|
Name |
Accession |
Description |
Interval |
E-value |
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1-808 |
0e+00 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 1305.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVRAQVEEIIGHG--TSTPTGHI 78
Cdd:COG0542 2 NFEKFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEEALGRLpkVSGSSGQP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 79 PFTPRAKKVLELSLREALQMNHSYIGTEHILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGyqgderQAATSGAP 158
Cdd:COG0542 82 YLSPRLKRVLELAELEARKLGDEYISTEHLLLALLREGEGVAARILKKLGITLEALREALEELRGG------SRVTSQNP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 159 EAGPQQssatiLDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVP 238
Cdd:COG0542 156 ESKTPA-----LDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVP 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 239 ETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKEIKNR-GDIILFIDEIHTLVGAGAAEGAIDAASMLKPMLARGELQ 317
Cdd:COG0542 231 ESLKDKRVLSLDLGALVAGAKYRGEFEERLKAVLDEVKKSeGNIILFIDELHTLVGAGGAEGAMDAANLLKPALARGELR 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 318 TIGATTLDEYRKYIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPDK 397
Cdd:COG0542 311 CIGATTLDEYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDRFLPDK 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 398 AIDLIDEAGARMNIRRMTAPPDLREFDERIARVRVEKEAAIDAQD---FERAAGLRDDEKKLLAEREAKEEEWKQGDES- 473
Cdd:COG0542 391 AIDLIDEAAARVRMEIDSKPEELDELERRLEQLEIEKEALKKEQDeasFERLAELRDELAELEEELEALKARWEAEKELi 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 474 -------------------------------------VPAVVGPDEIAEVLSGATGIPVFKLTEEESQRLLHMEDEIGKR 516
Cdd:COG0542 471 eeiqelkeeleqrygkipelekelaeleeelaelaplLREEVTEEDIAEVVSRWTGIPVGKLLEGEREKLLNLEEELHER 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 517 YVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGS 596
Cdd:COG0542 551 VIGQDEAVEAVADAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELAKALAEFLFGDEDALIRIDMSEYMEKHSVSRLIGA 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 597 PPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVDFKNTVIVLTTNLGTRDISKSV 676
Cdd:COG0542 631 PPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTIIIMTSNIGSELILDLA 710
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 677 nlgfskadDVESSYEKMKAKVTEELKGHFRPEFLNRLDEIIVFHQLTQPDILRIVDLMVGQLEDRLADKDMGIEVTPAAK 756
Cdd:COG0542 711 --------EDEPDYEEMKEAVMEELKKHFRPEFLNRIDEIIVFHPLSKEELRKIVDLQLKRLRKRLAERGITLELTDAAK 782
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 488473543 757 ELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVKPGQIVVVDAAPEG 808
Cdd:COG0542 783 DFLAEKGYDPEYGARPLKRAIQRELEDPLAEEILAGEIKEGDTITVDVDDGE 834
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
1-809 |
0e+00 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 1085.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 1 MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVRAQVEEIIGHGTSTPTGHIPF 80
Cdd:CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTGFVAVEIPF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 81 TPRAKKVLELSLREALQMNHSYIGTEHILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLqgyqgDERQAATSGApea 160
Cdd:CHL00095 81 TPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLI-----GEIIEAILGA--- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 161 GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVPET 240
Cdd:CHL00095 153 EQSRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 241 LRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKEIKNRGDIILFIDEIHTLVGAGAAEGAIDAASMLKPMLARGELQTIG 320
Cdd:CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 321 ATTLDEYRKYIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPDKAID 400
Cdd:CHL00095 313 ATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAID 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 401 LIDEAGARMNIRRMTAPPDLREFDERIARVRVEKEAAIDAQDFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPA--VV 478
Cdd:CHL00095 393 LLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEvpVV 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 479 GPDEIAEVLSGATGIPVFKLTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGK 558
Cdd:CHL00095 473 TEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGK 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 559 TELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLL 638
Cdd:CHL00095 553 TELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLL 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 639 QILDEGRLTDAQGRVVDFKNTVIVLTTNLGTRDISKSVN-LGF--SKADDVESSYEKMKAKVTEELKGHFRPEFLNRLDE 715
Cdd:CHL00095 633 QILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGgLGFelSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDE 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 716 IIVFHQLTQPDILRIVDLMVGQLEDRLADKDMGIEVTPAAKELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVK 795
Cdd:CHL00095 713 IIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIK 792
|
810
....*....|....
gi 488473543 796 PGQIVVVDAAPEGS 809
Cdd:CHL00095 793 PGDIIIVDVNDEKE 806
|
|
| chaperone_ClpB |
TIGR03346 |
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent ... |
5-804 |
0e+00 |
|
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization]
Pssm-ID: 274529 [Multi-domain] Cd Length: 850 Bit Score: 994.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 5 FTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVRAQVEEIIGH--GTSTPTGHIPFTP 82
Cdd:TIGR03346 1 LTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARPLLQKAGVNVGALRQALEKELERlpKVSGPGGQVYLSP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 83 RAKKVLELSLREALQMNHSYIGTEHILLGLIREGeGVAAQVLIRLGADLNTVRNSVLQLLQGyqgderQAATSGAPEAGP 162
Cdd:TIGR03346 81 DLNRLLNLAEKLAQKRGDEFISSEHLLLALLDDK-GTLGKLLKEAGATADALEAAINAVRGG------QKVTDANAEDQY 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 163 QqssatILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVPETLR 242
Cdd:TIGR03346 154 E-----ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPEGLK 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 243 DKKIYSLDLGSMVAGSRYRGDFEERMKKVLKEIKNR-GDIILFIDEIHTLVGAGAAEGAIDAASMLKPMLARGELQTIGA 321
Cdd:TIGR03346 229 NKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSeGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGA 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 322 TTLDEYRKYIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPDKAIDL 401
Cdd:TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPSVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDL 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 402 IDEAGARMNIRRMTAPPDLREFDERIARVRVEKEA---AIDAQDFERAAGLRDDEKKLLAEREAKEEEWK---------- 468
Cdd:TIGR03346 389 IDEAAARIRMEIDSKPEELDELDRRIIQLEIEREAlkkEKDEASKKRLEDLEKELADLEEEYAELEEQWKaekasiqgiq 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 469 ------------------QGD---------ESVPA----------------------VVGPDEIAEVLSGATGIPVFKLT 499
Cdd:TIGR03346 469 qikeeieqvrleleqaerEGDlakaaelqyGKLPElekqlqaaeqklgeeqnrllreEVTAEEIAEVVSRWTGIPVSKML 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 500 EEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDALITL 579
Cdd:TIGR03346 549 EGEREKLLHMEEELHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDSEDAMVRI 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 580 DMSEYSEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVDFKNT 659
Cdd:TIGR03346 629 DMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNT 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 660 VIVLTTNLGTRDISKSVNlgfskaddvESSYEKMKAKVTEELKGHFRPEFLNRLDEIIVFHQLTQPDILRIVDLMVGQLE 739
Cdd:TIGR03346 709 VIIMTSNLGSDFIQELAG---------GDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLR 779
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488473543 740 DRLADKDMGIEVTPAAKELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVKPGQIVVVDA 804
Cdd:TIGR03346 780 KRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVAPGDTIRVDV 844
|
|
| ClpA |
TIGR02639 |
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, ... |
5-804 |
0e+00 |
|
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 274241 [Multi-domain] Cd Length: 730 Bit Score: 758.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 5 FTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLIseGEGVAAKALESLDISLEAVRAQVEEIIG-HGTSTPTGH---IPF 80
Cdd:TIGR02639 1 ISEELERILSDALEEAKERRHEFVTLEHLLLALL--DDNEAIEILEECGGDVELLRKRLEDYLEeNLPVIPEDIdeePEQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 81 TPRAKKVLELSLREALQMNHSYIGTEHILLGLIREGEGVAAQVLIRLGADlntvRNSVLQLLQGYQGDERQAATSGAPEA 160
Cdd:TIGR02639 79 TVGVQRVIQRALLHVKSAGKKEIDIGDLLVALFDEEDSHASYFLKSQGIT----RLDILNYISHGISKDDGKDQLGEEAG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 161 GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVPET 240
Cdd:TIGR02639 155 KEEEKGQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLALRIAEGKVPER 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 241 LRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKEIKNRGDIILFIDEIHTLVGAGA-AEGAIDAASMLKPMLARGELQTI 319
Cdd:TIGR02639 235 LKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAtSGGSMDASNLLKPALSSGKIRCI 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 320 GATTLDEYRKYIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPDKAI 399
Cdd:TIGR02639 315 GSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 400 DLIDEAGARMNIRRmtappdlrefderiarvrvekeaaidaqdferaaglrDDEKKllaereakeeewkqgdesvpAVVG 479
Cdd:TIGR02639 395 DVIDEAGAAFRLRP-------------------------------------KAKKK--------------------ANVN 417
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 480 PDEIAEVLSGATGIPVFKLTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGKT 559
Cdd:TIGR02639 418 VKDIENVVAKMAKIPVKTVSSDDREQLKNLEKNLKAKIFGQDEAIDQLVSAIKRSRAGLGDPNKPVGSFLFVGPTGVGKT 497
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 560 ELTKALTEFLfgdEDALITLDMSEYSEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQ 639
Cdd:TIGR02639 498 ELAKQLAEEL---GVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQ 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 640 ILDEGRLTDAQGRVVDFKNTVIVLTTNLGTRDISKSvNLGFSKaddvessyEKMKAKVTEELKGHFRPEFLNRLDEIIVF 719
Cdd:TIGR02639 575 VMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKP-PIGFGG--------ENRESKSLKAIKKLFSPEFRNRLDAIIHF 645
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 720 HQLTQPDILRIVDLMVGQLEDRLADKDMGIEVTPAAKELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVKPGQI 799
Cdd:TIGR02639 646 NDLSEEMAEKIVKKFLDELQDQLNEKNIELELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGS 725
|
....*
gi 488473543 800 VVVDA 804
Cdd:TIGR02639 726 VKISL 730
|
|
| PRK10865 |
PRK10865 |
ATP-dependent chaperone ClpB; |
3-804 |
0e+00 |
|
ATP-dependent chaperone ClpB;
Pssm-ID: 182791 [Multi-domain] Cd Length: 857 Bit Score: 733.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 3 ERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVRAQVEEIIG-----HGTStptGH 77
Cdd:PRK10865 4 DRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSrlpqvEGTG---GD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 78 IPFTPRAKKVLELSLREALQMNHSYIGTEHILLGLIrEGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDERQAAtsga 157
Cdd:PRK10865 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAE---- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 158 peagpQQSSAtiLDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDV 237
Cdd:PRK10865 156 -----DQRQA--LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 238 PETLRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKEI-KNRGDIILFIDEIHTLVGAGAAEGAIDAASMLKPMLARGEL 316
Cdd:PRK10865 229 PEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLaKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 317 QTIGATTLDEYRKYIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPD 396
Cdd:PRK10865 309 HCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPD 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 397 KAIDLIDEAGARMNIRRMTAPPDLREFDERIARVRVEKEAAIDAQD---FERAAGLRDDEKKLLAEREAKEEEWK----- 468
Cdd:PRK10865 389 KAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDeasKKRLDMLNEELSDKERQYSELEEEWKaekas 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 469 -----------------------QGDES---------VPAV---------------------VGPDEIAEVLSGATGIPV 495
Cdd:PRK10865 469 lsgtqtikaeleqakiaieqarrVGDLArmselqygkIPELekqlaaatqlegktmrllrnkVTDAEIAEVLARWTGIPV 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 496 FKLTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDA 575
Cdd:PRK10865 549 SRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDA 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 576 LITLDMSEYSEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVD 655
Cdd:PRK10865 629 MVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVD 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 656 FKNTVIVLTTNLGTRDISKSVNlgfskaddvESSYEKMKAKVTEELKGHFRPEFLNRLDEIIVFHQLTQPDILRIVDLMV 735
Cdd:PRK10865 709 FRNTVVIMTSNLGSDLIQERFG---------ELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQL 779
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488473543 736 GQLEDRLADKDMGIEVTPAAKELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVKPGQIVVVDA 804
Cdd:PRK10865 780 QRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEV 848
|
|
| VI_ClpV1 |
TIGR03345 |
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, ... |
20-804 |
0e+00 |
|
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274528 [Multi-domain] Cd Length: 852 Bit Score: 688.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 20 AKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVRAQVEEIIGHGTSTPTGHIPFTPRakkvLELSLREA---- 95
Cdd:TIGR03345 16 CVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGNTRTPVFSPH----LVELLQEAwlla 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 96 -LQMNHSYIGTEHILLGLIREGE-----GVAAQVLIRLGADLntVRNSVLQLLQGYQGDERQAATSGAPEAGPQQSSATI 169
Cdd:TIGR03345 92 sLELGDGRIRSGHLLLALLTDPElrrllGSISPELAKIDREA--LREALPALVEGSAEASAAAADAAPAGAAAGAAGTSA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 170 LDQFGRNLTEAARDGELDPVIGREREIeRVMV-VLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYS 248
Cdd:TIGR03345 170 LDQYTTDLTAQAREGKIDPVLGRDDEI-RQMIdILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 249 LDLGSMVAGSRYRGDFEERMKKVLKEIKNRGD-IILFIDEIHTLVGAGAAEGAIDAASMLKPMLARGELQTIGATTLDEY 327
Cdd:TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQpIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEY 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 328 RKYIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPDKAIDLIDEAGA 407
Cdd:TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 408 RMNIRRMTAPPDLREFDERIA-----RVRVEKEAAIDAQDFERAAGLRDDEKKLLAEREAKEEEWK-------------- 468
Cdd:TIGR03345 409 RVALSQNATPAALEDLRRRIAaleleLDALEREAALGADHDERLAELRAELAALEAELAALEARWQqekelveailalra 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 469 ------------------------------QGDES-VPAVVGPDEIAEVLSGATGIPVFKLTEEESQRLLHMEDEIGKRY 517
Cdd:TIGR03345 489 eleadadapaddddalraqlaeleaalasaQGEEPlVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERV 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 518 VGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSP 597
Cdd:TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSP 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 598 PGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVDFKNTVIVLTTNLGTRDISKSVN 677
Cdd:TIGR03345 649 PGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCA 728
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 678 LGFSKADDvessyEKMKAKVTEELKGHFRPEFLNRLdEIIVFHQLTQPDILRIVDLMVGQLEDRLADK-DMGIEVTPAAK 756
Cdd:TIGR03345 729 DPETAPDP-----EALLEALRPELLKVFKPAFLGRM-TVIPYLPLDDDVLAAIVRLKLDRIARRLKENhGAELVYSEALV 802
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 488473543 757 ELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKIL--FGEVKPGQIVVVDA 804
Cdd:TIGR03345 803 EHIVARCTEVESGARNIDAILNQTLLPELSRQILerLAAGEPIERIHLDV 852
|
|
| clpA |
PRK11034 |
ATP-dependent Clp protease ATP-binding subunit; Provisional |
20-816 |
0e+00 |
|
ATP-dependent Clp protease ATP-binding subunit; Provisional
Pssm-ID: 236828 [Multi-domain] Cd Length: 758 Bit Score: 568.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 20 AKALNHNYIGTEHLLLGLISEGEgvAAKALESLDISLEAVRAQVEEIIGHGTstptghiPFTPRAKKVLE----LSLREA 95
Cdd:PRK11034 17 AREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTT-------PVLPASEEERDtqptLSFQRV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 96 LQM--------NHSYIGTEHILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQllqGYQGDERQAATSGA--PEAGPQQS 165
Cdd:PRK11034 88 LQRavfhvqssGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISH---GTRKDEPSQSSDPGsqPNSEEQAG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 166 SATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVPETLRDKK 245
Cdd:PRK11034 165 GEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCT 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 246 IYSLDLGSMVAGSRYRGDFEERMKKVLKEIKNRGDIILFIDEIHTLVGAGAAEGA-IDAASMLKPMLARGELQTIGATTL 324
Cdd:PRK11034 245 IYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGqVDAANLIKPLLSSGKIRVIGSTTY 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 325 DEYRKYIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPDKAIDLIDE 404
Cdd:PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 405 AGAR---MNIRRMTAPPDLREFDERIARVRVEKEAAIDAQDFERAAGLrDDEKKLLaereakeeewkqgdesvpavvgpd 481
Cdd:PRK11034 405 AGARarlMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNL-GDRLKML------------------------ 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 482 eiaevlsgatgipVFklteeesqrllhmedeigkryvGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGKTEL 561
Cdd:PRK11034 460 -------------VF----------------------GQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEV 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 562 TKALTEFLfGDEdaLITLDMSEYSEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQIL 641
Cdd:PRK11034 505 TVQLSKAL-GIE--LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 642 DEGRLTDAQGRVVDFKNTVIVLTTNLGTRDISKSvNLGFSKADdveSSYEKMkakvtEELKGHFRPEFLNRLDEIIVFHQ 721
Cdd:PRK11034 582 DNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK-SIGLIHQD---NSTDAM-----EEIKKIFTPEFRNRLDNIIWFDH 652
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 722 LTQPDILRIVDLMVGQLEDRLADKDMGIEVTPAAKELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVKPGQIVV 801
Cdd:PRK11034 653 LSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVT 732
|
810
....*....|....*
gi 488473543 802 VDAAPEGSEEPFVFT 816
Cdd:PRK11034 733 VALDKEKNELTYGFQ 747
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
505-719 |
9.56e-97 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 299.48 E-value: 9.56e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 505 RLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEY 584
Cdd:cd19499 1 KLLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 585 SEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVDFKNTVIVLT 664
Cdd:cd19499 81 MEKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMT 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 488473543 665 TNlgtrdisksvnlgfskaddvessyekmkakvteelkgHFRPEFLNRLDEIIVF 719
Cdd:cd19499 161 SN-------------------------------------HFRPEFLNRIDEIVVF 178
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
543-716 |
1.53e-83 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 264.44 E-value: 1.53e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 543 RPAGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVIL 622
Cdd:pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 623 FDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVDFKNTVIVLTTNLGTRDISKSVNLGFSKaddvesSYEKMKAKVTEELK 702
Cdd:pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDASRLGDSP------DYELLKEEVMDLLK 154
|
170
....*....|....
gi 488473543 703 GHFRPEFLNRLDEI 716
Cdd:pfam07724 155 KGFIPEFLGRLPII 168
|
|
| AAA_lid_9 |
pfam17871 |
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ... |
350-451 |
2.50e-41 |
|
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.
Pssm-ID: 465544 [Multi-domain] Cd Length: 104 Bit Score: 146.48 E-value: 2.50e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 350 SIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPDKAIDLIDEAGARMNIRRMTAPPDLREFDERIAR 429
Cdd:pfam17871 1 SVEEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARVRLSQESKPEELEDLERELAK 80
|
90 100
....*....|....*....|..
gi 488473543 430 VRVEKEAAIDAQDFERAAGLRD 451
Cdd:pfam17871 81 LEIEKEALEREQDFEKAERLAK 102
|
|
| ClpB_D2-small |
pfam10431 |
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ... |
722-802 |
1.03e-29 |
|
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerization, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Pssm-ID: 463090 [Multi-domain] Cd Length: 81 Bit Score: 112.50 E-value: 1.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 722 LTQPDILRIVDLMVGQLEDRLADKDMGIEVTPAAKELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVKPGQIVV 801
Cdd:pfam10431 1 LSKEELRKIVDLQLKELQKRLAERGITLELTDAAKDWLAEKGYDPEYGARPLRRAIQREIEDPLAEEILSGELKEGDTVR 80
|
.
gi 488473543 802 V 802
Cdd:pfam10431 81 V 81
|
|
| ClpB_D2-small |
smart01086 |
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ... |
722-808 |
6.19e-27 |
|
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.
Pssm-ID: 198154 [Multi-domain] Cd Length: 90 Bit Score: 104.83 E-value: 6.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 722 LTQPDILRIVDLMVGQLEDRLADKDMGIEVTPAAKELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVKPGQIVV 801
Cdd:smart01086 1 LDKEDLVRIVDLPLNALQKRLAEKGITLEFTDEALDWLAEKGYDPKYGARPLRRIIQRELEDPLAELILSGELKDGDTVV 80
|
....*..
gi 488473543 802 VDAAPEG 808
Cdd:smart01086 81 VDVDDGE 87
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
190-342 |
2.43e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 79.88 E-value: 2.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 190 IGREREIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVPetlrdkkIYSLDLGSMVAGSRYRGDFEERMK 269
Cdd:cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAP-------FLYLNASDLLEGLVVAELFGHFLV 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 488473543 270 KVLKEIKNRGD-IILFIDEIHTLvGAGAAEGAIDA-ASMLKPMLARGELQTIGATTLDEYRKyieKDAALERRFQ 342
Cdd:cd00009 74 RLLFELAEKAKpGVLFIDEIDSL-SRGAQNALLRVlETLNDLRIDRENVRVIGATNRPLLGD---LDRALYDRLD 144
|
|
| Clp_N |
pfam02861 |
Clp amino terminal domain, pathogenicity island component; This short domain is found in one ... |
16-68 |
3.00e-15 |
|
Clp amino terminal domain, pathogenicity island component; This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site. In many bacterial species, including E.coli, this region represents the N-terminus of one of the key components of the pathogenicity island complex that injects toxin from one bacterium into another.
Pssm-ID: 460724 [Multi-domain] Cd Length: 53 Bit Score: 70.24 E-value: 3.00e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 488473543 16 AQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVRAQVEEIIG 68
Cdd:pfam02861 1 AQELARALGHQYIGTEHLLLALLEEDDGLAARLLKKAGVDLDALREAIEKLLG 53
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
518-666 |
1.75e-14 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 71.41 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 518 VGQEDAVKALCRSIRRtraglkdpkRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEKHTASrmfgsp 597
Cdd:cd00009 1 VGQEEAIEALREALEL---------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA------ 65
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488473543 598 pGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQILDEGRLTdaqgrVVDFKNTVIVLTTN 666
Cdd:cd00009 66 -ELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATN 128
|
|
| Clp_N |
pfam02861 |
Clp amino terminal domain, pathogenicity island component; This short domain is found in one ... |
91-142 |
1.50e-13 |
|
Clp amino terminal domain, pathogenicity island component; This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site. In many bacterial species, including E.coli, this region represents the N-terminus of one of the key components of the pathogenicity island complex that injects toxin from one bacterium into another.
Pssm-ID: 460724 [Multi-domain] Cd Length: 53 Bit Score: 65.62 E-value: 1.50e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 488473543 91 SLREALQMNHSYIGTEHILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLL 142
Cdd:pfam02861 1 AQELARALGHQYIGTEHLLLALLEEDDGLAARLLKKAGVDLDALREAIEKLL 52
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
213-345 |
7.38e-12 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 63.38 E-value: 7.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 213 LIGEPGVGKSACVEGLAQAIvrgdvpetlrDKKIYSLDLGSMVagSRYRGDFEERMKKVLKEIKNRGDIILFIDEIHTLV 292
Cdd:pfam00004 3 LYGPPGTGKTTLAKAVAKEL----------GAPFIEISGSELV--SKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALA 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 488473543 293 GAGAAEG---AIDAASMLKPMLARGELQT-----IGATTldeyrkYIEK-DAALERRFQPIQ 345
Cdd:pfam00004 71 GSRGSGGdseSRRVVNQLLTELDGFTSSNskvivIAATN------RPDKlDPALLGRFDRII 126
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
547-674 |
9.55e-12 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 63.08 E-value: 9.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 547 SFIFAGPSGVGKTELTKALTEFLFGDEDALITLdmseySEKHTASRMFGS--PPGFVGYEEGGQLTEKVRRKpfSVILFD 624
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQL-----TRDTTEEDLFGRrnIDPGGASWVDGPLVRAAREG--EIAVLD 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 488473543 625 EIEKAHPDIFNSLLQILDEGRLTDAQGR---VVDFKNTVIVLTTNLGTRDISK 674
Cdd:pfam07728 74 EINRANPDVLNSLLSLLDERRLLLPDGGelvKAAPDGFRLIATMNPLDRGLNE 126
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
544-682 |
6.66e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 61.24 E-value: 6.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 544 PAGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSPPGFVGYEEGGQ----LTEKVRRKPFS 619
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELrlrlALALARKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488473543 620 VILFDEIEKAHPDIFNSLLQILDEGRLTDAQGRvvdFKNTVIVLTTNLGTRDISKSVNLGFSK 682
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKS---EKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
521-670 |
2.47e-09 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 56.91 E-value: 2.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 521 EDAVKALCRSIRRTRAGLKDPKrpagSFIFAGPSGVGKTELTKALTEFLFGDedaLITLDMSEYSEKHtasrmfgsppgf 600
Cdd:cd19481 6 REAVEAPRRGSRLRRYGLGLPK----GILLYGPPGTGKTLLAKALAGELGLP---LIVVKLSSLLSKY------------ 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 601 VGYEEG--GQLTEKVRRKPFSVILFDEIEKAHPD------------IFNSLLQILDEGRLTDaqgrvvdfkNTVIVLTTN 666
Cdd:cd19481 67 VGESEKnlRKIFERARRLAPCILFIDEIDAIGRKrdssgesgelrrVLNQLLTELDGVNSRS---------KVLVIAATN 137
|
....
gi 488473543 667 LGTR 670
Cdd:cd19481 138 RPDL 141
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
28-359 |
1.81e-08 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 57.61 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 28 IGTEHLLLGLISEGEGVAAKALESLDISLEAVRAQVEEIIGHgtstptgHIPFTPRAKKVLELSLREALQMNHSYIGTEH 107
Cdd:COG0464 2 AELLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLL-------LLLLLLALLLVELLLLLLSGALAALLLLALL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 108 ILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDERQAATSGAPEAGPQQSSATILDQFGRNLTEAA---RDG 184
Cdd:COG0464 75 LLALLALLAALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELlelREA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 185 ELDPVIGRE---REIERVMVVLSRRTK-------NNP---VLIGEPGVGKSACVEGLAQAIvrgdvpetlrDKKIYSLDL 251
Cdd:COG0464 155 ILDDLGGLEevkEELRELVALPLKRPElreeyglPPPrglLLYGPPGTGKTLLARALAGEL----------GLPLIEVDL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 252 GSMVagSRYRGDFEERMKKVLKEIKNRGDIILFIDEIHTLVGAGAAEGAIDA----ASMLKPM-LARGELQTIGATtlde 326
Cdd:COG0464 225 SDLV--SKYVGETEKNLREVFDKARGLAPCVLFIDEADALAGKRGEVGDGVGrrvvNTLLTEMeELRSDVVVIAAT---- 298
|
330 340 350
....*....|....*....|....*....|....
gi 488473543 327 YRKyIEKDAALERRFQ-PIQVDEPSIPLAIEILK 359
Cdd:COG0464 299 NRP-DLLDPALLRRFDeIIFFPLPDAEERLEIFR 331
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
364-645 |
6.41e-08 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 55.93 E-value: 6.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 364 RYEAHHKITITDEAITSAANLASRYIQDRFLPDKAIDLIDEAGARMNIRRMTAPPDLREFDERIARVRVEKEAAIDAQDF 443
Cdd:COG1401 49 RLSEELLRADRAARATELVEELSAALEVVVLLLDLEKVELNEKLALSEAAVAIEELYELEADSEIEAVGLLLELAERSDA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 444 ERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFKLTEEESQRLLHMEDEIGKRYVGQEDA 523
Cdd:COG1401 129 LEALERARLLLELADLEERAALETEVLEALEAELEELLAAPEDLSADALAAELSAAEELYSEDLESEDDYLKDLLREKFE 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 524 vkalcRSIRRTRAGLKDPKrpagSFIFAGPSGVGKTELTKALTEFLFGDEDALITL-----DMSeYSEKhtasrMFG-SP 597
Cdd:COG1401 209 -----ETLEAFLAALKTKK----NVILAGPPGTGKTYLARRLAEALGGEDNGRIEFvqfhpSWS-YEDF-----LLGyRP 273
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 488473543 598 PGFVG-YEEG-GQLTE------KVRRKPFsVILFDEIEKAHPD-IFNSLLQILDEGR 645
Cdd:COG1401 274 SLDEGkYEPTpGIFLRfclkaeKNPDKPY-VLIIDEINRANVEkYFGELLSLLESDK 329
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
519-666 |
1.50e-07 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 51.83 E-value: 1.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 519 GQEDAVKALCRSIRRtraglkdpKRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDalitlDMSEYSEKHTASRMF--GS 596
Cdd:pfam13177 1 GQPEAIQLLQNSLEN--------GRLSHAYLFSGPEGVGKLELALAFAKALFCEEP-----GDDLPCGQCRSCRRIesGN 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 597 PPGFVGYEEGGQ---------LTEKVRRKPF----SVILFDEIEKAHPDIFNSLLQILDEgrltdAQGrvvdfkNTVIVL 663
Cdd:pfam13177 68 HPDLVIIEPEGQsikidqireLQKEFSKSPYegkkKVYIIEDAEKMTASAANSLLKFLEE-----PPG------NTVIIL 136
|
...
gi 488473543 664 TTN 666
Cdd:pfam13177 137 LTE 139
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
366-746 |
2.21e-07 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 54.15 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 366 EAHHKITITDEAITSAANLASRYIQDRFLPDKAIDLIDEAGARMNIRRMTAPPDLREFDERIARVRVEKEAAIDAQDFER 445
Cdd:COG0464 3 ELLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 446 AAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGPDEIAEVLSGATGIPVFKLTEEESQRLLHMEDEIGKRY----VGQE 521
Cdd:COG0464 83 AALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELREAilddLGGL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 522 DAVKALCRSI---------RRTRAGLKDPKRpagsFIFAGPSGVGKTELTKALTEFLFGDedaLITLD----MSEY---S 585
Cdd:COG0464 163 EEVKEELRELvalplkrpeLREEYGLPPPRG----LLLYGPPGTGKTLLARALAGELGLP---LIEVDlsdlVSKYvgeT 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 586 EKHTAsRMFgsppgfvgyeeggqltEKVRRKPFSVILFDEIEKAHPD-----------IFNSLLQILDEGRltdaqgrvv 654
Cdd:COG0464 236 EKNLR-EVF----------------DKARGLAPCVLFIDEADALAGKrgevgdgvgrrVVNTLLTEMEELR--------- 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 655 dfKNTVIVLTTNLgtrdisksvnlgFSKADdvessyekmkakvteelkghfrPEFLNRLDEIIVFHQLTQPDILRIVDLM 734
Cdd:COG0464 290 --SDVVVIAATNR------------PDLLD----------------------PALLRRFDEIIFFPLPDAEERLEIFRIH 333
|
410
....*....|..
gi 488473543 735 vgqLEDRLADKD 746
Cdd:COG0464 334 ---LRKRPLDED 342
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
207-341 |
3.60e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.45 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 207 TKNNPVLIGEPGVGKSACVEGLAQAIVRGDV------PETLRDKkIYSLDLGSMVAGSRYRGDFEERMKKVLKEIKNRGD 280
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGgviyidGEDILEE-VLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 488473543 281 IILFIDEIHTLVGAG--AAEGAIDAASMLKPMLARGELQTIGATTLDEyrkyIEKDAALERRF 341
Cdd:smart00382 80 DVLILDEITSLLDAEqeALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRF 138
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
520-666 |
1.59e-05 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 47.66 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 520 QEDAVKALCRSIRRtraglkdpKRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDAlitlDMSEYSEKHTASRMFGSPPG 599
Cdd:COG0470 1 QEEAWEQLLAAAES--------GRLPHALLLHGPPGIGKTTLALALARDLLCENPE----GGKACGQCHSRLMAAGNHPD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 600 F--VGYEEGG---------QLTEKVRRKPFS----VILFDEIEKAHPDIFNSLLQILDEGRltdaqgrvvdfKNTVIVLT 664
Cdd:COG0470 69 LleLNPEEKSdqigidqirELGEFLSLTPLEggrkVVIIDEADAMNEAAANALLKTLEEPP-----------KNTPFILI 137
|
..
gi 488473543 665 TN 666
Cdd:COG0470 138 AN 139
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
213-291 |
4.48e-05 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 44.58 E-value: 4.48e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488473543 213 LIGEPGVGKSACVEGLAQAIvrgdvpetlrDKKIYSLDLGSMVagSRYRGDFEERMKKVLKEIKNRGDIILFIDEIHTL 291
Cdd:cd19481 31 LYGPPGTGKTLLAKALAGEL----------GLPLIVVKLSSLL--SKYVGESEKNLRKIFERARRLAPCILFIDEIDAI 97
|
|
| UVR |
pfam02151 |
UvrB/uvrC motif; |
424-456 |
9.29e-05 |
|
UvrB/uvrC motif;
Pssm-ID: 308001 [Multi-domain] Cd Length: 36 Bit Score: 40.07 E-value: 9.29e-05
10 20 30
....*....|....*....|....*....|...
gi 488473543 424 DERIARVRVEKEAAIDAQDFERAAGLRDDEKKL 456
Cdd:pfam02151 1 KKLIKELEEEMEEAAENEDFEKAAKLRDQINAL 33
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
188-237 |
4.87e-04 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 41.72 E-value: 4.87e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 488473543 188 PVIGREREIERVMVVLSRRTKNNP---VLIGEPGVGKSACVEGLAQAIVRGDV 237
Cdd:pfam13191 1 RLVGREEELEQLLDALDRVRSGRPpsvLLTGEAGTGKTTLLRELLRALERDGG 53
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
518-643 |
5.35e-04 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 43.26 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 518 VGQEDAVKALCRSIRRtraglkdpKRPAGSFIFAGPSGVGKTELTKALTEFLF---GDE-------------DALITLDM 581
Cdd:COG2812 13 VGQEHVVRTLKNALAS--------GRLAHAYLFTGPRGVGKTTLARILAKALNcenGPTgepcgecescraiAAGSHPDV 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 488473543 582 SEYSekHTASRmfgsppgfVGYEEGGQLTEKVRRKPFS----VILFDEIEKAHPDIFNSLLQILDE 643
Cdd:COG2812 85 IEID--AEASN--------IGVDDIRELIEKVSYAPVEgrykVYIIDEAHMLTTEAFNALLKTLEE 140
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
212-341 |
7.34e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 40.35 E-value: 7.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 212 VLIGEPGVGKSACVEGLAQAIVRGDVPETLRDKKIYSLDLgsmVAGSRYRGDFEERMKKVLKEIKNRGDIIlFIDEIHTL 291
Cdd:pfam07728 3 LLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDL---FGRRNIDPGGASWVDGPLVRAAREGEIA-VLDEINRA 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 488473543 292 VGAGAAE--GAIDAASMLKP-----MLARGELQTIGATTLDEYRKYIEKDAALERRF 341
Cdd:pfam07728 79 NPDVLNSllSLLDERRLLLPdggelVKAAPDGFRLIATMNPLDRGLNELSPALRSRF 135
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
545-642 |
1.11e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 40.02 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 545 AGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEK----HTASRMFGSPPGFVGYEEG--GQLTEKV-RRKP 617
Cdd:pfam13401 5 AGILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPkdllRALLRALGLPLSGRLSKEEllAALQQLLlALAV 84
|
90 100
....*....|....*....|....*
gi 488473543 618 FSVILFDEIEKAHPDIFNSLLQILD 642
Cdd:pfam13401 85 AVVLIIDEAQHLSLEALEELRDLLN 109
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
186-359 |
2.72e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 40.25 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 186 LDPVIGRE---REIERVMVVLSRR---------TKNNPVLIGEPGVGKSACVEGLAQAIvrgDVPetlrdkkIYSLDLGS 253
Cdd:COG1223 1 LDDVVGQEeakKKLKLIIKELRRRenlrkfglwPPRKILFYGPPGTGKTMLAEALAGEL---KLP-------LLTVRLDS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 254 MVagSRYRGDFEERMKKVLKEIKNRGDIIlFIDEIHTLvgaGAAEGAIDaasmlkpmlARGELQ---------------- 317
Cdd:COG1223 71 LI--GSYLGETARNLRKLFDFARRAPCVI-FFDEFDAI---AKDRGDQN---------DVGEVKrvvnallqeldglpsg 135
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 488473543 318 --TIGATTLDEyrkyiEKDAALERRFQ-PIQVDEPSIPLAIEILK 359
Cdd:COG1223 136 svVIAATNHPE-----LLDSALWRRFDeVIEFPLPDKEERKEILE 175
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
189-232 |
7.11e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 39.38 E-value: 7.11e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 488473543 189 VIGREREIERVMV-VLSRRtknnPVLI-GEPGVGKSACVEGLAQAI 232
Cdd:COG0714 14 YVGQEELIELVLIaLLAGG----HLLLeGVPGVGKTTLAKALARAL 55
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
518-643 |
7.98e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 39.10 E-value: 7.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488473543 518 VGQEDAVKAlCRSIRRTRAGLKDPKR----PAGSFIFAGPSGVGKTELTKALTE-----FLFGDEDALItldmSEYSEKh 588
Cdd:COG1223 5 VGQEEAKKK-LKLIIKELRRRENLRKfglwPPRKILFYGPPGTGKTMLAEALAGelklpLLTVRLDSLI----GSYLGE- 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 488473543 589 TASRMfgsppgfvgyeegGQLTEKVRRKPfSVILFDEIE---------KAHPD---IFNSLLQILDE 643
Cdd:COG1223 79 TARNL-------------RKLFDFARRAP-CVIFFDEFDaiakdrgdqNDVGEvkrVVNALLQELDG 131
|
|
| |
