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Conserved domains on  [gi|446431672|ref|WP_000509527|]
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MULTISPECIES: hypothetical protein [Salmonella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4012 super family cl16153
Protein of unknown function (DUF4012); This is a family of uncharacterized proteins found in ...
 12-57 7.93e-03

Protein of unknown function (DUF4012); This is a family of uncharacterized proteins found in archaea and bacteria.


The actual alignment was detected with superfamily member pfam13196:

Pssm-ID: 433030  Cd Length: 144  Bit Score: 33.73  E-value: 7.93e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 446431672   12 VTVNmagGGKIVIGDFGDNT--APKAEPLPPLTPEE-ELYGRGLCLLPA 57
Cdd:pfam13196  29 LTAD---DGKITIGDQGSNAdlNGFPTPVLPLHPEEaALYGPAPGRYLR 74
 
Name Accession Description Interval E-value
DUF4012 pfam13196
Protein of unknown function (DUF4012); This is a family of uncharacterized proteins found in ...
 12-57 7.93e-03

Protein of unknown function (DUF4012); This is a family of uncharacterized proteins found in archaea and bacteria.


Pssm-ID: 433030  Cd Length: 144  Bit Score: 33.73  E-value: 7.93e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 446431672   12 VTVNmagGGKIVIGDFGDNT--APKAEPLPPLTPEE-ELYGRGLCLLPA 57
Cdd:pfam13196  29 LTAD---DGKITIGDQGSNAdlNGFPTPVLPLHPEEaALYGPAPGRYLR 74
 
Name Accession Description Interval E-value
DUF4012 pfam13196
Protein of unknown function (DUF4012); This is a family of uncharacterized proteins found in ...
 12-57 7.93e-03

Protein of unknown function (DUF4012); This is a family of uncharacterized proteins found in archaea and bacteria.


Pssm-ID: 433030  Cd Length: 144  Bit Score: 33.73  E-value: 7.93e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 446431672   12 VTVNmagGGKIVIGDFGDNT--APKAEPLPPLTPEE-ELYGRGLCLLPA 57
Cdd:pfam13196  29 LTAD---DGKITIGDQGSNAdlNGFPTPVLPLHPEEaALYGPAPGRYLR 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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