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Conserved domains on  [gi|1613838321|gb|QBZ71289|]
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restriction endonuclease [Raoultella phage RP180]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VRR-NUC-like cd22365
Virus-type replication repair nuclease; This model characterizes a set of nucleases that ...
 3-94 9.53e-55

Virus-type replication repair nuclease; This model characterizes a set of nucleases that resemble Holliday-junction resolving enzymes. They belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.


:

Pssm-ID: 411769  Cd Length: 92  Bit Score: 164.55  E-value: 9.53e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613838321  3 TPEGKIQKYAKERFEALGGLVRKLSYEGRSGAPDLLVILPGGIVWFVEVKKDENTKPDPHQLREHERMRKRGANVFVVGS 82
Cdd:cd22365    1 TPEGEVQTYLKRRFKAQGGLIRKLSYEGRAGAPDLIIIIPRGHVLFVEVKKDENTKPEPHQLREHERMRKRGADVRVIGS 80

                         90
                 ....*....|..
gi 1613838321 83 FKQVDDLIANYY 94
Cdd:cd22365   81 IDQVDSLIAEYI 92
 
Name Accession Description Interval E-value
VRR-NUC-like cd22365
Virus-type replication repair nuclease; This model characterizes a set of nucleases that ...
 3-94 9.53e-55

Virus-type replication repair nuclease; This model characterizes a set of nucleases that resemble Holliday-junction resolving enzymes. They belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.


Pssm-ID: 411769  Cd Length: 92  Bit Score: 164.55  E-value: 9.53e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613838321  3 TPEGKIQKYAKERFEALGGLVRKLSYEGRSGAPDLLVILPGGIVWFVEVKKDENTKPDPHQLREHERMRKRGANVFVVGS 82
Cdd:cd22365    1 TPEGEVQTYLKRRFKAQGGLIRKLSYEGRAGAPDLIIIIPRGHVLFVEVKKDENTKPEPHQLREHERMRKRGADVRVIGS 80

                         90
                 ....*....|..
gi 1613838321 83 FKQVDDLIANYY 94
Cdd:cd22365   81 IDQVDSLIAEYI 92
VRR_NUC smart00990
This model contains proteins with the VRR-NUC domain; It is associated with members of the PD- ...
 17-83 2.06e-08

This model contains proteins with the VRR-NUC domain; It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.


Pssm-ID: 214959  Cd Length: 108  Bit Score: 47.50  E-value: 2.06e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1613838321   17 EALGGLVRKLS---YEGRSGAPDLLVILP-GGIVWFVEVKKdENTKPDPHQLREHERMRKRGANVFVVGSF 83
Cdd:smart00990  38 KALKGIAGRFAsdyPGLRGGVPDLILFLPqDGRYRFVEVKG-PGDRLSPLQKRWIDRLAGLGFRVEVCDVV 107
 
Name Accession Description Interval E-value
VRR-NUC-like cd22365
Virus-type replication repair nuclease; This model characterizes a set of nucleases that ...
 3-94 9.53e-55

Virus-type replication repair nuclease; This model characterizes a set of nucleases that resemble Holliday-junction resolving enzymes. They belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.


Pssm-ID: 411769  Cd Length: 92  Bit Score: 164.55  E-value: 9.53e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1613838321  3 TPEGKIQKYAKERFEALGGLVRKLSYEGRSGAPDLLVILPGGIVWFVEVKKDENTKPDPHQLREHERMRKRGANVFVVGS 82
Cdd:cd22365    1 TPEGEVQTYLKRRFKAQGGLIRKLSYEGRAGAPDLIIIIPRGHVLFVEVKKDENTKPEPHQLREHERMRKRGADVRVIGS 80

                         90
                 ....*....|..
gi 1613838321 83 FKQVDDLIANYY 94
Cdd:cd22365   81 IDQVDSLIAEYI 92
VRR_NUC smart00990
This model contains proteins with the VRR-NUC domain; It is associated with members of the PD- ...
 17-83 2.06e-08

This model contains proteins with the VRR-NUC domain; It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.


Pssm-ID: 214959  Cd Length: 108  Bit Score: 47.50  E-value: 2.06e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1613838321   17 EALGGLVRKLS---YEGRSGAPDLLVILP-GGIVWFVEVKKdENTKPDPHQLREHERMRKRGANVFVVGSF 83
Cdd:smart00990  38 KALKGIAGRFAsdyPGLRGGVPDLILFLPqDGRYRFVEVKG-PGDRLSPLQKRWIDRLAGLGFRVEVCDVV 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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