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Conserved domains on  [gi|446356451|ref|WP_000434306|]
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MULTISPECIES: YnhF family membrane protein [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
small_mem_YnhF NF033411
YnhF family membrane protein; Members of this protein family, are small membrane proteins, ...
 1-29 4.53e-03

YnhF family membrane protein; Members of this protein family, are small membrane proteins, about 29 amino acids in length. YnhF from E. coli was shown to have an intact fMet residue at the N-terminus and to be chloroform-soluble. The previously generated narrow cluster PRK14756 includes some members of this family.


:

Pssm-ID: 380254  Cd Length: 29  Bit Score: 29.37  E-value: 4.53e-03
                        10        20
                ....*....|....*....|....*....
gi 446356451  1 MEQDLKFALAIVAITFTVLIGFGVIAITH 29
Cdd:NF033411  1 MDTDLKFALLTTVGALAVILGFGLTAILH 29
 
Name Accession Description Interval E-value
small_mem_YnhF NF033411
YnhF family membrane protein; Members of this protein family, are small membrane proteins, ...
 1-29 4.53e-03

YnhF family membrane protein; Members of this protein family, are small membrane proteins, about 29 amino acids in length. YnhF from E. coli was shown to have an intact fMet residue at the N-terminus and to be chloroform-soluble. The previously generated narrow cluster PRK14756 includes some members of this family.


Pssm-ID: 380254  Cd Length: 29  Bit Score: 29.37  E-value: 4.53e-03
                        10        20
                ....*....|....*....|....*....
gi 446356451  1 MEQDLKFALAIVAITFTVLIGFGVIAITH 29
Cdd:NF033411  1 MDTDLKFALLTTVGALAVILGFGLTAILH 29
small_mem_YnhF PRK14756
YnhF family membrane protein; Validated;
1-29 4.53e-03

YnhF family membrane protein; Validated;


Pssm-ID: 341227  Cd Length: 29  Bit Score: 29.37  E-value: 4.53e-03
                        10        20
                ....*....|....*....|....*....
gi 446356451  1 MEQDLKFALAIVAITFTVLIGFGVIAITH 29
Cdd:PRK14756  1 MDTDLKFALLTTVGALAVILGFGLTAILH 29
 
Name Accession Description Interval E-value
small_mem_YnhF NF033411
YnhF family membrane protein; Members of this protein family, are small membrane proteins, ...
 1-29 4.53e-03

YnhF family membrane protein; Members of this protein family, are small membrane proteins, about 29 amino acids in length. YnhF from E. coli was shown to have an intact fMet residue at the N-terminus and to be chloroform-soluble. The previously generated narrow cluster PRK14756 includes some members of this family.


Pssm-ID: 380254  Cd Length: 29  Bit Score: 29.37  E-value: 4.53e-03
                        10        20
                ....*....|....*....|....*....
gi 446356451  1 MEQDLKFALAIVAITFTVLIGFGVIAITH 29
Cdd:NF033411  1 MDTDLKFALLTTVGALAVILGFGLTAILH 29
small_mem_YnhF PRK14756
YnhF family membrane protein; Validated;
1-29 4.53e-03

YnhF family membrane protein; Validated;


Pssm-ID: 341227  Cd Length: 29  Bit Score: 29.37  E-value: 4.53e-03
                        10        20
                ....*....|....*....|....*....
gi 446356451  1 MEQDLKFALAIVAITFTVLIGFGVIAITH 29
Cdd:PRK14756  1 MDTDLKFALLTTVGALAVILGFGLTAILH 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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