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Conserved domains on  [gi|2484646027|gb|WFV51668|]
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DUF1778 domain-containing protein [Escherichia coli]

Protein Classification

DUF1778 domain-containing protein( domain architecture ID 10008563)

DUF1778 domain-containing protein similar to Klebsiella pneumoniae protein KacA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4453 COG4453
Uncharacterized conserved protein, DUF1778 family [Function unknown];
14-96 1.51e-18

Uncharacterized conserved protein, DUF1778 family [Function unknown];


:

Pssm-ID: 443551  Cd Length: 89  Bit Score: 73.26  E-value: 1.51e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2484646027  14 TLKNARVELKTSPDAKNKLREAAQAVGVDLSAFILSAAMERAESVLDNQRRRELSNQSWELMNQLIAEPAQPTLALKALM 93
Cdd:COG4453     3 ATKTARINLRISPEQKALIDRAAALSGKTLTDFVLEAALEAAEEVLLDQRLIRLSEEDFEAFLAALDNPPAPNPRLKRAL 82


                  ...
gi 2484646027  94 KRK 96
Cdd:COG4453    83 KRY 85
 
Name Accession Description Interval E-value
COG4453 COG4453
Uncharacterized conserved protein, DUF1778 family [Function unknown];
14-96 1.51e-18

Uncharacterized conserved protein, DUF1778 family [Function unknown];


Pssm-ID: 443551  Cd Length: 89  Bit Score: 73.26  E-value: 1.51e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2484646027  14 TLKNARVELKTSPDAKNKLREAAQAVGVDLSAFILSAAMERAESVLDNQRRRELSNQSWELMNQLIAEPAQPTLALKALM 93
Cdd:COG4453     3 ATKTARINLRISPEQKALIDRAAALSGKTLTDFVLEAALEAAEEVLLDQRLIRLSEEDFEAFLAALDNPPAPNPRLKRAL 82


                  ...
gi 2484646027  94 KRK 96
Cdd:COG4453    83 KRY 85
DUF1778 pfam08681
Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The ...
 21-94 2.81e-13

Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.


Pssm-ID: 462557  Cd Length: 75  Bit Score: 59.55  E-value: 2.81e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2484646027  21 ELKTSPDAKNKLREAAQAVGVDLSAFILSAAMERAESVLDNQRRRELSNQSWELMNQLIAEPAQPTLALKALMK 94
Cdd:pfam08681   2 ELRISPEAKELLDRAAALSGKTLTDFVLEAALEAAEKVIEDHERIRLSEEDFQAFVAALDNPPKPNPRLLKAAR 75
 
Name Accession Description Interval E-value
COG4453 COG4453
Uncharacterized conserved protein, DUF1778 family [Function unknown];
14-96 1.51e-18

Uncharacterized conserved protein, DUF1778 family [Function unknown];


Pssm-ID: 443551  Cd Length: 89  Bit Score: 73.26  E-value: 1.51e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2484646027  14 TLKNARVELKTSPDAKNKLREAAQAVGVDLSAFILSAAMERAESVLDNQRRRELSNQSWELMNQLIAEPAQPTLALKALM 93
Cdd:COG4453     3 ATKTARINLRISPEQKALIDRAAALSGKTLTDFVLEAALEAAEEVLLDQRLIRLSEEDFEAFLAALDNPPAPNPRLKRAL 82


                  ...
gi 2484646027  94 KRK 96
Cdd:COG4453    83 KRY 85
DUF1778 pfam08681
Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The ...
 21-94 2.81e-13

Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.


Pssm-ID: 462557  Cd Length: 75  Bit Score: 59.55  E-value: 2.81e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2484646027  21 ELKTSPDAKNKLREAAQAVGVDLSAFILSAAMERAESVLDNQRRRELSNQSWELMNQLIAEPAQPTLALKALMK 94
Cdd:pfam08681   2 ELRISPEAKELLDRAAALSGKTLTDFVLEAALEAAEKVIEDHERIRLSEEDFQAFVAALDNPPKPNPRLLKAAR 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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