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Conserved domains on  [gi|1472155042|gb|RHP20442|]
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IS200/IS605 family transposase, partial [Coprobacillus sp. AF35-8]

Protein Classification

transposase( domain architecture ID 671)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Y1_Tnp super family cl00848
Transposase IS200 like; Transposases are needed for efficient transposition of the insertion ...
 6-37 6.35e-12

Transposase IS200 like; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.


The actual alignment was detected with superfamily member NF033573:

Pssm-ID: 469954  Cd Length: 126  Bit Score: 54.44  E-value: 6.35e-12
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1472155042   6 KSNNNVTYSCKYHVVFCPKYRRPVLVDGVDDR 37
Cdd:NF033573    2 RSGSHTVYLLKYHLVWVPKYRRKVLTGEVEER 33
 
Name Accession Description Interval E-value
transpos_IS200 NF033573
IS200/IS605 family transposase; Most IS200/IS605 family insertion sequences encode both this ...
 6-37 6.35e-12

IS200/IS605 family transposase; Most IS200/IS605 family insertion sequences encode both this transposase, TnpA, about 130 amino acids long, and larger accessory protein, TnpB, that may act as a methyltransferase.


Pssm-ID: 468092  Cd Length: 126  Bit Score: 54.44  E-value: 6.35e-12
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1472155042   6 KSNNNVTYSCKYHVVFCPKYRRPVLVDGVDDR 37
Cdd:NF033573    2 RSGSHTVYLLKYHLVWVPKYRRKVLTGEVEER 33
Y1_Tnp pfam01797
Transposase IS200 like; Transposases are needed for efficient transposition of the insertion ...
 13-37 1.17e-08

Transposase IS200 like; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.


Pssm-ID: 460334  Cd Length: 119  Bit Score: 46.01  E-value: 1.17e-08
                          10        20
                  ....*....|....*....|....*
gi 1472155042  13 YSCKYHVVFCPKYRRPVLVDGVDDR 37
Cdd:pfam01797   3 YNLKYHLVWVTKYRRKVLTGEVEER 27
RAYT COG1943
REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];
6-37 6.51e-05

REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];


Pssm-ID: 441546  Cd Length: 138  Bit Score: 36.43  E-value: 6.51e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1472155042   6 KSNNNVTYSCKYHVVFCPKYRRPVLVDGVDDR 37
Cdd:COG1943     3 RSRRLHVPGLTYHITFRTKYRRPVFTDDEDRE 34
 
Name Accession Description Interval E-value
transpos_IS200 NF033573
IS200/IS605 family transposase; Most IS200/IS605 family insertion sequences encode both this ...
 6-37 6.35e-12

IS200/IS605 family transposase; Most IS200/IS605 family insertion sequences encode both this transposase, TnpA, about 130 amino acids long, and larger accessory protein, TnpB, that may act as a methyltransferase.


Pssm-ID: 468092  Cd Length: 126  Bit Score: 54.44  E-value: 6.35e-12
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1472155042   6 KSNNNVTYSCKYHVVFCPKYRRPVLVDGVDDR 37
Cdd:NF033573    2 RSGSHTVYLLKYHLVWVPKYRRKVLTGEVEER 33
Y1_Tnp pfam01797
Transposase IS200 like; Transposases are needed for efficient transposition of the insertion ...
 13-37 1.17e-08

Transposase IS200 like; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.


Pssm-ID: 460334  Cd Length: 119  Bit Score: 46.01  E-value: 1.17e-08
                          10        20
                  ....*....|....*....|....*
gi 1472155042  13 YSCKYHVVFCPKYRRPVLVDGVDDR 37
Cdd:pfam01797   3 YNLKYHLVWVTKYRRKVLTGEVEER 27
RAYT COG1943
REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];
6-37 6.51e-05

REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];


Pssm-ID: 441546  Cd Length: 138  Bit Score: 36.43  E-value: 6.51e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1472155042   6 KSNNNVTYSCKYHVVFCPKYRRPVLVDGVDDR 37
Cdd:COG1943     3 RSRRLHVPGLTYHITFRTKYRRPVFTDDEDRE 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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