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Conserved domains on  [gi|1466369049|gb|RGH27707|]
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nitrous oxide-stimulated promoter family protein [Coprobacillus sp. AF02-13]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YgbA_NO super family cl08119
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 6-106 5.42e-36

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


The actual alignment was detected with superfamily member pfam11756:

Pssm-ID: 447575  Cd Length: 106  Bit Score: 118.08  E-value: 5.42e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1466369049   6 QKRENEKRILKVMIDIYQRKHPQESKM----CEDLYKYAYLRIDKCPFMETKTFCSGCQVHCYQKEYRSQVKKVMRFSGK 81
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGElcaeCQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*
gi 1466369049  82 YMLFYHPLLTIKHGWLSLKERRRKN 106
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLP 105
 
Name Accession Description Interval E-value
YgbA_NO pfam11756
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 6-106 5.42e-36

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


Pssm-ID: 432053  Cd Length: 106  Bit Score: 118.08  E-value: 5.42e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1466369049   6 QKRENEKRILKVMIDIYQRKHPQESKM----CEDLYKYAYLRIDKCPFMETKTFCSGCQVHCYQKEYRSQVKKVMRFSGK 81
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGElcaeCQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*
gi 1466369049  82 YMLFYHPLLTIKHGWLSLKERRRKN 106
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLP 105
PRK10410 PRK10410
nitrous oxide-stimulated promoter family protein;
6-96 9.53e-30

nitrous oxide-stimulated promoter family protein;


Pssm-ID: 236683  Cd Length: 100  Bit Score: 102.33  E-value: 9.53e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1466369049   6 QKRENEKRILKVMIDIYQRKHPQESKM-----CEDLYKYAYLRIDKCPFMETKTFCSGCQVHCYQKEYRSQVKKVMRFSG 80
Cdd:PRK10410    4 KKILREKKTIKKMIRLYCKAKHGGEPQklcpeCEELLEYAQKRLDRCPFGEEKPTCKKCPVHCYKPAKREKMKQVMRFSG 83

                          90
                  ....*....|....*.
gi 1466369049  81 KYMLFYHPLLTIKHGW 96
Cdd:PRK10410   84 PRMLLRHPILAIRHLF 99
 
Name Accession Description Interval E-value
YgbA_NO pfam11756
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 6-106 5.42e-36

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


Pssm-ID: 432053  Cd Length: 106  Bit Score: 118.08  E-value: 5.42e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1466369049   6 QKRENEKRILKVMIDIYQRKHPQESKM----CEDLYKYAYLRIDKCPFMETKTFCSGCQVHCYQKEYRSQVKKVMRFSGK 81
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGElcaeCQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*
gi 1466369049  82 YMLFYHPLLTIKHGWLSLKERRRKN 106
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLP 105
PRK10410 PRK10410
nitrous oxide-stimulated promoter family protein;
6-96 9.53e-30

nitrous oxide-stimulated promoter family protein;


Pssm-ID: 236683  Cd Length: 100  Bit Score: 102.33  E-value: 9.53e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1466369049   6 QKRENEKRILKVMIDIYQRKHPQESKM-----CEDLYKYAYLRIDKCPFMETKTFCSGCQVHCYQKEYRSQVKKVMRFSG 80
Cdd:PRK10410    4 KKILREKKTIKKMIRLYCKAKHGGEPQklcpeCEELLEYAQKRLDRCPFGEEKPTCKKCPVHCYKPAKREKMKQVMRFSG 83

                          90
                  ....*....|....*.
gi 1466369049  81 KYMLFYHPLLTIKHGW 96
Cdd:PRK10410   84 PRMLLRHPILAIRHLF 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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