RecName: Full=NACHT, LRR and PYD domains-containing protein 4; AltName: Full=Cancer/testis antigen 58; Short=CT58; AltName: Full=PAAD and NACHT-containing protein 2; Short=PAN2; AltName: Full=PYRIN and NACHT-containing protein 2; AltName: Full=PYRIN-containing APAF1-like protein 4; Short=PYPAF4; AltName: Full=Ribonuclease inhibitor 2
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
NACHT | pfam05729 | NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
149-318 | 6.94e-53 | ||||
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931. : Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 182.12 E-value: 6.94e-53
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Pyrin_NALPs | cd08320 | Pyrin death domain found in NALP proteins; Pyrin Death Domain found in NALP (NACHT, LRR and ... |
11-92 | 5.08e-40 | ||||
Pyrin death domain found in NALP proteins; Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLAR (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly of the 'inflammasome', a multiprotein platform which is formed in response to infection or injury and is responsible for caspase-1 activation and regulation of IL-1beta maturation. NALP1-inflammasomes recognize specific substances while NALP3-inflammasomes responds to many diverse triggers. Mutations in the NALP3 gene are associated with a broad spectrum of autoinflammatory disorders including Muckle-Wells Syndrome (MWS), familial cold autoinflammatory syndrome (FCAS), and chronic neurologic cutaneous and articular syndrome (CINCA). NALP12 functions as a negative regulator of inflammation. In general, Pyrin is a subfamily of the Death Domain (DD) superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. : Pssm-ID: 260032 Cd Length: 84 Bit Score: 142.38 E-value: 5.08e-40
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PPP1R42 super family | cl42388 | protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
724-957 | 1.64e-32 | ||||
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation. The actual alignment was detected with superfamily member cd00116: Pssm-ID: 455733 [Multi-domain] Cd Length: 319 Bit Score: 129.01 E-value: 1.64e-32
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NLRC4_HD2 | pfam17776 | NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
452-568 | 1.66e-27 | ||||
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein. : Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 108.15 E-value: 1.66e-27
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NOD2_WH | pfam17779 | NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular ... |
395-450 | 5.01e-12 | ||||
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular function is not known. : Pssm-ID: 465501 Cd Length: 57 Bit Score: 61.43 E-value: 5.01e-12
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PPP1R42 super family | cl42388 | protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
630-733 | 3.23e-03 | ||||
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation. The actual alignment was detected with superfamily member cd00116: Pssm-ID: 455733 [Multi-domain] Cd Length: 319 Bit Score: 40.80 E-value: 3.23e-03
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Name | Accession | Description | Interval | E-value | ||||||
NACHT | pfam05729 | NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
149-318 | 6.94e-53 | ||||||
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931. Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 182.12 E-value: 6.94e-53
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Pyrin_NALPs | cd08320 | Pyrin death domain found in NALP proteins; Pyrin Death Domain found in NALP (NACHT, LRR and ... |
11-92 | 5.08e-40 | ||||||
Pyrin death domain found in NALP proteins; Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLAR (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly of the 'inflammasome', a multiprotein platform which is formed in response to infection or injury and is responsible for caspase-1 activation and regulation of IL-1beta maturation. NALP1-inflammasomes recognize specific substances while NALP3-inflammasomes responds to many diverse triggers. Mutations in the NALP3 gene are associated with a broad spectrum of autoinflammatory disorders including Muckle-Wells Syndrome (MWS), familial cold autoinflammatory syndrome (FCAS), and chronic neurologic cutaneous and articular syndrome (CINCA). NALP12 functions as a negative regulator of inflammation. In general, Pyrin is a subfamily of the Death Domain (DD) superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. Pssm-ID: 260032 Cd Length: 84 Bit Score: 142.38 E-value: 5.08e-40
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
724-957 | 1.64e-32 | ||||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 129.01 E-value: 1.64e-32
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PYRIN | pfam02758 | PAAD/DAPIN/Pyrin domain; This domain is predicted to contain 6 alpha helices and to have the ... |
10-85 | 2.08e-30 | ||||||
PAAD/DAPIN/Pyrin domain; This domain is predicted to contain 6 alpha helices and to have the same fold as the pfam00531 domain. This similarity may mean that this is a protein-protein interaction domain. Pssm-ID: 460678 Cd Length: 76 Bit Score: 114.61 E-value: 2.08e-30
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NLRC4_HD2 | pfam17776 | NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
452-568 | 1.66e-27 | ||||||
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein. Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 108.15 E-value: 1.66e-27
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RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
676-945 | 2.67e-27 | ||||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 116.04 E-value: 2.67e-27
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NACHT | COG5635 | Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
149-514 | 1.64e-15 | ||||||
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 81.39 E-value: 1.64e-15
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NOD2_WH | pfam17779 | NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular ... |
395-450 | 5.01e-12 | ||||||
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular function is not known. Pssm-ID: 465501 Cd Length: 57 Bit Score: 61.43 E-value: 5.01e-12
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LRR_RI | smart00368 | Leucine rich repeat, ribonuclease inhibitor type; |
806-833 | 2.33e-03 | ||||||
Leucine rich repeat, ribonuclease inhibitor type; Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 36.23 E-value: 2.33e-03
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AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
147-279 | 2.82e-03 | ||||||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.28 E-value: 2.82e-03
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LRR_6 | pfam13516 | Leucine Rich repeat; |
862-885 | 3.15e-03 | ||||||
Leucine Rich repeat; Pssm-ID: 463907 [Multi-domain] Cd Length: 24 Bit Score: 35.67 E-value: 3.15e-03
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
630-733 | 3.23e-03 | ||||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 40.80 E-value: 3.23e-03
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Name | Accession | Description | Interval | E-value | ||||||
NACHT | pfam05729 | NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
149-318 | 6.94e-53 | ||||||
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931. Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 182.12 E-value: 6.94e-53
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Pyrin_NALPs | cd08320 | Pyrin death domain found in NALP proteins; Pyrin Death Domain found in NALP (NACHT, LRR and ... |
11-92 | 5.08e-40 | ||||||
Pyrin death domain found in NALP proteins; Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLAR (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly of the 'inflammasome', a multiprotein platform which is formed in response to infection or injury and is responsible for caspase-1 activation and regulation of IL-1beta maturation. NALP1-inflammasomes recognize specific substances while NALP3-inflammasomes responds to many diverse triggers. Mutations in the NALP3 gene are associated with a broad spectrum of autoinflammatory disorders including Muckle-Wells Syndrome (MWS), familial cold autoinflammatory syndrome (FCAS), and chronic neurologic cutaneous and articular syndrome (CINCA). NALP12 functions as a negative regulator of inflammation. In general, Pyrin is a subfamily of the Death Domain (DD) superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. Pssm-ID: 260032 Cd Length: 84 Bit Score: 142.38 E-value: 5.08e-40
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
724-957 | 1.64e-32 | ||||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 129.01 E-value: 1.64e-32
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
686-957 | 2.98e-32 | ||||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 128.24 E-value: 2.98e-32
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PYRIN | pfam02758 | PAAD/DAPIN/Pyrin domain; This domain is predicted to contain 6 alpha helices and to have the ... |
10-85 | 2.08e-30 | ||||||
PAAD/DAPIN/Pyrin domain; This domain is predicted to contain 6 alpha helices and to have the same fold as the pfam00531 domain. This similarity may mean that this is a protein-protein interaction domain. Pssm-ID: 460678 Cd Length: 76 Bit Score: 114.61 E-value: 2.08e-30
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NLRC4_HD2 | pfam17776 | NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein ... |
452-568 | 1.66e-27 | ||||||
NLRC4 helical domain HD2; This entry represents a helical domain found in the NLRC4 protein and NOD2 protein. Pssm-ID: 465499 [Multi-domain] Cd Length: 122 Bit Score: 108.15 E-value: 1.66e-27
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RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
676-945 | 2.67e-27 | ||||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 116.04 E-value: 2.67e-27
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RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
672-976 | 5.37e-27 | ||||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 115.27 E-value: 5.37e-27
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
667-903 | 1.82e-25 | ||||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 108.21 E-value: 1.82e-25
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RNA1 | COG5238 | Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
779-987 | 1.48e-16 | ||||||
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 83.30 E-value: 1.48e-16
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Pyrin_ASC-like | cd08321 | Pyrin Death Domain found in ASC; Pyrin Death Domain found in ASC (Apoptosis-associated ... |
11-84 | 3.42e-16 | ||||||
Pyrin Death Domain found in ASC; Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Included in this family is human PYNOD (also known as NLRP10 or NOD8) which via its Pyrin domain suppresses oligomerization of ASC, and ASC-mediated NF-kappaB activation. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD and Death Effector Domain (DED). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. Pssm-ID: 260033 Cd Length: 82 Bit Score: 74.10 E-value: 3.42e-16
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NACHT | COG5635 | Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
149-514 | 1.64e-15 | ||||||
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 81.39 E-value: 1.64e-15
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NOD2_WH | pfam17779 | NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular ... |
395-450 | 5.01e-12 | ||||||
NOD2 winged helix domain; This winged helix domain is found in the NOD2 protein. Its molecular function is not known. Pssm-ID: 465501 Cd Length: 57 Bit Score: 61.43 E-value: 5.01e-12
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Pyrin | cd08305 | Pyrin: a protein-protein interaction domain; The Pyrin domain (or PYD), also called DAPIN or ... |
11-85 | 2.66e-06 | ||||||
Pyrin: a protein-protein interaction domain; The Pyrin domain (or PYD), also called DAPIN or PAAD, is a subfamily of the Death Domain (DD) superfamily and it functions in several signaling pathways. The Pyrin domain is found at the N-terminus of a variety of proteins and serves as a linker that recruits other domains into signaling complexes. Pyrin-containing proteins include NALPs, ASC (Apoptosis-associated speck-like protein containing a CARD), and the interferon-inducible p200 (IFI-200) family of proteins which includes the human IFI-16, myeloid cell nuclear differentiation antigen (MNDA) and absent in melanoma (AIM) 2. NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. ASC and NALPs are involved in the regulation of inflammation. ASC, NALP1 and NALP3 are involved in the assembly of the 'inflammasome', a multiprotein platform which is formed in response to infection or injury and is responsible for caspase-1 activation and regulation of IL-1beta maturation. NALP12 functions as a negative regulator of inflammation. The p200 proteins are involved in the regulation of cell cycle and differentiation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including Caspase activation and recruitment domain (CARD) and Death Effector Domain (DED). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. Pssm-ID: 260019 Cd Length: 73 Bit Score: 45.76 E-value: 2.66e-06
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LRR | COG4886 | Leucine-rich repeat (LRR) protein [Transcription]; |
724-933 | 6.78e-04 | ||||||
Leucine-rich repeat (LRR) protein [Transcription]; Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 43.38 E-value: 6.78e-04
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LRR_RI | smart00368 | Leucine rich repeat, ribonuclease inhibitor type; |
806-833 | 2.33e-03 | ||||||
Leucine rich repeat, ribonuclease inhibitor type; Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 36.23 E-value: 2.33e-03
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AAA_16 | pfam13191 | AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
130-208 | 2.60e-03 | ||||||
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 39.79 E-value: 2.60e-03
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AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
147-279 | 2.82e-03 | ||||||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.28 E-value: 2.82e-03
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LRR_6 | pfam13516 | Leucine Rich repeat; |
862-885 | 3.15e-03 | ||||||
Leucine Rich repeat; Pssm-ID: 463907 [Multi-domain] Cd Length: 24 Bit Score: 35.67 E-value: 3.15e-03
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LRR_RI | cd00116 | Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
630-733 | 3.23e-03 | ||||||
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 40.80 E-value: 3.23e-03
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Blast search parameters | ||||
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