEDVTKQPWAKN 355
Cdd:COG2226 12 EALLAALGLRPGARVLDLGCGTGRLALALAERGARVTGVDISPEMLELARERAAEAGL-NVEF----VVGDAEDLPFPDG 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130692 356 GFDKVLL--------DPARAgaagvMQQIIK-LEP-IRIVYVSCNPATLARDSEALLKAGYT 407
Cdd:COG2226 87 SFDLVISsfvlhhlpDPERA-----LAEIARvLKPgGRLVVVDFSPPDLAELEELLAEAGFE 143
|
|
| Methyltransf_31 |
pfam13847 |
Methyltransferase domain; This family appears to have methyltransferase activity. |
289-395 |
8.68e-12 |
|
Methyltransferase domain; This family appears to have methyltransferase activity.
Pssm-ID: 463998 [Multi-domain] Cd Length: 150 Bit Score: 62.82 E-value: 8.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 289 RVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEdvTKQPWAKNGFDKVLLDPA 365
Cdd:pfam13847 6 RVLDLGCGTGHLSFELAEELgpnAEVVGIDISEEAIEKARENAQKLGFDNVEFEQGDIEE--LPELLEDDKFDVVISNCV 83
|
90 100 110
....*....|....*....|....*....|...
gi 16130692 366 RAGAA---GVMQQIIKLEPIRIVYVSCNPATLA 395
Cdd:pfam13847 84 LNHIPdpdKVLQEILRVLKPGGRLIISDPDSLA 116
|
|
| Pcm |
COG2518 |
Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, ... |
273-372 |
3.61e-10 |
|
Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442008 [Multi-domain] Cd Length: 197 Bit Score: 59.33 E-value: 3.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEedvtkQPW 352
Cdd:COG2518 53 YIVARMLEALDLKPGDRVLEIGTGSGYQAAVLARLAGRVYSVERDPELAERARERLAALGYDNVTVRVGDGA-----LGW 127
|
90 100
....*....|....*....|.
gi 16130692 353 AKNG-FDKVLLDparAGAAGV 372
Cdd:COG2518 128 PEHApFDRIIVT---AAAPEV 145
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
290-361 |
1.53e-09 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 54.88 E-value: 1.53e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130692 290 VLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLqNVTFYHenleEDVTKQPWAKNGFDKVL 361
Cdd:pfam13649 1 VLDLGCGTGRLTLALARRGgARVTGVDLSPEMLERARERAAEAGL-NVEFVQ----GDAEDLPFPDGSFDLVV 68
|
|
| Cfa |
COG2230 |
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ... |
272-361 |
2.32e-09 |
|
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];
Pssm-ID: 441831 [Multi-domain] Cd Length: 158 Bit Score: 56.09 E-value: 2.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTK 349
Cdd:COG2230 37 EAKLDLILRKLGLKPGMRVLDIGCGWGGLALYLARRYgVRVTGVTLSPEQLEYARERAAEAGLADrVEVRLADYRDLPAD 116
|
90
....*....|..
gi 16130692 350 QPwakngFDKVL 361
Cdd:COG2230 117 GQ-----FDAIV 123
|
|
| COG3269 |
COG3269 |
Predicted RNA-binding protein, contains TRAM domain [General function prediction only]; |
15-70 |
6.79e-09 |
|
Predicted RNA-binding protein, contains TRAM domain [General function prediction only];
Pssm-ID: 442500 [Multi-domain] Cd Length: 129 Bit Score: 53.90 E-value: 6.79e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 16130692 15 QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRL 70
Cdd:COG3269 74 EEYEVEIEDIGKKGDGIARVEGFVIFVPGAEVGDRVKVKITKVKRNFAFAEVVERL 129
|
|
| PCMT |
pfam01135 |
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); |
255-340 |
9.25e-09 |
|
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT);
Pssm-ID: 395902 [Multi-domain] Cd Length: 205 Bit Score: 55.07 E-value: 9.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 255 RLTFSPRDF-----------IQVNAGVNQ-KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT---QAASVVGVEGVPA 319
Cdd:pfam01135 30 REEFVPESFksyayediplsIGYGQTISApHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARmvgEVGRVVSIEHIPE 109
|
90 100
....*....|....*....|.
gi 16130692 320 LVEKGQQNARLNGLQNVTFYH 340
Cdd:pfam01135 110 LVEIARRNLEKLGLENVIVVV 130
|
|
| PRK07580 |
PRK07580 |
Mg-protoporphyrin IX methyl transferase; Validated |
272-346 |
9.74e-09 |
|
Mg-protoporphyrin IX methyl transferase; Validated
Pssm-ID: 236059 [Multi-domain] Cd Length: 230 Bit Score: 55.61 E-value: 9.74e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130692 272 QKMVARALEWL--DVQPED-RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEED 346
Cdd:PRK07580 46 QRMRDTVLSWLpaDGDLTGlRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLaGNITFEVGDLESL 124
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
289-362 |
1.17e-07 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 50.40 E-value: 1.17e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 16130692 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARlngLQNVTFYHENLEEDvtkqPWAKNGFDKVLL 362
Cdd:COG2227 27 RVLDVGCGTGRLALALARRGADVTGVDISPEALEIARERAA---ELNVDFVQGDLEDL----PLEDGSFDLVIC 93
|
|
| rADc |
smart00650 |
Ribosomal RNA adenine dimethylases; |
274-360 |
2.03e-07 |
|
Ribosomal RNA adenine dimethylases;
Pssm-ID: 128898 Cd Length: 169 Bit Score: 50.59 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKgqqnarlngLQNVTFYHENLE---EDVTKQ 350
Cdd:smart00650 1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPR---------LREKFAAADNLTvihGDALKF 71
|
90
....*....|
gi 16130692 351 PWAKNGFDKV 360
Cdd:smart00650 72 DLPKLQPYKV 81
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
289-404 |
2.11e-07 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 51.07 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 289 RVLDLFCGMGNFTLPLATQAAS-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDvtkQPWAKNGFDKVL------ 361
Cdd:COG0500 29 RVLDLGCGTGRNLLALAARFGGrVIGIDLSPEAIALARARAAKAGLGNVEFLVADLAEL---DPLPAESFDLVVafgvlh 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 16130692 362 -LDPARAGAagVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKA 404
Cdd:COG0500 106 hLPPEEREA--LLRELARaLKPGGVLLLSASDAAAALSLARLLLL 148
|
|
| PRK08317 |
PRK08317 |
hypothetical protein; Provisional |
276-367 |
4.46e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 181382 [Multi-domain] Cd Length: 241 Bit Score: 50.71 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEkGQQNARLNGLQNVTFYHenleEDVTKQPW 352
Cdd:PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRvgpEGRVVGIDRSEAMLA-LAKERAAGLGPNVEFVR----GDADGLPF 83
|
90 100
....*....|....*....|...
gi 16130692 353 AKNGFDKV--------LLDPARA 367
Cdd:PRK08317 84 PDGSFDAVrsdrvlqhLEDPARA 106
|
|
| Trm5 |
COG2520 |
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 ... |
258-363 |
7.13e-07 |
|
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 N-methylase Trm5 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 442010 [Multi-domain] Cd Length: 333 Bit Score: 50.63 E-value: 7.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 258 FSPRdfiqvNAGVNQKMVARalewldVQPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALVEKGQQNARLNGLQ-N 335
Cdd:COG2520 163 FSPR-----LATERLRIAEL------VKPGERVLDMFAGVGPFSIPIAKrSGAKVVAIDINPDAVEYLKENIRLNKVEdR 231
|
90 100
....*....|....*....|....*....
gi 16130692 336 VTFYHenleEDVTK-QPWAKNGFDKVLLD 363
Cdd:COG2520 232 VTPIL----GDAREvAPELEGKADRIIMN 256
|
|
| COG4976 |
COG4976 |
Predicted methyltransferase, contains TPR repeat [General function prediction only]; |
272-391 |
1.13e-06 |
|
Predicted methyltransferase, contains TPR repeat [General function prediction only];
Pssm-ID: 444001 [Multi-domain] Cd Length: 181 Bit Score: 48.46 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKgqqnARLNGLQnVTFYHenleEDVTKQP 351
Cdd:COG4976 32 ALLAEELLARLPPGPFGRVLDLGCGTGLLGEALRPRGYRLTGVDLSEEMLAK----AREKGVY-DRLLV----ADLADLA 102
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 16130692 352 WAKNGFDKVLldparagAAGVMQQIIKLEPI-RIVYVSCNP 391
Cdd:COG4976 103 EPDGRFDLIV-------AADVLTYLGDLAAVfAGVARALKP 136
|
|
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
281-358 |
1.54e-06 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 48.99 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 281 WLDVQPEDRVLDLFCGMGnfTLPLA----TQAASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEdvTKQPWAKN 355
Cdd:COG4123 32 FAPVKKGGRVLDLGTGTG--VIALMlaqrSPGARITGVEIQPEAAELARRNVALNGLEDrITVIHGDLKE--FAAELPPG 107
|
...
gi 16130692 356 GFD 358
Cdd:COG4123 108 SFD 110
|
|
| RrnaAD |
pfam00398 |
Ribosomal RNA adenine dimethylase; |
270-342 |
2.15e-06 |
|
Ribosomal RNA adenine dimethylase;
Pssm-ID: 395321 [Multi-domain] Cd Length: 263 Bit Score: 48.90 E-value: 2.15e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16130692 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQqnARLNGLQNVTFYHEN 342
Cdd:pfam00398 14 KDPKVINEIVDKANLRESDTVLEIGPGKGALTVILAKRAKQVVAIEIDPRLAKLLQ--KKLSLDENLTVIHQD 84
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
279-378 |
3.43e-06 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 46.81 E-value: 3.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 279 LEWLDVQPEDRVLDLFCGMGNFTLPLA--TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVtkqpwAKNG 356
Cdd:pfam05175 24 LEHLPKDLSGKVLDLGCGAGVLGAALAkeSPDAELTMVDINARALESARENLAANGLENGEVVASDVYSGV-----EDGK 98
|
90 100
....*....|....*....|....*.
gi 16130692 357 FDKVLLDPA-RAGAA---GVMQQIIK 378
Cdd:pfam05175 99 FDLIISNPPfHAGLAttyNVAQRFIA 124
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
279-378 |
4.66e-06 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 47.11 E-value: 4.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 279 LEWLDVQPEDRVLDLFCGMGnftlPLATQAA------SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPw 352
Cdd:COG2813 42 LEHLPEPLGGRVLDLGCGYG----VIGLALAkrnpeaRVTLVDVNARAVELARANAAANGLENVEVLWSDGLSGVPDGS- 116
|
90 100 110
....*....|....*....|....*....|
gi 16130692 353 akngFDKVLLD-PARAGAA---GVMQQIIK 378
Cdd:COG2813 117 ----FDLILSNpPFHAGRAvdkEVAHALIA 142
|
|
| Methyltransf_11 |
pfam08241 |
Methyltransferase domain; Members of this family are SAM dependent methyltransferases. |
291-367 |
5.40e-06 |
|
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
Pssm-ID: 462406 [Multi-domain] Cd Length: 94 Bit Score: 44.58 E-value: 5.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 291 LDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVtfyhenlEEDVTKQPWAKNGFDKVLL-------- 362
Cdd:pfam08241 1 LDVGCGTGLLTELLARLGARVTGVDISPEMLELAREKAPREGLTFV-------VGDAEDLPFPDNSFDLVLSsevlhhve 73
|
....*
gi 16130692 363 DPARA 367
Cdd:pfam08241 74 DPERA 78
|
|
| RlmK |
COG1092 |
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
289-364 |
6.14e-06 |
|
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 48.25 E-value: 6.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 289 RVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHEN----LEEdvtkqpWAKNG--FDKV 360
Cdd:COG1092 219 RVLNLFSYTGGFSVHAAAGgAKSVTSVDLSATALEWAKENAALNGLDdRHEFVQADafdwLRE------LAREGerFDLI 292
|
....
gi 16130692 361 LLDP 364
Cdd:COG1092 293 ILDP 296
|
|
| COG4076 |
COG4076 |
Predicted RNA methylase [General function prediction only]; |
284-342 |
1.02e-05 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 443253 [Multi-domain] Cd Length: 230 Bit Score: 46.57 E-value: 1.02e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130692 284 VQPEDRVLDLFCGMGNFTLpLATQ--AASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHEN 342
Cdd:COG4076 33 VKPGDVVLDIGTGSGLLSM-LAARagAKKVYAVEVNPDIAAVARRIIAANGLsDRITVINAD 93
|
|
| ubiE |
PRK00216 |
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol ... |
277-358 |
1.40e-05 |
|
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE;
Pssm-ID: 234689 [Multi-domain] Cd Length: 239 Bit Score: 46.30 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQ-NVTFyhenLEEDVTKQPW 352
Cdd:PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVgktGEVVGLDFSEGMLAVGREKLRDLGLSgNVEF----VQGDAEALPF 117
|
....*.
gi 16130692 353 AKNGFD 358
Cdd:PRK00216 118 PDNSFD 123
|
|
| pcm |
PRK00312 |
protein-L-isoaspartate(D-aspartate) O-methyltransferase; |
274-340 |
2.29e-05 |
|
protein-L-isoaspartate(D-aspartate) O-methyltransferase;
Pssm-ID: 178974 [Multi-domain] Cd Length: 212 Bit Score: 45.20 E-value: 2.29e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130692 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYH 340
Cdd:PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRH 132
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
284-364 |
4.22e-05 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 43.78 E-value: 4.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHenleEDVTKQPWAKNGFDKVLLD 363
Cdd:COG1041 24 AKEGDTVLDPFCGTGTILIEAGLLGRRVIGSDIDPKMVEGARENLEHYGYEDADVIR----GDARDLPLADESVDAIVTD 99
|
.
gi 16130692 364 P 364
Cdd:COG1041 100 P 100
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
289-364 |
2.53e-04 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 41.84 E-value: 2.53e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130692 289 RVLDLFCGMGNFTL-PLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLeEDVTKQPWAKNGFDKVLLDP 364
Cdd:pfam03602 44 RVLDLFAGSGALGLeALSRGAKRVTLVEKDKRAVQILKENLQLLGLPGAVLVMDAL-LALLRLAGKGPVFDIVFLDP 119
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
279-364 |
3.51e-04 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 41.42 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN--VTFYHENLEEdvtkqPWAKNG 356
Cdd:PRK14968 16 AENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNngVEVIRSDLFE-----PFRGDK 90
|
....*...
gi 16130692 357 FDKVLLDP 364
Cdd:PRK14968 91 FDVILFNP 98
|
|
| arsM |
PRK11873 |
arsenite methyltransferase; |
285-345 |
4.64e-04 |
|
arsenite methyltransferase;
Pssm-ID: 237007 [Multi-domain] Cd Length: 272 Bit Score: 41.86 E-value: 4.64e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16130692 285 QPEDRVLDLFCGMGNFTLpLATQA----ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345
Cdd:PRK11873 76 KPGETVLDLGSGGGFDCF-LAARRvgptGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA 139
|
|
| Methyltr_RsmB-F |
pfam01189 |
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ... |
281-363 |
1.14e-03 |
|
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA.
Pssm-ID: 426109 [Multi-domain] Cd Length: 199 Bit Score: 40.10 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 281 WLDVQPEDRVLDLFCGMGNFT---LPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEdvTKQPWAKNGF 357
Cdd:pfam01189 3 LLAPQEGETILDMCAAPGGKTthiAELMKNQGTVVAVDINKHRLKRVAENIHRLGVTNTIILNGDGRQ--PDQWLGGVLF 80
|
....*.
gi 16130692 358 DKVLLD 363
Cdd:pfam01189 81 DRILLD 86
|
|
| PrmA |
pfam06325 |
Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal ... |
279-332 |
1.57e-03 |
|
Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Pssm-ID: 428888 [Multi-domain] Cd Length: 294 Bit Score: 40.33 E-value: 1.57e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 16130692 279 LEWLD--VQPEDRVLDLFCGMGnfTLPLA---TQAASVVGVEGVPALVEKGQQNARLNG 332
Cdd:pfam06325 152 LEALErlVKPGESVLDVGCGSG--ILAIAalkLGAKKVVGVDIDPVAVRAAKENAELNG 208
|
|
| PrmA |
COG2264 |
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis]; |
279-346 |
2.62e-03 |
|
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];
Pssm-ID: 441865 [Multi-domain] Cd Length: 284 Bit Score: 39.39 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 279 LEWLD--VQPEDRVLDLFCG----------MGnftlplatqAASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEE 345
Cdd:COG2264 139 LEALEklLKPGKTVLDVGCGsgilaiaaakLG---------AKRVLAVDIDPVAVEAARENAELNGVEDrIEVVLGDLLE 209
|
.
gi 16130692 346 D 346
Cdd:COG2264 210 D 210
|
|
| hemK_fam |
TIGR00536 |
HemK family putative methylases; The gene hemK from E. coli was found to contribute to heme ... |
285-350 |
2.78e-03 |
|
HemK family putative methylases; The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase. Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. [Protein fate, Protein modification and repair]
Pssm-ID: 273125 [Multi-domain] Cd Length: 284 Bit Score: 39.26 E-value: 2.78e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16130692 285 QPEDRVLDLFCGMGNFTLPLAT--QAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQ 350
Cdd:TIGR00536 113 PPILHILDLGTGSGCIALALAYefPNAEVIAVDISPDALAVAEENAEKNQLeHRVEFIQSNLFEPLAGQ 181
|
|
| YtxK |
COG0827 |
Adenine-specific DNA N6-methylase [Replication, recombination and repair]; |
274-342 |
5.44e-03 |
|
Adenine-specific DNA N6-methylase [Replication, recombination and repair];
Pssm-ID: 440589 [Multi-domain] Cd Length: 327 Bit Score: 38.78 E-value: 5.44e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16130692 274 MVARALEWLDVQPEDRVLDLFCGMGNF---TLPLATQAASVVGVEGVPALVEKGQQNARLNGlQNVTFYHEN 342
Cdd:COG0827 103 LIGYLVEKFTKKEGLRILDPAVGTGNLlttVLNQLKKKVNAYGVEVDDLLIRLAAVLANLQG-HPVELFHQD 173
|
|
| RsmB |
COG0144 |
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ... |
274-363 |
6.17e-03 |
|
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 439914 [Multi-domain] Cd Length: 441 Bit Score: 38.84 E-value: 6.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130692 274 MVARALewlDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFyhenLEEDVTK- 349
Cdd:COG0144 240 LVALLL---DPKPGERVLDLCAAPGGKTLHLAELMgnkGRVVAVDISEHRLKRLRENLARLGLSNVEV----VVADAREl 312
|
90
....*....|....
gi 16130692 350 QPWAKNGFDKVLLD 363
Cdd:COG0144 313 LEWLPGKFDRVLLD 326
|
|
| |
