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Conserved domains on  [gi|2062562481|gb|QXG07356|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Perisoreus canadensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.77e-162

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.98  E-value: 2.77e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGQWDITQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHVNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2062562481 321 VNTSIAVLTTLSIMLLPISPMLSNII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.77e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.98  E-value: 2.77e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGQWDITQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHVNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2062562481 321 VNTSIAVLTTLSIMLLPISPMLSNII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.05e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.38  E-value: 3.05e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQL--------THPT 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  94 SSLI---LTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPT------LLTTMAILSVAL 164
Cdd:pfam00361  81 LLLLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 165 GGWMGLNQTQTRKIMAFSSISHLGWMAIIL----VYYPKLTLLNFYMYSVMTAAVFLTLNS-----TKTLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2062562481 236 KAPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 6.91e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 99.04  E-value: 6.91e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAwSTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  90 ---THPTSSLILTAAISM-------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMK----FPPITLLFMTSQSLNP---T 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 153 LLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTL--LNFYM--YSVMTAAVFLTL-----NSTK 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVIlllsrKGGE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2062562481 224 TLKLSTLMTAWTKAPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMI 281
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 2.79e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.16  E-value: 2.79e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQLTH- 91
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  92 -----PTSSLILTAAISM------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMK---FPPITLLFMTSQS----LNPTL 153
Cdd:TIGR01770 192 lsngmLNISLLLLGIVLIlvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 154 LTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGW--MAIILVYYPKLTLLNFY--MYSVMTAAVFLTLNSTKTLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2062562481 227 ---LSTLMTAWTKAPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.77e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.98  E-value: 2.77e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGQWDITQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTTMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHVNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2062562481 321 VNTSIAVLTTLSIMLLPISPMLSNII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.58e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 373.87  E-value: 1.58e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGQWDITQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTTMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHVNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 2062562481 321 VNTSIAVLTTLSIMLLPISPMLSNII 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-342 1.23e-128

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 371.83  E-value: 1.23e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGQWDITQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSlNPTLLTTMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHVNKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|...
gi 2062562481 321 VNTS-IAVLTTLSIMLLPISPML 342
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAI 342
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 2.36e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 335.28  E-value: 2.36e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGQWDITQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTTMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWHVNK 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                         330       340
                  ....*....|....*....|....*..
gi 2062562481 320 PVNTS-IAVLTTLSIMLLPISPMLSNI 345
Cdd:MTH00105  320 TKPMTlLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-343 1.42e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 282.63  E-value: 1.42e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGQWDITQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTTMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHVNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|...
gi 2062562481 321 VNTSIAVLTTLSIMLLPISPMLS 343
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLL 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.29e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 246.00  E-value: 3.29e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGQWDITQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTTMAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHVNKP 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330
                  ....*....|....*.
gi 2062562481 321 VNTSIAVLTTLSIMLL 336
Cdd:MTH00041  321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 9.28e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 179.63  E-value: 9.28e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWS 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  81 TGqwditqLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTsqsLNPTLLTTMAIL 160
Cdd:MTH00160   82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 241 NTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMILSLLSLLGLFFYLRLAYCAtITLPPHTTNHMKQWHvNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKK-KNK 310

                         330       340
                  ....*....|....*....|....*
gi 2062562481 321 VNTSIAVLTTLSIMLLPISPMLSNI 345
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 4.96e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 151.58  E-value: 4.96e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   5 AKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  85 DitqlthptSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNP-TLLTTMAILSVA 163
Cdd:MTH00144   85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 164 LGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLnSTKTLKLSTLMTAWTKAPSLNTI 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2062562481 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 7.81e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.09  E-value: 7.81e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   7 LIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSmtnawsTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  87 TQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTTMAILSVALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 167 WMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSLNTILLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260
                  ....*....|....*....|....*....
gi 2062562481 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 1.60e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 131.33  E-value: 1.60e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   8 IFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  88 qLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLfmTSQSLNPTLLTTMAILSVALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 168 MGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLNFYMYSVMTAAVFLTLNSTKTLKLSTLMTAWTKAPSLNTILLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260
                  ....*....|....*....|...
gi 2062562481 248 LLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 4.76e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.26  E-value: 4.76e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDI----- 86
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  87 --------TQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFmtSQSLNPTLLTTMA 158
Cdd:MTH00196   82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 159 ILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYP----KLTLLNFYMYSVMTAAVF---LTLNSTKTL--KLST 229
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNLiiEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 2062562481 230 LMtawTKAPSLNTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.05e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 97.38  E-value: 3.05e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQL--------THPT 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  94 SSLI---LTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPT------LLTTMAILSVAL 164
Cdd:pfam00361  81 LLLLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 165 GGWMGLNQTQTRKIMAFSSISHLGWMAIIL----VYYPKLTLLNFYMYSVMTAAVFLTLNS-----TKTLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2062562481 236 KAPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 6.91e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 99.04  E-value: 6.91e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLF-SSMTNAwSTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  90 ---THPTSSLILTAAISM-------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMK----FPPITLLFMTSQSLNP---T 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 153 LLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTL--LNFYM--YSVMTAAVFLTL-----NSTK 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVIlllsrKGGE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2062562481 224 TLKLSTLMTAWTKAPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMI 281
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 3.21e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.93  E-value: 3.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   8 IFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  87 ----TQLTHPTSSLILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPTLLTtmAILSV 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 163 ALGGWMGLNQTQTRKIMAFSSISHLGW----MAIILVYYPKLTLLNFYMYSVMTAAVF---LTLNSTKTLkLSTLMTAWT 235
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSR 337

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2062562481 236 KAPSLNTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 2.79e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.16  E-value: 2.79e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQLTH- 91
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  92 -----PTSSLILTAAISM------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMK---FPPITLLFMTSQS----LNPTL 153
Cdd:TIGR01770 192 lsngmLNISLLLLGIVLIlvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 154 LTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGW--MAIILVYYPKLTLLNFY--MYSVMTAAVFLTLNSTKTLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYifIYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2062562481 227 ---LSTLMTAWTKAPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-281 6.57e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 90.27  E-value: 6.57e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQL--- 89
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  90 --THPTSSLILTAAISM-------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMK---FPPIT-LLFMTSQSLNPT---L 153
Cdd:PRK05777  193 laDGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 154 LTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWM--AIILVYYPKLTLLNFYM--YSVMTAAVF--LTLNSTKTLKL 227
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFgvISLLRRKGGEA 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2062562481 228 STL----MTAWTKaPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMI 281
Cdd:PRK05777  353 ESIsdfaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-192 8.56e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.44  E-value: 8.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   3 PQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  74 SMTNAWSTGQ----WDITQLTHPTSS----------LILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2062562481 140 TLLfmTSQSLNPTLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:MTH00198  347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-281 5.82e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 78.27  E-value: 5.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQLTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  93 TSSL----------ILTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPI-------TLLFMTSQSLNP-TLL 154
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 155 TTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILVYYPKLTLLN--FYM--YSVMTAAVFLT----LNSTKTLK 226
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGalFHLlnHALAKALLFLAagaiERATGTRD 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2062562481 227 LSTLMTAWTKAPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAMI 281
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAV 410
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-195 8.10e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.18  E-value: 8.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   7 LIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASTLVLFS-SMTNAWSTGQW 84
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  85 DI---------TQLTHPTSSLI----LTAAISMKLGLAPFHFWFPEVLQGSPL-----------TTGLLLSTVMkfppIT 140
Cdd:CHL00049  194 ELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTpvvaflsvtskVAASALATRI----FD 269

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2062562481 141 LLFMTSQSLNPTLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILV 195
Cdd:CHL00049  270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGII 324
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-195 1.63e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.07  E-value: 1.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  50 PRAIEAATKYFLVQAAASTLVLF-SSMTNAWSTGQwdiTQLTHPTSSLI-------------LTAAISMKLGLAPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 116 PEVLQGSPLTTGLLLSTVMKFP----PITLLFMTSQSLNP---TLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                  ....*..
gi 2062562481 189 WMAIILV 195
Cdd:PRK02504  314 FVMIGLV 320
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 7.51e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 56.63  E-value: 7.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  49 HPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQW--DITQLTHPTSS--------LILTAAISMKLGLAPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPltaqlllfLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 119 LQGSPLTTGLLLSTVM---------KFPpITLLFMTSQSLNPTLLTtMAILSVALGGWMGLNQTQTRKIMAFSSISHLGW 189
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                  ...
gi 2062562481 190 MAI 192
Cdd:COG1008   314 VLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.74e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.87  E-value: 1.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLVLFS---------SMTNAWSTGQWDITQLTHPTSSL-ILTAA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 102 ISMKLGLAPFHFWFPEVLQGSP--LTTGLLLSTVMKFPPITLLFMT--SQSLNPT----LLTTMAILSVALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 174 QTRKIMAFSSISHLGWM----AIILVYYPKLTLLNFYM------------YSVMTAAVFLT----LNSTKTLKLSTLMTA 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglGVGLAALGDPAMASYGEialaggiyhivnHALYKALLFLTagavIYETGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2062562481 234 WTKAPSLNTILLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 2.44e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.06  E-value: 2.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------STLVLFSSMTNAWSTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  87 TQLTHPTSSL---ILTAAISM-------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPT---- 152
Cdd:PRK08676  191 TELAAHASLLspsVLGASFLFifigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2062562481 153 ----LLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-279 8.42e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 50.26  E-value: 8.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-SMTNAwSTGQWDITQLTH--PTSSLILTA------AIS 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 104 MKLGLAPFHFWFPEVLQG-SPLTTGLLLSTVMK----------FPPITLLFMTSQSLNpTLLTTMAILSVALGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyaliriyFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 173 TQTRKIMAFSSISHLGWMAIILVYYPKLTLLN--FYM--YSVMTAAVFLTLNS----TKTLKLSTLMTAWTKAPSLNTIL 244
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAievtYGTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2062562481 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAA 279
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVL 407
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 9.18e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.38  E-value: 9.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   2 NPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASTLVLFSSMTNAWST 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  82 GQWDIT-------QLTHPTSSLI----LTAAISMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMK------FPPITLLFM 144
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygFLLVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 145 TSQSLN--------PTL---LTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWmaiILVYYPKLTLLNFY--MYSVM 211
Cdd:PRK08668  255 GTKLFSefgtyrgvPLFnyiLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFAggLFHVF 331

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2062562481 212 TAAVFLTL---------NSTKTLKLSTLMTAWTKAPSLNTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668  332 NHALFKGLfflifaaviYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 9.32e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.32  E-value: 9.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  50 PRAIEAATKYFLVQAAASTLVLFS----SMTNAWSTGQWDITQLTHPTSS-----LILTAAISMKLGLAPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 119 ---LQGSPLTTGLLLST----VMKFpPITLLFMTSQSLNPtLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMA 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 192 IILVYYPKLTLLN--FYMYS--VMTAAVFLTL----NSTKTLKLSTLMTAWTKAPSLNTILLLTLLSLAGLPPLTGFLPK 263
Cdd:TIGR01972 310 LGIFSFNELGISGavFQMIShgLITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389


                  ....*
gi 2062562481 264 WLIIQ 268
Cdd:TIGR01972 390 FLILL 394
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 4.72e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 43.40  E-value: 4.72e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2062562481 295 RLAYCATITLPPHTTNHMKQWHVNKPVNT-SIAVLTTLSIMLLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 7.81e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.62  E-value: 7.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   8 IFVTSLLLgttiTISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYF---------------LVQAAASTLVLF 72
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  73 SSMTNAWSTgqwDITQLTHPTSSLILTAAISM------KLGLAPFHFWFPEVLQGSP-----LTTGLLLST----VMKFP 137
Cdd:PRK06458  192 GEMAILWTE---LLKHASLLDPTLMKLAFVFLligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRYY 268

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2062562481 138 PITLLFMTSQSLNPtLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK06458  269 ILIDAAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 8.81e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.95  E-value: 8.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFS-----SMTNAWSTGqwDITQLTHP--------TSSLILT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 100 AAISMKLGLAPFHFWFPEVLQGSPLTTGLLLS----TVMKFPPITL--------LFMTSQSLNpTLLTTMAILSVALGGW 167
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 168 MGLNQTQTRKIMAFSSISHLGW--MAIILVYYPKLTLLNFYM--YSVMTAAVFLTLNSTK----TLKLSTLMTAWTKAPS 239
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYiiLAVSLNTYYGLAAAVAYIvnHSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 2062562481 240 LNTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 9.12e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.53  E-value: 9.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  96 LILTAAISmKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLL------FMTSQSLNPTLLTtMAILSVALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 170 LNQTQTRKIMAFSSISHLGWMaIILVYYPK-------LTLLnfYMYSVMTAAVFLTL----NSTKTLKLSTLMTAWTKAP 238
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFL-TVLVGIGTrdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQP 362

                         170       180
                  ....*....|....*....|....*
gi 2062562481 239 SLNTILLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  363 VLAVVAALAAASMAGLPPLLGFVAK 387
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 1.71e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.15  E-value: 1.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  55 AATKYFLVQAAASTLVLFSSMTNAWSTG--QWDITQLTHPT----SSLILTAAISMKLG----LAPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLRSHTlplsTQLLLLAPILVGFGikipLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2062562481 124 LTTGLLLSTVMKFPPITLL------FMTSQSLNPTLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWM 190
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 1.83e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.27  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  50 PRAIEAATKYFLVQAAASTLVLFSSMT----NAWSTGQWDITQLTHPTSS--------LILTAAISMKLGLAPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 118 VLQGSPLTTGLLLSTVMK--------------FPPITLLFMTsqslnptLLTTMAILSVALGGWMGLNQTQTRKIMAFSS 183
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILLkmgaygllrfslplFPDASHEFAP-------IIITLGVIAIIYGALVALAQTDIKKLIAYSS 309


                  ....*....
gi 2062562481 184 ISHLGWMAI 192
Cdd:PRK05846  310 ISHMGFVTL 318
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 3.11e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.60  E-value: 3.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 101 AISMKLGLAPFHFWFPEV-----LQGSPLTTGLLLS------TVMKFPpitLLFMTSQSLNPTLLtTMAILSVALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*.
gi 2062562481 170 LNQTQTRKIMAFSSISHLGWMAIILV 195
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 3.13e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.33  E-value: 3.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  55 AATKYFLVQAAASTLVLFSSMTNAWSTGQ--WDITQLT--HPTSSLILTA------AISMKLGLAPFHFWFPEV-----L 119
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyagfliAFGVKLPIFPLHTWLPDAhgeasA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2062562481 120 QGSPLTTGLLLstvmKFPPITLLFMTSQSLNPT------LLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK12561  218 PVSMILAGVLL----KMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 3.32e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.33  E-value: 3.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  34 EINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQ-----LTHPTSSLILTAAISMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 109 A------PFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNP--------TLLTTMAILSVALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 175 TRKIMAFSSISHLGWMAIILVYYPKLT----LLNFYMYSVMTAAVFL----TLNSTKTLKLSTLMTAWTKAPSLNTILLL 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260
                  ....*....|....*....|..
gi 2062562481 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-268 6.37e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.47  E-value: 6.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  53 IEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQL-----------THPTSSLILTAAISMKLGLAPFhFWFPEVLQG 121
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndmgdtaTLTTIALLFLLAFGMKAALFPF-MWLPAAYHT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 122 SPLTTGLLLSTVMK-------FPPITLLFMTSQSLNPTLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIil 194
Cdd:PRK12663  236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILL-- 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 195 vyypKLTLLN--------FYMYSVMT--AAVFLTLNSTKTL----KLSTLMTAWTKAPSLNTILLLTLLSLAGLPPLTGF 260
Cdd:PRK12663  314 ----GLALGTpagingaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGF 389


                  ....*...
gi 2062562481 261 LPKWLIIQ 268
Cdd:PRK12663  390 WGKVLLVQ 397
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-194 6.46e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 41.68  E-value: 6.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   7 LIFVTSLLLgttITISSNHWVMaWTGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWD 85
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  86 ITQL-----THPTSSLILTAAISM------KLGLAPFHFWFPEVLQG----SPL-------TTGLLLstVMKFPPITllf 143
Cdd:COG1009   194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLSPLF--- 268

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2062562481 144 mtsqSLNPTLLTTMAILSVA---LGGWMGLNQTQTRKIMAFSSISHLGWMAIIL 194
Cdd:COG1009   269 ----ALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK12650 PRK12650
DUF4040 family protein;
29-263 1.17e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.80  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  29 AWtglEINTLAILPLISKSHhPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQLTHPTS---SLILTAAISMK 105
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 106 LGLA--------PFHFWFPEVLQG-SPLTTGLLLSTVMKFPPITLL-FMTSQSLNPT---LLTTMAILSVALGGWMGLNQ 172
Cdd:PRK12650  214 IAVAaftksaqfPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrFSPVFHDVAVwnwLLIIVGMITALMGAVFAVQK 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 173 TQTRKIMAFSSISHLGWM-AIILVYYPkltllnfymySVMTAAVFLTL-----------------NSTKTLKLSTLMTAW 234
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIvATIGVGTP----------FALTAAVVHTLahalfksslfmligvvdHQAGTRDIRRLGSLW 363

                         250       260
                  ....*....|....*....|....*....
gi 2062562481 235 TKAPSLNTILLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  364 RRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 3.61e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.16  E-value: 3.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQLTH--PTSSLILTAAISMKLGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 111 FHFWFPEVLQGSPLTTGLLLS-TVMK---FPPITLLFMTSQSLNPtlLTTMAILSVALGGWMGLNQTQTRKIMAFSSISH 186
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSgVVVKagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 187 LGWMAIILVYYPKLTLlnfyMYSVMTAAVFL---TLNSTKTLKLSTLMTAWTKAPSLNTILLLTLLSlaglPPLTGFLPK 263
Cdd:PRK07234  281 LGFILAAPLVGGLYAL----AHGLVKSTLFLcagALPSRNFTELISQMLGIGKWIPLTMASFSIAGF----PLLAGFVSK 352


                  ....*...
gi 2062562481 264 WLIIQELT 271
Cdd:PRK07234  353 VLTLKNLL 360
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-195 4.75e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.94  E-value: 4.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  59 YFLVQAAASTLVLFSSMTNAW-STGQWDITQLTHPTSSLILT-----AAISMKLGLAPFHFWFPEVLQGSPLTTGLLLST 132
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2062562481 133 VM-KFPPITLLFMTSQSLNP-----TLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGwmaIILV 195
Cdd:PRK08667  246 VMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG---IILM 311
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-195 5.09e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 38.61  E-value: 5.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481   1 MNPQAKLIFVTSLLL---GTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSS--- 74
Cdd:PRK06591  109 INNNRKSLFYGILLFahtGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIgfl 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  75 MTNAWSTGQWDI-TQLTHPTSSLILTAAIS-------MKLGLAPFHFWFPEVLQGS---------PLTTGLLLSTVMKFP 137
Cdd:PRK06591  189 LSITGSLNMTDIaAYLQEHTNSRIITIAIGffligaiLKTAFFPMHFWMMRAYNNTasvilvylaGISTIIGIYIIYKFT 268

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2062562481 138 PITLLFMTSQSLNPTLLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILV 195
Cdd:PRK06591  269 YIIIGYETIKTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYV 326
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 13-194 5.33e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 38.59  E-value: 5.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQLTHP 92
Cdd:PRK08377  117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQL 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  93 TSSLILTAAI----SMKLGLA------PFHFWFPEVLQGSPL-TTGLLLSTVMK---FPPITLLFMTSQSLNPT----LL 154
Cdd:PRK08377  197 AGTIDPTVAQvglaLLIFGLAveaelfPLNAWAPDAYQAAPHpITVMFSAFVVKaglYAMARILYLMQNANGWSsvlkLV 276

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2062562481 155 TTMAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIIL 194
Cdd:PRK08377  277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALAL 316
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 7.50e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 7.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481  48 HHPRAIEAATKYFLVQAAASTLVLFSSMTNAWSTGQWDITQLTHPTS--------SLILTAAISMKLGLA------PFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghPLFLITLILIFIGAAaksaqgPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 114 WFPEVLQGSPLTTGLLLSTVMKFPPITLLFMTSQSLNPT-----LLTTMAILSVALGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2062562481 189 WMAIILVY----YPKLT-------LLNfymYSVMTAAVFLTL----NSTKTLKLSTLMTAWTKAPSLNTILLLTLLSLAG 253
Cdd:PRK12649  316 YLMTMYGYttyhEPGLGvaaatfhLLN---HATFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAG 392

                         250
                  ....*....|
gi 2062562481 254 LPPLTGFLPK 263
Cdd:PRK12649  393 IPPLNGFLSK 402
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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