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single-stranded-DNA-specific exonuclease RecJ [Clostridioides difficile]
Protein Classification
single-stranded-DNA-specific exonuclease RecJ ( domain architecture ID 11427396 )
single-stranded-DNA-specific exonuclease RecJ is a specific 5'-3' exonuclease that plays an important role in DNA repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
2-544
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 793.15
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 2 KK WILK YKGKIEESEFS K K L NI SP EICQI L K NRGI C T EKDS E I F MN PSL DY L R DPFL M KDM Q KAV D R IKL A V E KN EKI W I 81
Cdd:COG0608 5 RR WILK PPDPELVEALA K E L GL SP LLARL L A NRGI T T PEEA E A F LD PSL KD L H DPFL L KDM D KAV E R LAE A I E NG EKI L I 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 82 YGDYDVDG VS ST SI L CLYFKSI G Y NVDYYIPNR L EEGYG I N ED A IKLISSR G C DLII S VDCGI T S VS EV NT A ND LGIDVI 161
Cdd:COG0608 85 YGDYDVDG AT ST AL L VRFLRAL G A NVDYYIPNR F EEGYG L N PE A VERAAEQ G V DLII T VDCGI S S HE EV AY A KE LGIDVI 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 162 I TDHH ECQS E I P S A F A VI NPK QE DC N YPF DS L C G C GVAFK MI QAL TPK -- E EFKTSMYNY L EI V T L A T IC D I VPL ID ENR 239
Cdd:COG0608 165 V TDHH LPGE E L P P A D A IV NPK RP DC D YPF KE L A G V GVAFK LA QAL RRE lr E RPEPDLAEL L DL V A L G T VA D V VPL TG ENR 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 240 I I VK N GLK SMKEG K NI GLR E L IK V C G VESDK I GSSH IGFA I GPRINA S GRLG YSY LGVEL FT T QSQ EEA V E I A SI L E E K N 319
Cdd:COG0608 245 I L VK Q GLK RLRAT K RP GLR A L LE V A G LDPKE I TAED IGFA L GPRINA A GRLG DAS LGVEL LL T DDE EEA R E L A EE L D E L N 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 320 N ER QM IEA KMYH EA EEMLKSNSRYN D D KVLVL AK E G W QH G I IGIVAS K L T EKY YK PTI L L G I - E N G E A T GSARSI K GF NI 398
Cdd:COG0608 325 R ER KE IEA EITE EA LAQIEELPDLE D P KVLVL YD E D W HP G V IGIVAS R L K EKY HR PTI V L A I d E D G I A K GSARSI P GF DL 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 399 FE AL IK C K DL MT KFGGH EQ AAGL S L DSD N V E ILANEI N KFADYN L T E D D MIENVNVEF EL QENVIN L N L V EEL HK LEPFG 478
Cdd:COG0608 405 YD AL DA C S DL LL KFGGH AM AAGL T L KEE N L E AFRERF N EVVAEQ L A E E D LEPVLEIDG EL PLSELT L E L A EEL EQ LEPFG 484
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1703210172 479 LN NP N P R F IV RN YILKDLKVI GK NQQ HLKL SIEKE - KSYEC I G FN MSH - L KSMYKV G DK VD VLFQ LD E 544
Cdd:COG0608 485 QG NP E P V F LG RN VRVVSQRIV GK DGN HLKL TLRDG g RRLDA I A FN AGD k L EELPNA G KR VD IAYT LD I 552
rpoC2 super family
cl33332 RNA polymerase beta'' subunit; Reviewed
570-781
8.65e-03
RNA polymerase beta'' subunit; Reviewed
CHL00117 :Pssm-ID: 214368 [Multi-domain]
Cd Length: 1364
Bit Score: 39.92
E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 570 N D K L S L KLMSK I IPKDTQSLYN IS ---- V SDFELFDGNT D INIFDYF E KDTLIISNSI NG FY R AMSD I S L I dl DFN I N Y N 645
Cdd:CHL00117 800 K D N L Q L RVVNY I LYGNGKPIRG IS siql V RTCLVLNWDQ D KKSSSIE E ARASFVEVRT NG LI R DFLR I N L V -- KSP I S Y I 877
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 646 iie DDSKNTDKLE L IFSP N -- I D KIDLKRYNN I ILYDYLY N K G EYSYIYENKR E ESEII ---- KYYNKTDLLYL K NVVSN 719
Cdd:CHL00117 878 --- RKRNDPSSSG L LVQS N nf L D STNIYSKAE I QSQSLSQ N Q G TIRTLLNRNK E SQSLL ilss SDCFRIGPFNG K KSKYH 954
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 720 IVPSRDEF I T I ------------------------ YK Q A L IK K EID LD mv N IRE TF N V IP LK FFT I ---------- LNVF 765
Cdd:CHL00117 955 NIKESNPL I P I rnslgplgtvlqianfsssyhllt HN Q I L VT K YLQ LD -- N LKQ TF Q V KV LK YYL I dengkiynpd PCSN 1032
250
....*....|....*.
gi 1703210172 766 RE LN LLDF N LNYEKNS 781
Cdd:CHL00117 1033 II LN PFNL N WYFLHHN 1048
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
2-544
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 793.15
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 2 KK WILK YKGKIEESEFS K K L NI SP EICQI L K NRGI C T EKDS E I F MN PSL DY L R DPFL M KDM Q KAV D R IKL A V E KN EKI W I 81
Cdd:COG0608 5 RR WILK PPDPELVEALA K E L GL SP LLARL L A NRGI T T PEEA E A F LD PSL KD L H DPFL L KDM D KAV E R LAE A I E NG EKI L I 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 82 YGDYDVDG VS ST SI L CLYFKSI G Y NVDYYIPNR L EEGYG I N ED A IKLISSR G C DLII S VDCGI T S VS EV NT A ND LGIDVI 161
Cdd:COG0608 85 YGDYDVDG AT ST AL L VRFLRAL G A NVDYYIPNR F EEGYG L N PE A VERAAEQ G V DLII T VDCGI S S HE EV AY A KE LGIDVI 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 162 I TDHH ECQS E I P S A F A VI NPK QE DC N YPF DS L C G C GVAFK MI QAL TPK -- E EFKTSMYNY L EI V T L A T IC D I VPL ID ENR 239
Cdd:COG0608 165 V TDHH LPGE E L P P A D A IV NPK RP DC D YPF KE L A G V GVAFK LA QAL RRE lr E RPEPDLAEL L DL V A L G T VA D V VPL TG ENR 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 240 I I VK N GLK SMKEG K NI GLR E L IK V C G VESDK I GSSH IGFA I GPRINA S GRLG YSY LGVEL FT T QSQ EEA V E I A SI L E E K N 319
Cdd:COG0608 245 I L VK Q GLK RLRAT K RP GLR A L LE V A G LDPKE I TAED IGFA L GPRINA A GRLG DAS LGVEL LL T DDE EEA R E L A EE L D E L N 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 320 N ER QM IEA KMYH EA EEMLKSNSRYN D D KVLVL AK E G W QH G I IGIVAS K L T EKY YK PTI L L G I - E N G E A T GSARSI K GF NI 398
Cdd:COG0608 325 R ER KE IEA EITE EA LAQIEELPDLE D P KVLVL YD E D W HP G V IGIVAS R L K EKY HR PTI V L A I d E D G I A K GSARSI P GF DL 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 399 FE AL IK C K DL MT KFGGH EQ AAGL S L DSD N V E ILANEI N KFADYN L T E D D MIENVNVEF EL QENVIN L N L V EEL HK LEPFG 478
Cdd:COG0608 405 YD AL DA C S DL LL KFGGH AM AAGL T L KEE N L E AFRERF N EVVAEQ L A E E D LEPVLEIDG EL PLSELT L E L A EEL EQ LEPFG 484
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1703210172 479 LN NP N P R F IV RN YILKDLKVI GK NQQ HLKL SIEKE - KSYEC I G FN MSH - L KSMYKV G DK VD VLFQ LD E 544
Cdd:COG0608 485 QG NP E P V F LG RN VRVVSQRIV GK DGN HLKL TLRDG g RRLDA I A FN AGD k L EELPNA G KR VD IAYT LD I 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
23-560
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 563.47
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 23 IS P EIC QIL KN RGI CTEKDS E I F M NP S L DY L RD PFL MK DM Q KAV D R IKL AVE K NEKI W IYGDYDVDG VS ST S IL CLYFKS 102
Cdd:TIGR00644 1 LG P ILA QIL AS RGI TDAEEL E N F L NP K L KD L PP PFL LL DM E KAV E R LIE AVE N NEKI L IYGDYDVDG IT ST A IL VEFLEL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 103 I G YN VDYYIPNR LE EGYG I N ED A IKLISSR G CD LII S VD C GIT SVS E VNT A ND LG I DVI I TDHH ECQSEI P S A F A VI NP K 182
Cdd:TIGR00644 81 L G VK VDYYIPNR FT EGYG P N PE A FRKLHED G VS LII T VD N GIT AHE E IKY A KE LG L DVI V TDHH LVPEDL P E A A A IV NP N 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 183 QE DCNYP FDS L C G C GVAFK MI QAL tp K EE FKTSMYN --- Y L EI V T L A TI C D I VPL ID ENR II VK N GLK SMKEG K NI GL RE 259
Cdd:TIGR00644 161 RP DCNYP QKE L A G V GVAFK LV QAL -- Y EE LRKPKPD lee F L DL V A L G TI A D V VPL TG ENR AL VK K GLK VLRKQ K RP GL KA 238
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 260 L IK V C GV ES DK IG S SH IGF A IGPRINA S GRLG YSY LGVEL FT T QSQE EA V E I A SI L EEK N N ER QM IE AKMYH EA EEMLKS 339
Cdd:TIGR00644 239 L LE V A GV DK DK LS S TD IGF I IGPRINA A GRLG DAS LGVEL LL T DDPK EA R E L A EE L DSL N Q ER KD IE QTVLE EA LAIAEA 318
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 340 NS ry ND D K V L V L AKE G W QH G II GIVAS K L T E K Y Y KP TILLG I -- EN G E A T GS A RSI K G FNIFE AL IKCKD - L MT KFGGH E 416
Cdd:TIGR00644 319 EE -- TN D S V I V V AKE N W HE G VL GIVAS R L A E E Y N KP VLVFA I de GK G I A K GS G RSI S G IDLYD AL SEARE s L FL KFGGH A 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 417 Q AAGLSL DSD N V E ILANEI N KFADYN L TE D DMIENVN V EF EL QENV I NLN L VEE L HK LEPFG LN NP N P R F IVRNYILK D L 496
Cdd:TIGR00644 397 M AAGLSL KRE N L E EFREKL N ELFSKS L EK D ESEPILE V DG EL PPSD I DFE L IRQ L ES LEPFG QG NP E P L F VLKDLRVE D I 476
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1703210172 497 K VI G K N qq HLKLS I - EK EK SY E C I G FN MSHLKSMYKV G DKV DV LFQ L DE N NYM GN RKV Q FLL KDI 560
Cdd:TIGR00644 477 K LL G G N -- HLKLS L k SG EK NI E A I A FN AGEQLLELNG G EPI DV AGK L KI N EWN GN KTP Q LII KDI 539
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
23-560
7.64e-95
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 308.16
E-value: 7.64e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 23 IS P EICQILKN RG ICTEKDS E IFMNPS L DYLR dpfl MKDMQ KAV DRIKL A VEKNEK I WIY GD Y D V DG VS ST SILC L YFK S 102
Cdd:PRK11070 20 LP P LLRRLYAS RG VRSAQEL E RSVKGL L PWQQ ---- LSGIE KAV ELLYN A LREGTR I IVV GD F D A DG AT ST ALSV L ALR S 95
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 103 I G Y - NVDY YI PNR L E E GYG INEDAIKLISS RG CD LI IS VD C GI T S VSE V NT A ND LGI D V II TDHH ECQSEI P S A F A V INP 181
Cdd:PRK11070 96 L G C s NVDY LV PNR F E D GYG LSPEVVDQAHA RG AQ LI VT VD N GI S S HAG V AH A HA LGI P V LV TDHH LPGETL P A A D A I INP 175
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 182 KQE DCN Y P FD SL C G C GVAF KMIQ AL TPK ------- E E FKTSMY N --- Y L EI V T L A T IC D I VPL IDE NRI I V KN GL KSMKE 251
Cdd:PRK11070 176 NLR DCN F P SK SL A G V GVAF YLML AL RAF lrdqgwf D E RGIAIP N lae L L DL V A L G T VA D V VPL DAN NRI L V WQ GL SRIRA 255
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 252 GK - NI G LRE L IK V CGVESD K IGS S HI GFA I GPR I NA S GRL GYSYL GV E L FTTQSQE EA VEI A SI L EEK N NE R QM IE AK M Y 330
Cdd:PRK11070 256 GK c RP G IKA L LE V ANRDAQ K LAA S DL GFA L GPR L NA A GRL DDMSV GV A L LLCDNIG EA RVL A NE L DAL N QT R KE IE QG M Q 335
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 331 H EA EEMLKSNS R YN D DKV -- L VLAKEG W QH G II GI V AS KLT E KYYK P T I LLG i EN G EA T -- GS A RSI K G FNIFE AL IKCK 406
Cdd:PRK11070 336 V EA LTLCEKLE R SS D TLP yg L AMYHPE W HQ G VV GI L AS RIK E RFHR P V I AFA - PA G DG T lk GS G RSI Q G LHMRD AL ERLD 414
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 407 ---- D L MT KFGGH EQ AAGLSL DS D NV E ILANEINKFADYN L TEDDMIEN V NVEF EL QENVIN L NLV E E L HKLE P F G LNN P 482
Cdd:PRK11070 415 tlyp G L IL KFGGH AM AAGLSL EE D KF E LFQQRFGELVTEW L DPSLLQGV V WSDG EL SPAEMS L EVA E L L RDAG P W G QMF P 494
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 483 N P R F IV R NYI L KD l KVI G kn QQ HLK LSI E --- KEKSYEC I G FN MSHLKSMYKVGDK V DVLFQ LD E N NYM GNR KV Q FLLKD 559
Cdd:PRK11070 495 E P L F DG R FRL L QQ - RLV G -- ER HLK VMV E pvg GGPLLDG I A FN VDTTLWPDNSVRE V ELAYK LD I N EFR GNR SL Q LIIDH 571
.
gi 1703210172 560 I 560
Cdd:PRK11070 572 I 572
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
78-227
3.53e-44
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 156.19
E-value: 3.53e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 78 KI W IYG D Y -- D V DG VS S TSI L CL Y F K SIGY - N V D YYIP N RLEEGYGIN ED AI KLISSRG c D L I I S VDCGI T SV SEVNT A N 154
Cdd:pfam01368 1 KI V IYG H Y np D G DG IG S ALG L YR Y L K ELVG p D V E YYIP D RLEEGYGIN PE AI EELIDFD - T L L I T VDCGI K SV EGIEL A K 79
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1703210172 155 D LGIDVI IT DHH ECQSEI P S A F A V INP KQEDCN ypfdsl CGCG V A FK MI Q a LTPK EE F K TSMYNYLEIVT L AT 227
Cdd:pfam01368 80 E LGIDVI VI DHH LPNDFL P D A D A I INP REPPAS ------ STSE V V FK LL Q - YAYG EE G K EIDKELADLLL L GI 145
rpoC2
CHL00117 RNA polymerase beta'' subunit; Reviewed
570-781
8.65e-03
RNA polymerase beta'' subunit; Reviewed
Pssm-ID: 214368 [Multi-domain]
Cd Length: 1364
Bit Score: 39.92
E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 570 N D K L S L KLMSK I IPKDTQSLYN IS ---- V SDFELFDGNT D INIFDYF E KDTLIISNSI NG FY R AMSD I S L I dl DFN I N Y N 645
Cdd:CHL00117 800 K D N L Q L RVVNY I LYGNGKPIRG IS siql V RTCLVLNWDQ D KKSSSIE E ARASFVEVRT NG LI R DFLR I N L V -- KSP I S Y I 877
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 646 iie DDSKNTDKLE L IFSP N -- I D KIDLKRYNN I ILYDYLY N K G EYSYIYENKR E ESEII ---- KYYNKTDLLYL K NVVSN 719
Cdd:CHL00117 878 --- RKRNDPSSSG L LVQS N nf L D STNIYSKAE I QSQSLSQ N Q G TIRTLLNRNK E SQSLL ilss SDCFRIGPFNG K KSKYH 954
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 720 IVPSRDEF I T I ------------------------ YK Q A L IK K EID LD mv N IRE TF N V IP LK FFT I ---------- LNVF 765
Cdd:CHL00117 955 NIKESNPL I P I rnslgplgtvlqianfsssyhllt HN Q I L VT K YLQ LD -- N LKQ TF Q V KV LK YYL I dengkiynpd PCSN 1032
250
....*....|....*.
gi 1703210172 766 RE LN LLDF N LNYEKNS 781
Cdd:CHL00117 1033 II LN PFNL N WYFLHHN 1048
Name
Accession
Description
Interval
E-value
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
2-544
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 793.15
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 2 KK WILK YKGKIEESEFS K K L NI SP EICQI L K NRGI C T EKDS E I F MN PSL DY L R DPFL M KDM Q KAV D R IKL A V E KN EKI W I 81
Cdd:COG0608 5 RR WILK PPDPELVEALA K E L GL SP LLARL L A NRGI T T PEEA E A F LD PSL KD L H DPFL L KDM D KAV E R LAE A I E NG EKI L I 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 82 YGDYDVDG VS ST SI L CLYFKSI G Y NVDYYIPNR L EEGYG I N ED A IKLISSR G C DLII S VDCGI T S VS EV NT A ND LGIDVI 161
Cdd:COG0608 85 YGDYDVDG AT ST AL L VRFLRAL G A NVDYYIPNR F EEGYG L N PE A VERAAEQ G V DLII T VDCGI S S HE EV AY A KE LGIDVI 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 162 I TDHH ECQS E I P S A F A VI NPK QE DC N YPF DS L C G C GVAFK MI QAL TPK -- E EFKTSMYNY L EI V T L A T IC D I VPL ID ENR 239
Cdd:COG0608 165 V TDHH LPGE E L P P A D A IV NPK RP DC D YPF KE L A G V GVAFK LA QAL RRE lr E RPEPDLAEL L DL V A L G T VA D V VPL TG ENR 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 240 I I VK N GLK SMKEG K NI GLR E L IK V C G VESDK I GSSH IGFA I GPRINA S GRLG YSY LGVEL FT T QSQ EEA V E I A SI L E E K N 319
Cdd:COG0608 245 I L VK Q GLK RLRAT K RP GLR A L LE V A G LDPKE I TAED IGFA L GPRINA A GRLG DAS LGVEL LL T DDE EEA R E L A EE L D E L N 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 320 N ER QM IEA KMYH EA EEMLKSNSRYN D D KVLVL AK E G W QH G I IGIVAS K L T EKY YK PTI L L G I - E N G E A T GSARSI K GF NI 398
Cdd:COG0608 325 R ER KE IEA EITE EA LAQIEELPDLE D P KVLVL YD E D W HP G V IGIVAS R L K EKY HR PTI V L A I d E D G I A K GSARSI P GF DL 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 399 FE AL IK C K DL MT KFGGH EQ AAGL S L DSD N V E ILANEI N KFADYN L T E D D MIENVNVEF EL QENVIN L N L V EEL HK LEPFG 478
Cdd:COG0608 405 YD AL DA C S DL LL KFGGH AM AAGL T L KEE N L E AFRERF N EVVAEQ L A E E D LEPVLEIDG EL PLSELT L E L A EEL EQ LEPFG 484
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1703210172 479 LN NP N P R F IV RN YILKDLKVI GK NQQ HLKL SIEKE - KSYEC I G FN MSH - L KSMYKV G DK VD VLFQ LD E 544
Cdd:COG0608 485 QG NP E P V F LG RN VRVVSQRIV GK DGN HLKL TLRDG g RRLDA I A FN AGD k L EELPNA G KR VD IAYT LD I 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
23-560
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 563.47
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 23 IS P EIC QIL KN RGI CTEKDS E I F M NP S L DY L RD PFL MK DM Q KAV D R IKL AVE K NEKI W IYGDYDVDG VS ST S IL CLYFKS 102
Cdd:TIGR00644 1 LG P ILA QIL AS RGI TDAEEL E N F L NP K L KD L PP PFL LL DM E KAV E R LIE AVE N NEKI L IYGDYDVDG IT ST A IL VEFLEL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 103 I G YN VDYYIPNR LE EGYG I N ED A IKLISSR G CD LII S VD C GIT SVS E VNT A ND LG I DVI I TDHH ECQSEI P S A F A VI NP K 182
Cdd:TIGR00644 81 L G VK VDYYIPNR FT EGYG P N PE A FRKLHED G VS LII T VD N GIT AHE E IKY A KE LG L DVI V TDHH LVPEDL P E A A A IV NP N 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 183 QE DCNYP FDS L C G C GVAFK MI QAL tp K EE FKTSMYN --- Y L EI V T L A TI C D I VPL ID ENR II VK N GLK SMKEG K NI GL RE 259
Cdd:TIGR00644 161 RP DCNYP QKE L A G V GVAFK LV QAL -- Y EE LRKPKPD lee F L DL V A L G TI A D V VPL TG ENR AL VK K GLK VLRKQ K RP GL KA 238
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 260 L IK V C GV ES DK IG S SH IGF A IGPRINA S GRLG YSY LGVEL FT T QSQE EA V E I A SI L EEK N N ER QM IE AKMYH EA EEMLKS 339
Cdd:TIGR00644 239 L LE V A GV DK DK LS S TD IGF I IGPRINA A GRLG DAS LGVEL LL T DDPK EA R E L A EE L DSL N Q ER KD IE QTVLE EA LAIAEA 318
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 340 NS ry ND D K V L V L AKE G W QH G II GIVAS K L T E K Y Y KP TILLG I -- EN G E A T GS A RSI K G FNIFE AL IKCKD - L MT KFGGH E 416
Cdd:TIGR00644 319 EE -- TN D S V I V V AKE N W HE G VL GIVAS R L A E E Y N KP VLVFA I de GK G I A K GS G RSI S G IDLYD AL SEARE s L FL KFGGH A 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 417 Q AAGLSL DSD N V E ILANEI N KFADYN L TE D DMIENVN V EF EL QENV I NLN L VEE L HK LEPFG LN NP N P R F IVRNYILK D L 496
Cdd:TIGR00644 397 M AAGLSL KRE N L E EFREKL N ELFSKS L EK D ESEPILE V DG EL PPSD I DFE L IRQ L ES LEPFG QG NP E P L F VLKDLRVE D I 476
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1703210172 497 K VI G K N qq HLKLS I - EK EK SY E C I G FN MSHLKSMYKV G DKV DV LFQ L DE N NYM GN RKV Q FLL KDI 560
Cdd:TIGR00644 477 K LL G G N -- HLKLS L k SG EK NI E A I A FN AGEQLLELNG G EPI DV AGK L KI N EWN GN KTP Q LII KDI 539
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
23-560
7.64e-95
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 308.16
E-value: 7.64e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 23 IS P EICQILKN RG ICTEKDS E IFMNPS L DYLR dpfl MKDMQ KAV DRIKL A VEKNEK I WIY GD Y D V DG VS ST SILC L YFK S 102
Cdd:PRK11070 20 LP P LLRRLYAS RG VRSAQEL E RSVKGL L PWQQ ---- LSGIE KAV ELLYN A LREGTR I IVV GD F D A DG AT ST ALSV L ALR S 95
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 103 I G Y - NVDY YI PNR L E E GYG INEDAIKLISS RG CD LI IS VD C GI T S VSE V NT A ND LGI D V II TDHH ECQSEI P S A F A V INP 181
Cdd:PRK11070 96 L G C s NVDY LV PNR F E D GYG LSPEVVDQAHA RG AQ LI VT VD N GI S S HAG V AH A HA LGI P V LV TDHH LPGETL P A A D A I INP 175
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 182 KQE DCN Y P FD SL C G C GVAF KMIQ AL TPK ------- E E FKTSMY N --- Y L EI V T L A T IC D I VPL IDE NRI I V KN GL KSMKE 251
Cdd:PRK11070 176 NLR DCN F P SK SL A G V GVAF YLML AL RAF lrdqgwf D E RGIAIP N lae L L DL V A L G T VA D V VPL DAN NRI L V WQ GL SRIRA 255
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 252 GK - NI G LRE L IK V CGVESD K IGS S HI GFA I GPR I NA S GRL GYSYL GV E L FTTQSQE EA VEI A SI L EEK N NE R QM IE AK M Y 330
Cdd:PRK11070 256 GK c RP G IKA L LE V ANRDAQ K LAA S DL GFA L GPR L NA A GRL DDMSV GV A L LLCDNIG EA RVL A NE L DAL N QT R KE IE QG M Q 335
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 331 H EA EEMLKSNS R YN D DKV -- L VLAKEG W QH G II GI V AS KLT E KYYK P T I LLG i EN G EA T -- GS A RSI K G FNIFE AL IKCK 406
Cdd:PRK11070 336 V EA LTLCEKLE R SS D TLP yg L AMYHPE W HQ G VV GI L AS RIK E RFHR P V I AFA - PA G DG T lk GS G RSI Q G LHMRD AL ERLD 414
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 407 ---- D L MT KFGGH EQ AAGLSL DS D NV E ILANEINKFADYN L TEDDMIEN V NVEF EL QENVIN L NLV E E L HKLE P F G LNN P 482
Cdd:PRK11070 415 tlyp G L IL KFGGH AM AAGLSL EE D KF E LFQQRFGELVTEW L DPSLLQGV V WSDG EL SPAEMS L EVA E L L RDAG P W G QMF P 494
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 483 N P R F IV R NYI L KD l KVI G kn QQ HLK LSI E --- KEKSYEC I G FN MSHLKSMYKVGDK V DVLFQ LD E N NYM GNR KV Q FLLKD 559
Cdd:PRK11070 495 E P L F DG R FRL L QQ - RLV G -- ER HLK VMV E pvg GGPLLDG I A FN VDTTLWPDNSVRE V ELAYK LD I N EFR GNR SL Q LIIDH 571
.
gi 1703210172 560 I 560
Cdd:PRK11070 572 I 572
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
78-227
3.53e-44
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 156.19
E-value: 3.53e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 78 KI W IYG D Y -- D V DG VS S TSI L CL Y F K SIGY - N V D YYIP N RLEEGYGIN ED AI KLISSRG c D L I I S VDCGI T SV SEVNT A N 154
Cdd:pfam01368 1 KI V IYG H Y np D G DG IG S ALG L YR Y L K ELVG p D V E YYIP D RLEEGYGIN PE AI EELIDFD - T L L I T VDCGI K SV EGIEL A K 79
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1703210172 155 D LGIDVI IT DHH ECQSEI P S A F A V INP KQEDCN ypfdsl CGCG V A FK MI Q a LTPK EE F K TSMYNYLEIVT L AT 227
Cdd:pfam01368 80 E LGIDVI VI DHH LPNDFL P D A D A I INP REPPAS ------ STSE V V FK LL Q - YAYG EE G K EIDKELADLLL L GI 145
RecJ_OB
pfam17768 RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
454-559
1.88e-33
RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
Pssm-ID: 465495 [Multi-domain]
Cd Length: 107
Bit Score: 124.14
E-value: 1.88e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 454 VEF EL QENV I N L N L V EEL HK LEPFG LN NP N P R F IV RN YILK D LKV IGK NQQ HLKL SIEKE - K S YEC I G FNM SH L KSMYKV 532
Cdd:pfam17768 1 IDA EL PLSD I T L E L I EEL ER LEPFG QG NP E P V F AL RN VRVL D VRI IGK DGN HLKL TLRDG g R S LDA I A FNM GE L LPELAS 80
90 100
....*....|....*....|....*..
gi 1703210172 533 GDKVD VLFQ L DE N NYM G N R KV Q FLL KD 559
Cdd:pfam17768 81 GDKVD IAYT L EI N EWN G R R SL Q LRI KD 107
DHHA1
pfam02272 DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called ...
315-439
2.21e-16
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Pssm-ID: 396724 [Multi-domain]
Cd Length: 139
Bit Score: 76.71
E-value: 2.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 315 LE EK N N E RQMI E AKM -------- YHE A E E M L KSNSRY N DD KVLV - LAK EGW QH G II GI V A SK L TE K YYK P T I L L GIENGE 385
Cdd:pfam02272 1 LE SL N E E LKEL E KEL eelkeala LLK A K E L L EKAEEI N GV KVLV a EVG EGW DA G AL GI A A DR L KK K LGD P V I V L VAKEDG 80
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1703210172 386 AT -- G SARS I K -- G FNIF E A L IK - CKD L MTKF GGH EQ AAG LSL D SDNVEILANEINKFA 439
Cdd:pfam02272 81 DK vk V SARS S K dk G VDAG E L L KE v AAI L GGGG GGH DL AAG AGI D AEKLDEALELLEEAI 139
rpoC2
CHL00117 RNA polymerase beta'' subunit; Reviewed
570-781
8.65e-03
RNA polymerase beta'' subunit; Reviewed
Pssm-ID: 214368 [Multi-domain]
Cd Length: 1364
Bit Score: 39.92
E-value: 8.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 570 N D K L S L KLMSK I IPKDTQSLYN IS ---- V SDFELFDGNT D INIFDYF E KDTLIISNSI NG FY R AMSD I S L I dl DFN I N Y N 645
Cdd:CHL00117 800 K D N L Q L RVVNY I LYGNGKPIRG IS siql V RTCLVLNWDQ D KKSSSIE E ARASFVEVRT NG LI R DFLR I N L V -- KSP I S Y I 877
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 646 iie DDSKNTDKLE L IFSP N -- I D KIDLKRYNN I ILYDYLY N K G EYSYIYENKR E ESEII ---- KYYNKTDLLYL K NVVSN 719
Cdd:CHL00117 878 --- RKRNDPSSSG L LVQS N nf L D STNIYSKAE I QSQSLSQ N Q G TIRTLLNRNK E SQSLL ilss SDCFRIGPFNG K KSKYH 954
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703210172 720 IVPSRDEF I T I ------------------------ YK Q A L IK K EID LD mv N IRE TF N V IP LK FFT I ---------- LNVF 765
Cdd:CHL00117 955 NIKESNPL I P I rnslgplgtvlqianfsssyhllt HN Q I L VT K YLQ LD -- N LKQ TF Q V KV LK YYL I dengkiynpd PCSN 1032
250
....*....|....*.
gi 1703210172 766 RE LN LLDF N LNYEKNS 781
Cdd:CHL00117 1033 II LN PFNL N WYFLHHN 1048
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
