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Conserved domains on  [gi|446509308|ref|WP_000586836|]
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MULTISPECIES: biofilm peroxide resistance protein BsmA [Salmonella]

Protein Classification

bioflm peroxide resistance protein BsmA( domain architecture ID 10014920)

bioflm peroxide resistance protein BsmA (also known as YjfO) is involved in protection of biofilms against oxidative stress

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14864 PRK14864
biofilm peroxide resistance protein BsmA;
6-109 5.22e-64

biofilm peroxide resistance protein BsmA;


:

Pssm-ID: 184866  Cd Length: 104  Bit Score: 189.10  E-value: 5.22e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446509308   6 RDRVMRRFASLIAALLLSACSVLQGTPQPAPPVADHPQEIRRDQTQGLQRMGTVSALVRGSPDDAIDEIRAKAVAAKADY 85
Cdd:PRK14864   1 RNMVMRRFASLLLTLLLSACSALQGTPQPAPPPADHAQEIRRAQTQGLQKMGTVSALVRGSPDDAEREIQAKANAAGADY 80

                         90       100
                 ....*....|....*....|....
gi 446509308  86 YVILMVDETVVTGQWYSQAILYRQ 109
Cdd:PRK14864  81 YVIVMVDETVVPGQWYSQAILYRK 104
 
Name Accession Description Interval E-value
PRK14864 PRK14864
biofilm peroxide resistance protein BsmA;
6-109 5.22e-64

biofilm peroxide resistance protein BsmA;


Pssm-ID: 184866  Cd Length: 104  Bit Score: 189.10  E-value: 5.22e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446509308   6 RDRVMRRFASLIAALLLSACSVLQGTPQPAPPVADHPQEIRRDQTQGLQRMGTVSALVRGSPDDAIDEIRAKAVAAKADY 85
Cdd:PRK14864   1 RNMVMRRFASLLLTLLLSACSALQGTPQPAPPPADHAQEIRRAQTQGLQKMGTVSALVRGSPDDAEREIQAKANAAGADY 80

                         90       100
                 ....*....|....*....|....
gi 446509308  86 YVILMVDETVVTGQWYSQAILYRQ 109
Cdd:PRK14864  81 YVIVMVDETVVPGQWYSQAILYRK 104
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 53-107 1.03e-13

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 60.23  E-value: 1.03e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446509308   53 LQRMGTVSA-LVRGSPDDAIDEIRAKAVAAKADYYVILMVDETvVTGQWYSQAILY 107
Cdd:pfam07338   1 LQPIGTVSVsGVFGSPSDAEAALSKKADAKGAKSYRIISADEP-NGGNWHGTAELY 55
LpoA COG3107
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ...
 1-44 1.13e-03

Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442341 [Multi-domain]  Cd Length: 610  Bit Score: 36.87  E-value: 1.13e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 446509308   1 MIIRKRDRVMRRFASLIAALLLSACSVLQGTPQ-PAPPVADHPQE 44
Cdd:COG3107    3 PILTKRTSVSRLLLLLLLALLLAGCASTSTAPQtPAADLQGEATA 47
 
Name Accession Description Interval E-value
PRK14864 PRK14864
biofilm peroxide resistance protein BsmA;
6-109 5.22e-64

biofilm peroxide resistance protein BsmA;


Pssm-ID: 184866  Cd Length: 104  Bit Score: 189.10  E-value: 5.22e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446509308   6 RDRVMRRFASLIAALLLSACSVLQGTPQPAPPVADHPQEIRRDQTQGLQRMGTVSALVRGSPDDAIDEIRAKAVAAKADY 85
Cdd:PRK14864   1 RNMVMRRFASLLLTLLLSACSALQGTPQPAPPPADHAQEIRRAQTQGLQKMGTVSALVRGSPDDAEREIQAKANAAGADY 80

                         90       100
                 ....*....|....*....|....
gi 446509308  86 YVILMVDETVVTGQWYSQAILYRQ 109
Cdd:PRK14864  81 YVIVMVDETVVPGQWYSQAILYRK 104
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 53-107 1.03e-13

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 60.23  E-value: 1.03e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446509308   53 LQRMGTVSA-LVRGSPDDAIDEIRAKAVAAKADYYVILMVDETvVTGQWYSQAILY 107
Cdd:pfam07338   1 LQPIGTVSVsGVFGSPSDAEAALSKKADAKGAKSYRIISADEP-NGGNWHGTAELY 55
LpoA COG3107
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ...
 1-44 1.13e-03

Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442341 [Multi-domain]  Cd Length: 610  Bit Score: 36.87  E-value: 1.13e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 446509308   1 MIIRKRDRVMRRFASLIAALLLSACSVLQGTPQ-PAPPVADHPQE 44
Cdd:COG3107    3 PILTKRTSVSRLLLLLLLALLLAGCASTSTAPQtPAADLQGEATA 47
LolB COG3017
Outer membrane lipoprotein LolB, involved in outer membrane biogenesis [Cell wall/membrane ...
 8-55 5.86e-03

Outer membrane lipoprotein LolB, involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442254  Cd Length: 200  Bit Score: 34.50  E-value: 5.86e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446509308   8 RVMRRFAS-LIAALLLSACSVLQGTPQPAPPVADHPQeiRRDQTQGLQR 55
Cdd:COG3017    2 SKLRRLLLlLLLLLLLAGCATLPPRPTTSPTSPAWQA--HQQQLQQLQQ 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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