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Conserved domains on  [gi|2056231305|gb|QWW04364|]
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hypothetical protein KRP68_20130 [Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal610]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PulD super family cl43419
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 2-40 7.11e-05

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG1450:

Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 38.36  E-value: 7.11e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2056231305   2 TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40
Cdd:COG1450   234 STTGGGNGLPTINKREISTTVRVKDGQTVVLGGLIRDEE 272
 
Name Accession Description Interval E-value
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 2-40 7.11e-05

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 38.36  E-value: 7.11e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2056231305   2 TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40
Cdd:COG1450   234 STTGGGNGLPTINKREISTTVRVKDGQTVVLGGLIRDEE 272
Secretin pfam00263
Bacterial type II and III secretion system protein;
5-40 3.97e-04

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 35.96  E-value: 3.97e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2056231305   5 TGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40
Cdd:pfam00263  83 NGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEED 118
 
Name Accession Description Interval E-value
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 2-40 7.11e-05

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 38.36  E-value: 7.11e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2056231305   2 TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40
Cdd:COG1450   234 STTGGGNGLPTINKREISTTVRVKDGQTVVLGGLIRDEE 272
Secretin pfam00263
Bacterial type II and III secretion system protein;
5-40 3.97e-04

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 35.96  E-value: 3.97e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2056231305   5 TGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40
Cdd:pfam00263  83 NGGNGVPTINTREISTTVRVKDGQTVVIGGLIQEED 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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