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Conserved domains on  [gi|446659567|ref|WP_000736913|]
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MULTISPECIES: recombination protein NinB [Enterobacteriaceae]

Protein Classification

recombination protein NinB( domain architecture ID 10530491)

recombination protein NinB is a phage recombinase that participates in the early stages of recombination by supplying a function equivalent to the Escherichia coli RecFOR complex

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NinB pfam05772
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 5-121 1.22e-60

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


:

Pssm-ID: 428623  Cd Length: 117  Bit Score: 182.57  E-value: 1.22e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446659567    5 TFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQ-Q 83
Cdd:pfam05772   1 TFFLRSPAIKQNAIHAIAQLPVDQDKPLVVEIRPRTRSLDQNAKLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQaQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 446659567   84 DVVPNLAGnGFVVIGQSTSRMRVSEFAELLELIQAFGT 121
Cdd:pfam05772  81 KVVPGLDG-GFVVLGQSTSKMSVKEMAELIELITAFGA 117
 
Name Accession Description Interval E-value
NinB pfam05772
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 5-121 1.22e-60

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


Pssm-ID: 428623  Cd Length: 117  Bit Score: 182.57  E-value: 1.22e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446659567    5 TFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQ-Q 83
Cdd:pfam05772   1 TFFLRSPAIKQNAIHAIAQLPVDQDKPLVVEIRPRTRSLDQNAKLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQaQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 446659567   84 DVVPNLAGnGFVVIGQSTSRMRVSEFAELLELIQAFGT 121
Cdd:pfam05772  81 KVVPGLDG-GFVVLGQSTSKMSVKEMAELIELITAFGA 117
RfbC COG1898
dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme [Cell wall/membrane/envelope biogenesis] ...
 62-137 6.38e-03

dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441502  Cd Length: 177  Bit Score: 35.04  E-value: 6.38e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446659567  62 WHGRWLDAESWKCVFtaalkqqdvVPNLAGNGFVVIgqstsrmrvSEFAELLELIQAF---GTERGVKWSDEArLALEW 137
Cdd:COG1898   97 WVGVELSAENGRQLY---------IPEGFAHGFLTL---------SDDAEVLYKVTDYyapEAERGIRWNDPD-LGIDW 156
 
Name Accession Description Interval E-value
NinB pfam05772
NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and ...
 5-121 1.22e-60

NinB protein; The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.


Pssm-ID: 428623  Cd Length: 117  Bit Score: 182.57  E-value: 1.22e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446659567    5 TFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQ-Q 83
Cdd:pfam05772   1 TFFLRSPAIKQNAIHAIAQLPVDQDKPLVVEIRPRTRSLDQNAKLWALLGDIARQVEWHGEKLDAEDWKDLLTAALKQaQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 446659567   84 DVVPNLAGnGFVVIGQSTSRMRVSEFAELLELIQAFGT 121
Cdd:pfam05772  81 KVVPGLDG-GFVVLGQSTSKMSVKEMAELIELITAFGA 117
RfbC COG1898
dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme [Cell wall/membrane/envelope biogenesis] ...
 62-137 6.38e-03

dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 441502  Cd Length: 177  Bit Score: 35.04  E-value: 6.38e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446659567  62 WHGRWLDAESWKCVFtaalkqqdvVPNLAGNGFVVIgqstsrmrvSEFAELLELIQAF---GTERGVKWSDEArLALEW 137
Cdd:COG1898   97 WVGVELSAENGRQLY---------IPEGFAHGFLTL---------SDDAEVLYKVTDYyapEAERGIRWNDPD-LGIDW 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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